sec22bb (LOC104918424,LOC104948961,LOC100705437,LOC106584381,LOC103354218,LOC106613829)


Basic Information

Item Value
gene id sec22bb
gene name LOC104918424,LOC104948961,LOC100705437,LOC106584381,LOC103354218,LOC106613829
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25653862 ~ 25663704 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811880.1
TGACACACAAAGCTCTTGCGTTTCCGGCCAGCTCAGCGCCTCAGCCCTGTGGTGTTGTCAGTTTACAGCCTCTGCCAAACCCAGTCTCAGTTTACCTGGAACATTTTTAGTGGGCAGCGGAACCGGACATCGCGGAGAGATGGTGCTGCTGACGATGATCGCTCGGCTGGCTGACGGACTGCCGTTAGCCGCTTCAATGCAGGAGGACGAGCAGGGAAGTGAAAAGTTGGGTCGGGACCTTCAGCAGTATCAGAGTCAAGCTAAGCAGCTCTTCAGGAAACTCAACGATCAGAGTCCCACACGCTGCACTTTAGAGGCTGGCTCCATGTCATTTCACTATGTTATAGAGAAAGGAGTGTGCTACCTTGTGCTGTGTGAAGCCAGCTTTGCTAAGAAGCTGGCCTTTGCTTACCTTGAAGACCTGCAGGCAGAGTTTCATGAGCAGCATGGAAAGAAGGTCCCCACAGTTTCCCGGCCCTACTCCTTCATTGAATTTGACACCTACATCCAAAAAACCAAGAAGTCGTACATTGACAGCCGAGCACGAAGGAATCTGGGCAGCATCAACACAGAGCTCCAGGACGTACAGAGGATCATGGTGGCTAACATAGAGGAGGTGCTGCAGAGAGGAGAGGCTCTCTCGGCGCTGGACTCCAAGGCCAGCAACTTGTCCAGCCTGTCGAAGAAGTACAGGAGCGACGCCAAGTATCTGAATACCCGCTCCACCTATGCCAAGCTGGCAGCCGGTGGTGTCTTTTTCATCATGCTCATTGTCTATGTGCGCTTCTGGTggctctgagagagagagaaaagagaagaagtggAAAATGAGCTGCACAGAGTCTGCAGACACTTAAGAAAAGCTGTCACCTTTGACTAAAAACAGGATCCCTGCTCTTAAAGACTTTGCAGACATACCACCACCCATTTTGTTCTCACTTGTCCATGGATGTGTGATCTGAATATAAATGATGTCATAATGCATAGTTTTATTATTAACAATCATACAGTAATGCGCTAGTGGAAGGAaatgagtgaatgtgtgcgtgcgtgggttGATTGCGCAGTTTATTTGCAGGTGATTAGTTGTGGAGGGAAAATGAAGAGAAACAGAAATGTCCTGTTTTGTGAGTTTCCAAagctgtactgtactgtactgtaacagGACTGATTTAATACGTTTAGTGTTTACTGTCTAATAATAcagaaaagagcaaaaaaaaaactatttatccTAAGCACTTCATATGGGTAACTGCGTTCTTtaacattataatagtagtagtagatgGCTTGACGGGCCTTGACTACCCAGTTACAAAAAATTGGAAAACATGGCATTCATTCTTTTAGTTCTTTTAGTTGGCTCAGCaacaaaataggaaaagtaATTAAGTTTTCCTCTTTATGGGATATCCAACATTTATTAGGGGGTCAGACAAGGGGGagggtgatgtttttttttttttttactttttttgggcGAGCAGGGGTGGATCATTTAATTTTACTTACCCCAAATTGATATTTCAGCCTTCCCTAGCGAGATGATTTATAATTTTCGTTTTTTAAAGTATGCAATATTCTCAAGACAGTGGTTTAGTATGCACAGTGGGTCATAAAGGTGCCCTTAATAATCTTGTCACAgctttatttcatattttcccATCACAGTCAACTAGCTTGTAGAAatatgggtaacactttacttgaaggtatctacataagagtgacatgacactgtcatgacacatgaaccctaaccctaacttgtcatgacaaaatgaTGACGAATGATACTGTCTGACAGAAGCGTTGTGTCAttaacgtttatgacttgttcatGACACATtgatgacagtgtcatgtcactcttatgtagataccttcaagtataGCATAACCGAAATATGTCAATAATgataaacaaaaaatatggaTATTCATGTTTACGGATAATACTGATTAAATGAGCTCTACCAGCAGTAGTTCCTCCCCTTCACTTTAGcattcatcaaaacaaaaagttaaATGTGTCACATCAAGCTGGCCTATGTCGTAATTCAAGTGCAGCCTATTAGTATCTCTTTATTCTAAAATAGAGAGTGGCTGGAATATTCATACTCCCTTTATTGCACCGTGGCTGTGTGGACCCGCACCTTTCTGTTAGCaggcatataaaaaaaaaaattaaaaaaagtatgtCTTGTTGAAgatgcctttttattttgtgtaaagTTTCCACATCTAGACTCAATTTAAAAGTGGACTAAGGCTGAGAGACACAGGTACTCACGGCTGAAAAGGACaccttctctttttctgttctgtCTGCTATCTATGAATAaaatcatttgcacaaagca
