pgm1 (pgm1)


Basic Information

Item Value
gene id pgm1
gene name pgm1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12720091 ~ 12730969 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811826.1
GTACGTGTGGCTGCTCTGCCACTGCAGTCGCCTCCTCATTGGGACAGATTGCGGATCACACGGGGCGACCTTAGGTGCTTTCTGGGGGTTAAAAAATGGTGAAAGTAACGACAGTGAAGACCAAGCCGTACACGGACCAGAAGCCCGGGACGAGCGGCCTGAGGAAGAGGGTGACGGTGTTTCAACAGAACCAGCACTATGCGGAAAACTTCATCCAGAGCATCATCTCTGTCATCGAGCCTGCCGAGCGCCAGGCTGCCACCGTGGTGGTGGGAGGAGATGGGAGGTTTTTCATGAAAGACGCGATTCAGTTGATCGTTCAGATTGCTGCTGGCAACGGGATTGGCCATTTGGTGATTGGTCAGAATGGCATCATGTCCACGCCAGCAGTCTCCTGTGTGATCCGGAAGATAAAGGCAGTGGGAGGCATTATCCTCACAGCCAGCCACAACCCTGGAGGCCCCACTGGAGACTTTGGCATTAAGTACAACATCTCCAGTGGAGGACCTGCTCCAGAGGGCATCACAAACAAAATATTTGAGATCAGCAAAACCCTGCAGGAGTATCACATCTGCCCAGAGCTGAAAGTGGATCTGTCCAAGATCGGCAAACAGACCTTTGAAGTGGACACTTTCAAACCTTTCACAGTGGAGATTGTGGACTCTGTGGAGGCCTATGCTGAGATGCTAAGGGGCATCTTTGACTTTGCTGCACTGAAGAATCTTCTCTCTGGAGCCAGTCACATTAACGTCCGCCTGGATGCTATGCACGGAGTGGTTGGTCCTTATGTGAAGAAGATAGTCTGTGAAGAGCTGGGTTCTCCTGCCAACTCAGCAGTCAACTGTGTCCCCAAGGAGGACTTCGGGGGCCACCACCCTGACCCCAACTTGACCTATGCTGCCGACCTGGTCAACACCATGAAAGGAGGAGAATATGATTTGGGCGCAGCCTTTGATGGTGATGGTGACCGTAACATGGTGCTGGGTAAAAATGGCTTTTTCGTGAACCCCTCCGACTCAGTGGCTGTCATTGCTGCCAACATTACCAGCATCCCTTACTTCCAGAAGACTGGTGTCAAAGGACTGGCCCGCAGTATGCCCACAAGTGGAGCCCTTGACAATGTGGCGAAAGCTCTGCAGATGCAGCTGTACGAGACTCCCACTGGCTGGAAGTTCTTTGGAAATCTGATGGATGCTGGAAAACTTTCACTGTGTGGAGAGGAGAGCTTCGGCACAGGCTCAGATCATATTCGTGAGAAGGACGGCTTGTGGGCGGTGCTTGCATGGTTGTCAATCTTAGCTGCCAGGAAACAGAGCGTGGAAGAGATCATGAAGGATCACTGGCAGAAGTTTGGCAGGAACTTCTTCACCAGGTACGACTATGAGGAGGTCGACTCAGACGCGGCCAACAAGATGATCAAGGATCTGGAGACGGCAATGTTCGACCCGTCCTTCGTAGGGAAGAAGTTATCATCAGGTGATAAGACTTATGAGGTCGCTGTCTCTGACAACTTTGCCTACACGGACCCTGTGGACGGAAGTGTGTCCAAAAACCAGggccTCAGGATCATCTTCTCTGATGGTTCTAGGATAATTTACCGTCTCAGCGGTACAGGCAGCGCGGGAGCAACCATCAGGCTCTACATAGACAGCTATGAGAAGGACCCCCAGAAGATTTACCAGGACCCACAGgtgatgCTGGCTCCCCTGGTGGACATCGCCTTGAAGGTCTCTCAGCTCCAAGAGAAGACTGGACGCACTGGCCCCACTGTGATCACATGAGTCCTCTGCCACACTGCCTCCACTCACCCTCAGCAACAGGATACCTCTGCTCTCTCCGGGGTGAAGCTGCCCTTGAATGCTGTCTTGGCTTCCTATCCTGGCCCTCTTAGAAAAACCCAGCtggacaaaaaagtgaaactcaACATGCAGGATGAATACAAGAAAATACATGAGGAGCTCTTGATTTATCTTACACTGAAAGTGATCCACTGCCATAGTCTTGTGTTGGACAAGGATGAGTTTTAATATATGCTGTTTTCTTAAACTAAGGGAGAAAAATCAGCCTTAGGTTGTCAGATCATTTATCTTGACACTACTCGAGAGAAAAACTTGAACGGAGAGTTCCTCATGTAATTTCTGGAACCATGCTTAATCATGTTATTGTCCAGATCTGTTGCTGAACCATATCATTAAGTGGAGAAACTGACCGTAAATCAGCAATTTGGGGCAACCTCACCCCATGTTTCCCTGACTACCTGGTGCCTTCCCCTCCCTGTGTTCTCCAAAATCACCAAAATAGTCCCTTAACCATGAGCCACAGCTACAGCATTGAGAACTAACATATCCACCGTAAATAAAATAACCTCACATAAAAGCA

