polr2h (polr2h)


Basic Information

Item Value
gene id polr2h
gene name polr2h
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17920839 ~ 17926636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811846.1
AGAGGATGGAGAGGATGAGCACATTGTTTCTCGGCGGCACAATCTGTTTTACACTCAGCAACGGTAATGAATGAAGTTTTACTCTAATAAGATATCTAGCGCACACTTTAAACACACGTTGCCACACAGAGAAACTGGGTGACTGCGACGTTATTCTGTGCACAATATAATAAGAGAACGTCTTCGTATTTGAGACCAGGACAGAGATGGCTGGAATTCTGTTTGAGGACATCTTTGATGTAAAGGACATTGATCCCGATGGCAAGAAGTTTGACAGAGTATCTCGTCTACATTGTGAAAGTGAATCTTTTAAGATGGACCTTATCTTGGATGTGAACATTCAGATCTATCCTGTTGATCTTGGCGACAAGTTCAGACTGGTTATTGCCAGCACGTTATATGAAGATGGAACGCCAGATGACGGAGAGTACAATCCTCAGGATGACCGGCCATCTAGGGCGGACCAGTTTGATTATGTGATGTATGGGAAGGTTTACAAGATAGAGGGCGATGAGACTTCAACAGAAGCAGCCACACGCCTCTCTGCCTACGTGTCTTACGGTGGCCTTCTCATGAGGCTGCAGGGAGATGCCAACAACCTTCACGGCTTTGAGGTGGACTCCAGGGTCTACCTCCTCATGAAGAAACTGGCCTTTTAAAACCCAACTCTGCCTGCCCACTTACCCTGGTTCTTCCACTGCCACAGTCAACTTTAAAGTCCTAACGAACTgcatactgaaaacatttgtACTCCCAAATCGGAGCACATGGCCATTATCCAAGAGCAGCTCACAGACATAACACATGGATGCTGaagaaaaaatatttagtttttttttttttttttacttttgtattaCAAAATGTTTCCTCCAAGGAGATGGACTACATATTTAAGACTGTGACACTTAAGAACTGCTGCAACCTCCATCTGCTGGCAAACTGTAAATAaagatttcttttattaaaaatCATTCTAAGATTGT
>XM_039811847.1
TAAAACCTAGCAATGGTTAAAACTGTTACCGATATATTTTCAACCGGAAGTAGTTTGCGTGTCAGAGGATGGAGAGGATGAGCACATTGTTTCTCGGCGGCACAATCTGTTTTACACTCAGCAACGACCAGGACAGAGATGGCTGGAATTCTGTTTGAGGACATCTTTGATGTAAAGGACATTGATCCCGATGGCAAGAAGTTTGACAGAGTATCTCGTCTACATTGTGAAAGTGAATCTTTTAAGATGGACCTTATCTTGGATGTGAACATTCAGATCTATCCTGTTGATCTTGGCGACAAGTTCAGACTGGTTATTGCCAGCACGTTATATGAAGATGGAACGCCAGATGACGGAGAGTACAATCCTCAGGATGACCGGCCATCTAGGGCGGACCAGTTTGATTATGTGATGTATGGGAAGGTTTACAAGATAGAGGGCGATGAGACTTCAACAGAAGCAGCCACACGCCTCTCTGCCTACGTGTCTTACGGTGGCCTTCTCATGAGGCTGCAGGGAGATGCCAACAACCTTCACGGCTTTGAGGTGGACTCCAGGGTCTACCTCCTCATGAAGAAACTGGCCTTTTAAAACCCAACTCTGCCTGCCCACTTACCCTGGTTCTTCCACTGCCACAGTCAACTTTAAAGTCCTAACGAACTgcatactgaaaacatttgtACTCCCAAATCGGAGCACATGGCCATTATCCAAGAGCAGCTCACAGACATAACACATGGATGCTGaagaaaaaatatttagtttttttttttttttttacttttgtattaCAAAATGTTTCCTCCAAGGAGATGGACTACATATTTAAGACTGTGACACTTAAGAACTGCTGCAACCTCCATCTGCTGGCAAACTGTAAATAaagatttcttttattaaaaatCATTCTAAGATTGT
>XM_039811848.1
GGCTGCCTCCCTGGAACTCATACCAGGACAGAGATGGCTGGAATTCTGTTTGAGGACATCTTTGATGTAAAGGACATTGATCCCGATGGCAAGAAGTTTGACAGAGTATCTCGTCTACATTGTGAAAGTGAATCTTTTAAGATGGACCTTATCTTGGATGTGAACATTCAGATCTATCCTGTTGATCTTGGCGACAAGTTCAGACTGGTTATTGCCAGCACGTTATATGAAGATGGAACGCCAGATGACGGAGAGTACAATCCTCAGGATGACCGGCCATCTAGGGCGGACCAGTTTGATTATGTGATGTATGGGAAGGTTTACAAGATAGAGGGCGATGAGACTTCAACAGAAGCAGCCACACGCCTCTCTGCCTACGTGTCTTACGGTGGCCTTCTCATGAGGCTGCAGGGAGATGCCAACAACCTTCACGGCTTTGAGGTGGACTCCAGGGTCTACCTCCTCATGAAGAAACTGGCCTTTTAAAACCCAACTCTGCCTGCCCACTTACCCTGGTTCTTCCACTGCCACAGTCAACTTTAAAGTCCTAACGAACTgcatactgaaaacatttgtACTCCCAAATCGGAGCACATGGCCATTATCCAAGAGCAGCTCACAGACATAACACATGGATGCTGaagaaaaaatatttagtttttttttttttttttacttttgtattaCAAAATGTTTCCTCCAAGGAGATGGACTACATATTTAAGACTGTGACACTTAAGAACTGCTGCAACCTCCATCTGCTGGCAAACTGTAAATAaagatttcttttattaaaaatCATTCTAAGATTGT

