LOC120565866 (LOC105938272,LOC105937414,LOC105938273)


Basic Information

Item Value
gene id LOC120565866
gene name LOC105938272,LOC105937414,LOC105938273
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 34454381 ~ 34456956 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811944.1
GCTGTGTGTTGAGAGTGGGGTATAAAACAGGCATCAGTAATCAGTTGCTCTTTCCATCAACACACCAGCTAACTGCAAAGCTCATCGTTTACAGTTGACGTCTTGCTTCAGGATGGCAGCAAAGAAAGTGTTGATAGTGTACGCCCACCAGAGCTCTGGCTCGTTCAGCGCTGCAGCTAAAGATGCCGCAGTGGAAGTTTTGGCTGCTCAAGATTGCACAGTCGAAGTATCTGACCTGTATGCCATGAAGTTCAAAGCCACTGCTACTGCCGAGGAcatcactgGAGAAGTTAAGAACGCTGATCACTTCCGTTATGCGGAGGAGACTAAACTGGCATGGGAGGAAGGAAAACTGTGTGCTGACATCACTGAGGAACAACGTAAACTCACTCAGGCAGACCTCATCATCTTTCAGTTCCCCATGTACTGGTTCACCGTTCCTGCTATCATGAAGGGCTGGATTGACCGGGTGCTCACACTGGGCTACGCGTATTCCCAAGAGCAGCGATACAGTCAGGGAGTTTTCAAGGACAAGAGAGCCATGCTGTCCTTCACCACTGGGTCTCCTGAGTCCATGTTCAGTGCAAATGGCATTAATGGAGACATGAATGTCACACTGTGGCCATTACAGAATGGCATCCTGCACTACTGTGGCTTCCAGGTTCTGGCGCCTCAGATCTTCTGGGCTCCGTCCTCAGTTTCTTCTGAGGTACGCAGCACCATGCTGGAAGGCTGGCGTAAACGACTGCAAGGCCTCCTGACAGAGAAACCACTTTCCTTCACACCCTTGGATTGCTTTGATGGAGAGGGTTACCAACTGAAGCCTGAGGTCCATGAGAAACATGCCAGCAAGGAGTATGGACTGACAGTGGGGATCCACCTGGGAAAGGCACTGCCACCCAACAGCCAGATGAAAGCTGGAGTCTGAAGATGGCAGGGTCTTTAAATTGCATAATGGAAAAATAAAGTCTGATCTACTGAC
>XM_039811945.1
TGTGTGTTGAGAGTGGGGTATAAAACAGGCATCAGTAATCAGTTGCTCTTTCCATCAACACACCAGCTAACTGCAAAGCTCATCGTTTACAGTTGACGTCTTGCTTCAGGATGGCAAAGAAAGTGTTGATAGTGTACGCCCACCAGAGCTCTGGCTCGTTCAGCGCTGCAGCTAAAGATGCCGCAGTGGAAGTTTTGGCTGCTCAAGATTGCACAGTCGAAGTATCTGACCTGTATGCCATGAAGTTCAAAGCCACTGCTACTGCCGAGGAcatcactgGAGAAGTTAAGAACGCTGATCACTTCCGTTATGCGGAGGAGACTAAACTGGCATGGGAGGAAGGAAAACTGTGTGCTGACATCACTGAGGAACAACGTAAACTCACTCAGGCAGACCTCATCATCTTTCAGTTCCCCATGTACTGGTTCACCGTTCCTGCTATCATGAAGGGCTGGATTGACCGGGTGCTCACACTGGGCTACGCGTATTCCCAAGAGCAGCGATACAGTCAGGGAGTTTTCAAGGACAAGAGAGCCATGCTGTCCTTCACCACTGGGTCTCCTGAGTCCATGTTCAGTGCAAATGGCATTAATGGAGACATGAATGTCACACTGTGGCCATTACAGAATGGCATCCTGCACTACTGTGGCTTCCAGGTTCTGGCGCCTCAGATCTTCTGGGCTCCGTCCTCAGTTTCTTCTGAGGTACGCAGCACCATGCTGGAAGGCTGGCGTAAACGACTGCAAGGCCTCCTGACAGAGAAACCACTTTCCTTCACACCCTTGGATTGCTTTGATGGAGAGGGTTACCAACTGAAGCCTGAGGTCCATGAGAAACATGCCAGCAAGGAGTATGGACTGACAGTGGGGATCCACCTGGGAAAGGCACTGCCACCCAACAGCCAGATGAAAGCTGGAGTCTGAAGATGGCAGGGTCTTTAAATTGCATAATGGAAAAATAAAGTCTGATCTACTGAC