>XM_039811881.1
TGACACACAAAGCTCTTGCGTTTCCGGCCAGCTCAGCGCCTCAGCCCTGTGGTGTTGTCAGTTTACAGCCTCTGCCAAACCCAGTCTCAGTTTACCTGGAACATTTTTAGTGGGCAGCGGAACCGGACATCGCGGAGAGATGGTGCTGCTGACGATGATCGCTCGGCTGGCTGACGGACTGCCGTTAGCCGCTTCAATGCAGGAGGACGAGCAGTTGGGTCGGGACCTTCAGCAGTATCAGAGTCAAGCTAAGCAGCTCTTCAGGAAACTCAACGATCAGAGTCCCACACGCTGCACTTTAGAGGCTGGCTCCATGTCATTTCACTATGTTATAGAGAAAGGAGTGTGCTACCTTGTGCTGTGTGAAGCCAGCTTTGCTAAGAAGCTGGCCTTTGCTTACCTTGAAGACCTGCAGGCAGAGTTTCATGAGCAGCATGGAAAGAAGGTCCCCACAGTTTCCCGGCCCTACTCCTTCATTGAATTTGACACCTACATCCAAAAAACCAAGAAGTCGTACATTGACAGCCGAGCACGAAGGAATCTGGGCAGCATCAACACAGAGCTCCAGGACGTACAGAGGATCATGGTGGCTAACATAGAGGAGGTGCTGCAGAGAGGAGAGGCTCTCTCGGCGCTGGACTCCAAGGCCAGCAACTTGTCCAGCCTGTCGAAGAAGTACAGGAGCGACGCCAAGTATCTGAATACCCGCTCCACCTATGCCAAGCTGGCAGCCGGTGGTGTCTTTTTCATCATGCTCATTGTCTATGTGCGCTTCTGGTggctctgagagagagagaaaagagaagaagtggAAAATGAGCTGCACAGAGTCTGCAGACACTTAAGAAAAGCTGTCACCTTTGACTAAAAACAGGATCCCTGCTCTTAAAGACTTTGCAGACATACCACCACCCATTTTGTTCTCACTTGTCCATGGATGTGTGATCTGAATATAAATGATGTCATAATGCATAGTTTTATTATTAACAATCATACAGTAATGCGCTAGTGGAAGGAaatgagtgaatgtgtgcgtgcgtgggttGATTGCGCAGTTTATTTGCAGGTGATTAGTTGTGGAGGGAAAATGAAGAGAAACAGAAATGTCCTGTTTTGTGAGTTTCCAAagctgtactgtactgtactgtaacagGACTGATTTAATACGTTTAGTGTTTACTGTCTAATAATAcagaaaagagcaaaaaaaaaactatttatccTAAGCACTTCATATGGGTAACTGCGTTCTTtaacattataatagtagtagtagatgGCTTGACGGGCCTTGACTACCCAGTTACAAAAAATTGGAAAACATGGCATTCATTCTTTTAGTTCTTTTAGTTGGCTCAGCaacaaaataggaaaagtaATTAAGTTTTCCTCTTTATGGGATATCCAACATTTATTAGGGGGTCAGACAAGGGGGagggtgatgtttttttttttttttactttttttgggcGAGCAGGGGTGGATCATTTAATTTTACTTACCCCAAATTGATATTTCAGCCTTCCCTAGCGAGATGATTTATAATTTTCGTTTTTTAAAGTATGCAATATTCTCAAGACAGTGGTTTAGTATGCACAGTGGGTCATAAAGGTGCCCTTAATAATCTTGTCACAgctttatttcatattttcccATCACAGTCAACTAGCTTGTAGAAatatgggtaacactttacttgaaggtatctacataagagtgacatgacactgtcatgacacatgaaccctaaccctaacttgtcatgacaaaatgaTGACGAATGATACTGTCTGACAGAAGCGTTGTGTCAttaacgtttatgacttgttcatGACACATtgatgacagtgtcatgtcactcttatgtagataccttcaagtataGCATAACCGAAATATGTCAATAATgataaacaaaaaatatggaTATTCATGTTTACGGATAATACTGATTAAATGAGCTCTACCAGCAGTAGTTCCTCCCCTTCACTTTAGcattcatcaaaacaaaaagttaaATGTGTCACATCAAGCTGGCCTATGTCGTAATTCAAGTGCAGCCTATTAGTATCTCTTTATTCTAAAATAGAGAGTGGCTGGAATATTCATACTCCCTTTATTGCACCGTGGCTGTGTGGACCCGCACCTTTCTGTTAGCaggcatataaaaaaaaaaattaaaaaaagtatgtCTTGTTGAAgatgcctttttattttgtgtaaagTTTCCACATCTAGACTCAATTTAAAAGTGGACTAAGGCTGAGAGACACAGGTACTCACGGCTGAAAAGGACaccttctctttttctgttctgtCTGCTATCTATGAATAaaatcatttgcacaaagca