Function

symbol description
polr2h Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2H (RNA polymerase II, I and III subunit H).

NR:

description
DNA-directed RNA polymerases I, II, and III subunit RPABC3

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03016 RPB8, POLR2H; DNA-directed RNA polymerases I, II, and III subunit RPABC3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811846.1 True 986 mRNA 0.43 6 17921953 17926636
XM_039811847.1 False 918 mRNA 0.43 6 17921890 17926636
XM_039811848.1 False 813 mRNA 0.43 6 17920839 17926636

Neighbor

gene id symbol gene type direction distance location
ncl ncl coding upstream 45532 17864337 ~ 17875307 (+)
LOC120566214 NA coding upstream 48428 17872278 ~ 17872411 (+)
LOC120566229 NA coding upstream 48992 17871710 ~ 17871847 (+)
LOC120566228 NA coding upstream 52037 17868666 ~ 17868802 (+)
LOC120566215 NA coding upstream 54158 17866548 ~ 17866681 (+)
mfsd8l1 mfsd8 coding downstream 1967 17928603 ~ 17941735 (+)
LOC120565952 NA coding downstream 755434 18682070 ~ 18683397 (+)
LOC120565951 NA coding downstream 757562 18684198 ~ 18685748 (+)
LOC120565634 NA coding downstream 762583 18689219 ~ 18701367 (+)
LOC120565635 LOC103364550,LOC102304031,LOC101475589 coding downstream 775258 18701894 ~ 18712465 (+)
G96273 NA non-coding upstream 28441 17891652 ~ 17892398 (+)
LOC120565502 NA non-coding upstream 221791 17670680 ~ 17699048 (+)
LOC120564955 NA non-coding upstream 284119 17620798 ~ 17636720 (+)
G96202 NA non-coding upstream 497561 17423065 ~ 17423278 (+)
G96160 LOC100701835,LOC102794991,LOC101468118,LOC101061816 non-coding upstream 659809 17257393 ~ 17261030 (+)
G96341 NA non-coding downstream 659992 18586628 ~ 18586965 (+)
G96353 NA non-coding downstream 686393 18613029 ~ 18613260 (+)
G96361 NA non-coding downstream 692922 18619558 ~ 18621342 (+)
G96372 NA non-coding downstream 733006 18659642 ~ 18659881 (+)
G96398 NA non-coding downstream 817880 18744516 ~ 18744857 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 61428 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 1544390 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 1619839 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 2288027 15523929 ~ 15632812 (+)
dennd1b NA other upstream 2996994 14810368 ~ 14923845 (+)
nmur1a LOC103368681,LOC104952433 other downstream 720067 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 855964 18782600 ~ 18785636 (+)
G96513 NA other downstream 1604131 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 2622363 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 3484700 21411336 ~ 21441558 (+)

Expression


Co-expression Network