LOC120565880 (LOC104960898)


Basic Information

Item Value
gene id LOC120565880
gene name LOC104960898
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 3826863 ~ 3854810 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039811967.1
GTAGCCTTGATGACTGTGACTGGCTGGTTCTCTCCCCCGCGGTGGGATCATCGGGCACAGCGCTGGAGGATGCAGCAGCCACAGACAGCAACTCGGAGATGAAGCTTACTAAGGCCAACCATGCAGGTCGCACAGCGCATGCTCGCTGACCAGACACTATGTGTGGAGCGGACCAATCCGGACTCCCTAGTTATTGTCCTTGGTGTCTTTAACAAAGGAAACCTCACTCATGTACTACCTGTACCATGTACGACCAGAGAGGAGAACATTCTGGATCACTGTTACACCACAGTCAGGGATGCTTATCACGCCGTCCCCCGTGCTGCACTGGGACTCTCTGACCACGTCATGGTTCACCTGATCCCCACctacaggcagaaactaaaGCTCTGCAAACCTGTAGTGAGGACATCAAGGAAGTGGACCAGTGTAGCTGTGGAGTATCTCCAGACGTGCTTGGACTCTACTGACTCGGATGTGTTCAGGACTGCTACCAACAATCTGGATGAGTACACAGAGGCTGTGACGTCATACATCAGCTTCTGTGAGGACTGCTGTGTTCCATCAAGCACCAGGGTGAGTTACAACAATGACAAACCCTGGTTCACAGCCAAACTCAGAAGGCTAAGGTTGGACAAGGCTGAGGTGTTCAGGAgtgtaaacaaaaacagactTAAAGTAGCAAAGTACAAGTTTAGCAAGGCGGTGAAAGAGGCTAACAACAGTACTCTGAGAAACTCAGTTCTCAGCAAACAACTCTACTTCTGTCTGGAGAGGCGTTAAACAGATCACCAGTTTCAAGCCTAGTCTCCCACTCCACCATCGACCGACGCCTAGCCAACGACCTCAATGAGTTCTACTGTCGCTTTGATGGACAAAGGGTCGGTCCTGTAACCATTCCCCTCAACACCTCCCAACAAAGGGTCTTCCCTGATTCCATCCCCCGCGACACCTCCCAACAGTCCTACAGTGCatcacctccacctcccccaccttaaaggtcccccctccacctccccacCCACCTCAGTGACGACTCTTTCCATCAATGAGGAAGACGTCAACAGACTGTTCAGGTGACATAACCCCAGGAAAGCTGCTGGACCGGATGCTGTCTCCCCATCCAGCTTGAAGCACTGTGCTGACCAGCTGTCTCCagtgttcacagacattttcaacacCTCACTGGAGACATGCCACGTGCCAGCCTGCTTCAAGTCCTCAACAATCATCCCTGTTCCCAAGAAGCCAAGGACCACAGGACTTAATGACTTCAGACCTGTCGCCCTGACCTCTGTGCTTATGAAGTCCTTTGAGCGCCTTGTGCTTTCACACTTCAAAGCCATCACCGACCccctcctggaccccctgcagtttgcctacagagCCAATAGGTCTGTCGATGATGCAGTCAACCTGGCCCTCCACTAAATCCTCCGGCACCTGGCCTCCACAGGAAACtacgccaggatcctgtttgtggacttcagctctgcctttaaCACCATCATCCCGGCTCTGCTCCAGGAGAAACTCTCCCTGCTTAgtgtgcctgactccacctgcaggtggatcactgacttcctgtctgacaggaagcagcatgtgaaGCTGGGGAAAGAAATCTCCGactcacagaccatcagcaccggatcccctcagggctgtgttctttc

Function

NR:

description
PREDICTED: homeobox protein OTX1 B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039811967.1 True 1676 mRNA 0.53 2 3826863 3854810

Neighbor

gene id symbol gene type direction distance location
LOC120566051 NA coding upstream 193498 3630184 ~ 3633365 (+)
LOC120565597 sgta coding upstream 252714 3217726 ~ 3574149 (+)
LOC120565455 patj,LOC104952322 coding upstream 478647 3337832 ~ 3348216 (+)
LOC120565438 gadd45b coding upstream 824324 2999620 ~ 3002539 (+)
LOC120565437 LOC104954941,LOC104939024,LOC103367594,LOC105940182,LOC103463144 coding upstream 967745 2845744 ~ 2859118 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding downstream 277053 4131863 ~ 4132573 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding downstream 286768 4141578 ~ 4142106 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding downstream 291683 4146493 ~ 4151003 (+)
LOC120565402 LOC106958509,LOC103391927,LOC106963510,LOC107690788 coding downstream 306099 4160909 ~ 4161442 (+)
LOC120565392 LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799 coding downstream 489849 4344659 ~ 4345129 (+)
G92887 NA non-coding upstream 43178 3782061 ~ 3783685 (+)
G92886 NA non-coding upstream 57039 3763072 ~ 3769824 (+)
G92885 NA non-coding upstream 95103 3717105 ~ 3731760 (+)
G92883 NA non-coding upstream 124146 3682373 ~ 3702717 (+)
G92881 NA non-coding upstream 179187 3644289 ~ 3647676 (+)
G92894 NA non-coding downstream 10896 3865706 ~ 3924299 (+)
G92893 NA non-coding downstream 21403 3876213 ~ 3889141 (+)
G92915 NA non-coding downstream 126097 3980907 ~ 4026271 (+)
G93128 NA non-coding downstream 248044 4102854 ~ 4103868 (+)
G93151 NA non-coding downstream 313511 4168321 ~ 4197972 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 3081 3714919 ~ 3823782 (+)
G92848 NA other upstream 220038 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 231475 3540034 ~ 3595388 (+)
G92838 NA other upstream 336242 3425734 ~ 3490621 (+)
G92826 NA other upstream 362657 3351767 ~ 3464206 (+)
G93150 NA other downstream 319792 4174602 ~ 4217826 (+)
LOC120565391 NA other downstream 429945 4284755 ~ 4313515 (+)
trmt1l trmt1l other downstream 830414 4685224 ~ 4713233 (+)
G93613 NA other downstream 2180559 6035369 ~ 6051520 (+)
G93638 NA other downstream 2347275 6202085 ~ 6214017 (+)

Expression


Co-expression Network