lrrc8c (lrrc8c)


Basic Information

Item Value
gene id lrrc8c
gene name lrrc8c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29742393 ~ 29755409 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811912.1
TTCAGCCTTCGTGCAGAGGGAACAAGAGGGCAAAGTGGAGCGTGAAGGAGACAAAGTCCACGCCCATGGCAGTGGCTTGCAGTAGGCTAGGCATGCCTGCATGGTCTGTGCTCGGAGATCCAGGAAGGTCGGCGGACAGAAGAGAAGGGGGACCGCGCATATCATGTTCCTAAATCCCATCGCTTGAAAGCAGACCACAACTCCAGCTCTCATCTAAAAAGAAGGCATCATGATTCCTGTGATGGAATTCCGGCAGTTCTCTGAACAGCAGCCAGCGTTCAGAGTCCTGAAGCCGTGGTGGGATGTGTTCACCGACTACCTGTCTGTAGTCATGCTCATGATTGGTGTCTTCGGATGCACTCTTCAGGTAATGCAAGATAAGATCATATGCCTTCCTCAGAGAGAGTCTTCAGGGAACACAAGTGAAGTGGAAGTGAAGTCACTGTTACACCTGCAGTCCAATATTTCAGCCGTACCAAGAGAAATGACAGGCCTGAAAACCCAGCTGGATTTTCAACAGTACCTTTTTATCAATCAGATGTGTTATGAGAAAGCTCTGCATTGGTATGCCAAGTTCTTTCCTTATTTGGTTCTTATACACACTCTTATTTTCATGGTGTGTAGCAACTTCTGGTTCAAATTCCCTGGCTCGAGCTCTAAAATAGAGCATTTCATCTCCATGCTCAGCAAGTGCTTCGACTCTCCCTGGACCACACGAGCTTTGTCGGAGGTGTCTGGAGAAAATCCTGAAGAAAAGGATAAAAAGAGTGCCACTTCTAGGTCCAACATTGCTTTGTCTCCCGGAGAaggaagtttggagaagacacaGTCCCTCCGGTCTATCCCAGAAAAGATTGTAGCTGACAAACCATCAGCAAGTGCTCTTGATAAAAAAGAGGGTGAACAAGCTAAAGCTCTTTTTGAAAAGGTGAAGAAATTCCGTTTGCACGTTGAGGAAGGAGACATTCTCTATCTGATGTATGTCCGGCAGACAGTATTCAAGGTGTTTAAATTCCTCCTGATCATTGCCTATAATAGTTCTCTCGTGAATAAAGTGCGAAATAGAGTGAGTTGCCAAGTTGAGATCCAGGACATGACAGGCTACCGTAACTTTCAATGCAACCACACTATGGCTCATCTGTTTTCTAAGCTTTCTTACTGTTACCTGTGTTTAGTGGCTGTCTATGGATTAACAAGCCTCTACACCTCTTACTGGCTGTTTTACCGCTCACTCAAAGAATACTCCTTTGAGTATGTGCGACAGGAAACAGGCATCAATGACATCCCAGACGTCAAAAACGACTTTGCTTTCATGCTACACATGATTGATCAGTATGACCCGCTGTATTCTAAACGATTTGCAGTTTTTCTATCAGAGGTCAGTGAGAACAAACTGAAACAGCTCAACCTGAACAATGATTGGACCGCGGATAAATTGCGTCAGAGACTCCAGACTAACAGCAACAACAGACTTGAACTTCAGCTATTCATGCTCCCTGGGTTACCCGACACTGTCTTTGAGTTGACAGAGCTGCAGTCACTCAAGCTGGAGATCATCAACAATGCCACCATCCCTGGCTCAATCTCTCAGCTAGAAGACCTTCAGGAGCTGTCTCTTTACCAATGCTCTTTAAAGTCGCAAACAACCGCTACCTCCTTCCTCAAAGAGAACCTGAAAGTGCTTCGTGTGAAATTCGATGATAACAGGGAACTTCCAAACTGGATGTATGTCCTGCGCAACTTAGAGGAGCTCTATCTCACTGGGTCTCTAAGCCCTGATGCCTCCAAAAATATAGCTCTTGAGTCACTGCGGGAGATGAAGGGTTTGAAATTGCTCTATCTTAAGAGCAATTTGACCAAGATACCTCAGTCTATAGTGGATGTCTCCAGCCATCTGCAGCGGCTGTACTTACACAATGATGGCACTAAGCTCGTAATGCTCAACAACCTGAAAAAGATGACCAACTTGATCGAGCTGGAGCTAGTGCATTGTGATCTGGAACGCATCCCACATGCAATCTTCAGCCTAACCAATCTGCAAGAGCTTGACCTGAAAGAGAATAACCTTCGCTCAATAGAGGAGATCATCAGCTTCCAACATCTTCGAAAACTCACTTGCCTTAAACTTTGGCACAATGGTATCATGTACATCCCAGAGCATATCAAGAAGCTTGGCAGCCTAGAGCGCCTCTACTTCAGTCACAACAAGATCGAGATATTGCCTTCGCACCTGTTCTTGTGCAACAAGCTGCGCTACCTGGACGTGTCCAACAATGACATCCGATTCATCCCCCCAGAAATTGGAGTTCTTCAGAGTCTACAGTATTTCTCGGTCACCTGTAACAAAATCGAAAATCTACCAGATGAGCTCTTCTTTTGCAAAAAGCTCAAAACACTAAAGCTTGGCAAAAACTCACTGTCCTCACTGTCGCCAAAGATTTCCTACCTAGCTCAACTGACGTACTTGGACCTCAAAGGCAACCACTTTGAGCTTCTGCCCCAAGAGCTCGGTTGCTGTCGTGCATTGAAGCACAGTGGCCTTATAGTGGAAGAGACACTGTTTCAGACATTGCCTCCTGATGTCAGGGACCAAATGAAGGCTGAGTGAGATGCCTTTT