Function

NR:

description
ribosyldihydronicotinamide dehydrogenase [quinone]-like isoform X3

GO: NA

KEGG:

id description
K00355 NQO1; NAD(P)H dehydrogenase (quinone)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811944.1 True 982 mRNA 0.50 6 34454381 34456956
XM_039811945.1 False 977 mRNA 0.50 6 34454383 34456956

Neighbor

gene id symbol gene type direction distance location
LOC120565861 LOC103354068,LOC104966713 coding upstream 70354 34380747 ~ 34384027 (+)
LOC120565538 cherp coding upstream 360806 34066115 ~ 34093575 (+)
si:ch211-247n2.1 LOC102307905,LOC103372256,LOC102782276,LOC101477182,LOC102211467 coding upstream 390806 34031890 ~ 34063575 (+)
si:ch211-51h4.2 LOC102206538,LOC102309665,LOC102076398 coding upstream 579285 33772446 ~ 33875096 (+)
ect2 ect2,LOC102798372 coding upstream 2042934 32221033 ~ 32411447 (+)
arhgap39 arhgap39 coding downstream 71612 34528568 ~ 34661669 (+)
hyi hyi coding downstream 1011055 35468011 ~ 35477553 (+)
ddx10 ddx10 coding downstream 1216404 35673360 ~ 35678429 (+)
LOC120566096 NA coding downstream 1242869 35699825 ~ 35737010 (+)
LOC120565108 NA coding downstream 1780896 36237852 ~ 36284806 (+)
G100161 NA non-coding upstream 3866 34450281 ~ 34450515 (+)
G100148 NA non-coding upstream 150035 34304090 ~ 34304346 (+)
LOC120565927 NA non-coding upstream 232250 34220623 ~ 34222131 (+)
G100043 NA non-coding upstream 1249635 33204180 ~ 33204746 (+)
G100028 NA non-coding upstream 1374540 33078937 ~ 33079841 (+)
G100159 NA non-coding downstream 45608 34502564 ~ 34507602 (+)
G100199 lrrc41 non-coding downstream 209526 34666482 ~ 34677930 (+)
G100215 NA non-coding downstream 280551 34737507 ~ 34793890 (+)
G100257 NA non-coding downstream 392247 34849203 ~ 34849492 (+)
G100259 NA non-coding downstream 395357 34852313 ~ 34852518 (+)
G100087 NA other upstream 576050 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 691462 33243213 ~ 33762919 (+)
nlgn1 nlgn1,LOC102797975 other upstream 1575748 32436847 ~ 32878633 (+)
LOC120565823 NA other upstream 2686842 31761992 ~ 31767539 (+)
G99803 NA other upstream 2822880 31629816 ~ 31631501 (+)
G100174 calr3 other downstream 47687 34504643 ~ 34507552 (+)
dsg2.1 NA other downstream 1758508 36215464 ~ 36234599 (+)
G100568 lmnb2 other downstream 2016582 36473538 ~ 36475195 (+)
smim24 NA other downstream 2038528 36495484 ~ 36534582 (+)
sass6 sass6,LOC102776185 other downstream 2139085 36596041 ~ 36611746 (+)

Expression


Co-expression Network