Function

NR:

description
vesicle-trafficking protein SEC22b-B

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08517 SEC22; vesicle transport protein SEC22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811880.1 True 2366 mRNA 0.42 6 25653862 25663704
XM_039811881.1 False 2354 mRNA 0.42 5 25653862 25663704

Neighbor

gene id symbol gene type direction distance location
npl npl coding upstream 40449 25601881 ~ 25613413 (+)
abhd17ab abhd17a,LOC102787648,LOC100697085,LOC102288803,LOC101468085 coding upstream 177627 25468399 ~ 25476235 (+)
zgc:77486 LOC104918432,LOC103358789,LOC101467589,LOC102787348,LOC100705167 coding upstream 186859 25457253 ~ 25467003 (+)
plin3 plin4 coding upstream 196703 25444399 ~ 25457159 (+)
mpnd mpnd coding upstream 425581 25219482 ~ 25228281 (+)
notch2 LOC104948964,LOC103354216 coding downstream 14832 25678536 ~ 25729476 (+)
rex1bd clg23h19orf60,LOC104918420,LOC103354213,LOC102791516,LOC102205217 coding downstream 85171 25748875 ~ 25755656 (+)
tmem59l tmem59l,LOC104948969 coding downstream 106289 25769993 ~ 25784438 (+)
ssbp4 ssbp4,LOC102228095 coding downstream 177098 25840802 ~ 25937832 (+)
fkbp8 fkbp8 coding downstream 275044 25938748 ~ 25951039 (+)
G98196 NA non-coding upstream 45471 25558113 ~ 25608391 (+)
LOC120565050 NA non-coding upstream 132575 25520872 ~ 25521287 (+)
G98188 NA non-coding upstream 138120 25515050 ~ 25515742 (+)
G98186 NA non-coding upstream 141610 25511856 ~ 25512252 (+)
G98177 NA non-coding upstream 174258 25479348 ~ 25479604 (+)
G98280 NA non-coding downstream 75427 25739131 ~ 25740549 (+)
LOC120565749 NA non-coding downstream 122621 25786325 ~ 25837747 (+)
G98312 NA non-coding downstream 220812 25884516 ~ 25925050 (+)
G98363 NA non-coding downstream 471533 26135237 ~ 26136630 (+)
G98384 NA non-coding downstream 528164 26191868 ~ 26194089 (+)
G98194 NA other upstream 106773 25532825 ~ 25547089 (+)
elovl1b LOC106963699,LOC101078639 other upstream 779946 24852287 ~ 24873916 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other upstream 869981 24781918 ~ 24783881 (+)
LOC120565649 LOC103373964,LOC107081966 other upstream 888637 24749017 ~ 24765225 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 1445721 24204341 ~ 24208141 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 66521 25730225 ~ 25738789 (+)
dot1l dot1l,LOC102793654 other downstream 327802 25991506 ~ 26019371 (+)
oaz1a oaz1,LOC104950707 other downstream 371047 26034751 ~ 26039866 (+)
zbtb7a zbtb7a other downstream 619348 26283052 ~ 26295382 (+)
LOC120565098 NA other downstream 675839 26339543 ~ 26342293 (+)

Expression


Co-expression Network