Function

symbol description
lrrc8c Predicted to act upstream of or within ion transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human LRRC8C (leucine rich repeat containing 8 VRAC subunit C).

NR:

description
PREDICTED: leucine-rich repeat-containing protein 8C

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811912.1 True 2618 mRNA 0.46 4 29742393 29755409

Neighbor

gene id symbol gene type direction distance location
lmo4b lmo4 coding upstream 305897 29422379 ~ 29436496 (+)
hs2st1b LOC103365674,LOC100712187 coding upstream 368927 29352402 ~ 29373466 (+)
LOC120565897 cldn18 coding upstream 410615 29326517 ~ 29331778 (+)
sox14 sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 coding upstream 473957 29266362 ~ 29268436 (+)
hdlbpa hdlbp coding upstream 677291 29042904 ~ 29065102 (+)
lrrc8db LOC102192663,LOC101487848,LOC104931916,LOC103368774 coding downstream 8260 29763669 ~ 29772684 (+)
brdt NA coding downstream 446123 30201532 ~ 30244918 (+)
ephx4 ephx4 coding downstream 490395 30245804 ~ 30261307 (+)
btbd8 kiaa1107,LOC103368715 coding downstream 507568 30262977 ~ 30311025 (+)
LOC120565064 clg23h1orf146,LOC104946869 coding downstream 555793 30311202 ~ 30314472 (+)
G99299 NA non-coding upstream 46460 29695607 ~ 29695933 (+)
G99292 NA non-coding upstream 148770 29593365 ~ 29593623 (+)
G99261 NA non-coding upstream 303671 29438162 ~ 29438722 (+)
G99238 NA non-coding upstream 585286 29156684 ~ 29157107 (+)
G99217 NA non-coding upstream 707987 29019535 ~ 29034406 (+)
G99327 NA non-coding downstream 4634 29760043 ~ 29760366 (+)
G99329 NA non-coding downstream 18908 29774317 ~ 29775080 (+)
G99338 NA non-coding downstream 122463 29877872 ~ 29878121 (+)
G99356 NA non-coding downstream 284433 30039842 ~ 30040895 (+)
G99368 NA non-coding downstream 430298 30185707 ~ 30191840 (+)
G99297 NA other upstream 77303 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 876906 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 967840 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 1596068 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 1658006 28027964 ~ 28084387 (+)
si:ch73-389b16.1 ccdc18 other downstream 672094 30427503 ~ 30429291 (+)
G99545 NA other downstream 1055109 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 1340472 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 1858480 31613889 ~ 31643446 (+)
G99791 NA other downstream 1867289 31622698 ~ 31625796 (+)

Expression


Co-expression Network