Function

symbol description
pgm1 Predicted to enable phosphoglucomutase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be active in cytosol. Is expressed in central nervous system; digestive system; myotome; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1).

NR:

description
phosphoglucomutase-1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811826.1 True 2379 mRNA 0.50 11 12720091 12730969

Neighbor

gene id symbol gene type direction distance location
efcab7 efcab7 coding upstream 2406 12703144 ~ 12717685 (+)
alg6 alg6,LOC102784959 coding upstream 29833 12670221 ~ 12690258 (+)
foxd3 foxd3,LOC102785247 coding upstream 56198 12661919 ~ 12663893 (+)
atg4c atg4c coding upstream 197657 12512606 ~ 12522434 (+)
angptl3 angptl3 coding upstream 221044 12494754 ~ 12499047 (+)
cachd1 cachd1 coding downstream 165318 12896287 ~ 12994764 (+)
ak4 ak4,LOC102785469 coding downstream 418881 13149850 ~ 13158641 (+)
dnajc6 dnajc6,LOC102786137 coding downstream 432736 13163705 ~ 13204369 (+)
lepr NA coding downstream 480512 13211481 ~ 13258561 (+)
ttc22 ttc22 coding downstream 562897 13293866 ~ 13305234 (+)
G94813 NA non-coding upstream 800054 11916631 ~ 11920037 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding upstream 1061019 11651522 ~ 11659072 (+)
G94747 NA non-coding upstream 1142830 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 1479854 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 1525161 11194647 ~ 11194930 (+)
G94997 NA non-coding downstream 134943 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 264266 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 376720 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 415336 13146305 ~ 13146795 (+)
LOC120564967 NA non-coding downstream 641475 13372444 ~ 13375668 (+)
lrp8 LOC103355569 other upstream 277011 12161638 ~ 12443080 (+)
znhit6 znhit6,LOC102790327 other upstream 898209 11789135 ~ 11821882 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 1261945 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 1771775 10946932 ~ 10948316 (+)
G94598 NA other upstream 1778847 10916925 ~ 10941244 (+)
ror1 ror1 other downstream 11836 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 274599 13005568 ~ 13100445 (+)
G95046 NA other downstream 442056 13173025 ~ 13220372 (+)
LOC120565776 NA other downstream 604765 13335734 ~ 13342098 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other downstream 648429 13379398 ~ 13382747 (+)

Expression


Co-expression Network