LOC120565897 (cldn18)


Basic Information

Item Value
gene id LOC120565897
gene name cldn18
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29326517 ~ 29331778 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812006.1
TTTAGGTTTTTCACAAACGcaatttgcattttaaaaaaacatgattcaagTATAATAATTAGCAATTAAAGAACCACATTATGTTTAGCGTTTACTGACCAGAAATACTAAGCAACATTAATCTTCACTAATACGCTCCACCCAACTTCTTCTGTACATGACTGGGCTGTGTGCAAACAAGCAGGGTCATTGGTGAAGTCCTTTTTGACTTCACACCTGCCGATATCATATTCAAACACACAGCCGCACTGCTGAGGAGCGGCCGATAGCTTTTGAATCTTGAattttgagtcttttttttttcgtccCCAGCCAGCAGAAAAAATACAGCAGCATGGCAGCCACTCTCTGTCAAGTAATGGGCTTGCTTTTGAGTTTGTTAGGGGTGGCAGGAATAATCGCAGCGACGGGGATGGACCAGTGGGCAACCGAAGACCTCTTTGATAACCCTGTGACGGCCATTTTCTCCTACTCAGGCCTGTGGAATTCATGCGTCCGCCAGAGCTCCGGCTTCACAGAGTGCCGACCGTATTTCACCATTCTGGGACTGCCAGCTCTGCTCCAAGCAGTGCGGGCCCTAATGATTGTTGGTATTGTTCTCGGAGCCATCGGCTGCCTGATCGCCATCTTTTCAATGAAGTGCTTGAAAATGGGGAACATGGAGGACAACATCAAAGCCACAATGACTCTGACTTCTGGAATCATGTTTCTTCTTGCAGGCGTGTGTGGCATTGCTGGGGTGTCGGCCTTTGCTAACTTGATTGTGCAAAGTTTTCGGTTCACAACCTTCGCCGATGGTGGGTTCAGTTCATTTGGAGGAGCGGGTATTGGTGGACTCTCAGGAAATCTGACTCCAAGGTACACTTTTGGCCCTGCTCTTTTCGTGGGCTGGATCGGTGGAGCTATCTTGGTCGTTGGAGGCGTCATGATGTGTCTGGCCTGCCGTGGAATGACTCCAGATAGAAACAGAGCGTACGACGGGATGGCCTACAAAGCTGCTTCTCACCACACTATCTACAAGTCGGACACCAGACCCCGTCCAGCCATCAATGACTCCTACAAGGCCCAGAGTGTGGAGGGAAGGCAGTCCAACCAGAGATTTGACTACGTGTAGAATCATTTCACTCCTATAGATACCTCTCTTTTATATTCTGCTGCTGTGTGATGATGTTTTTCTCTTGTCTTTTGCCTGCATTCATGAGAAGAGACTTTTTCTTATTTCTCTCTACTATAATTTGGCTGAACTGCAAAACATTTAaggtatttttttattgtgtttttaataacaTCATATA

Function

symbol description
cldn18 Predicted to enable structural molecule activity. Predicted to be located in bicellular tight junction and plasma membrane. Predicted to be integral component of membrane. Is expressed in kidney. Orthologous to human CLDN18 (claudin 18).

NR:

description
PREDICTED: claudin-18

GO: NA

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812006.1 True 1295 mRNA 0.46 5 29326517 29331778

Neighbor

gene id symbol gene type direction distance location
sox14 sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 coding upstream 58081 29266362 ~ 29268436 (+)
hdlbpa hdlbp coding upstream 261415 29042904 ~ 29065102 (+)
dtymk dtymk coding upstream 359934 28959154 ~ 28966583 (+)
agxta agxt,LOC102212595,LOC102798621 coding upstream 367421 28953375 ~ 28959096 (+)
fam20b fam20b,LOC102783880 coding upstream 439459 28865643 ~ 28887058 (+)
hs2st1b LOC103365674,LOC100712187 coding downstream 20624 29352402 ~ 29373466 (+)
lmo4b lmo4 coding downstream 90601 29422379 ~ 29436496 (+)
lrrc8c lrrc8c coding downstream 410615 29742393 ~ 29755409 (+)
lrrc8db LOC102192663,LOC101487848,LOC104931916,LOC103368774 coding downstream 431891 29763669 ~ 29772684 (+)
brdt NA coding downstream 869754 30201532 ~ 30244918 (+)
G99238 NA non-coding upstream 169410 29156684 ~ 29157107 (+)
G99217 NA non-coding upstream 292111 29019535 ~ 29034406 (+)
LOC120566147 NA non-coding upstream 333907 28992228 ~ 28992610 (+)
G99189 NA non-coding upstream 354431 28970487 ~ 28972086 (+)
G99108 NA non-coding upstream 638399 28687882 ~ 28688118 (+)
G99261 NA non-coding downstream 106384 29438162 ~ 29438722 (+)
G99292 NA non-coding downstream 261587 29593365 ~ 29593623 (+)
G99299 NA non-coding downstream 363829 29695607 ~ 29695933 (+)
G99327 NA non-coding downstream 428265 29760043 ~ 29760366 (+)
G99329 NA non-coding downstream 442539 29774317 ~ 29775080 (+)
ralgps2 ralgps2 other upstream 461030 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 551964 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 1180192 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 1242130 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 1493662 27659696 ~ 27832855 (+)
G99297 NA other downstream 331855 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 1095725 30427503 ~ 30429291 (+)
G99545 NA other downstream 1478740 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 1764103 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 2282111 31613889 ~ 31643446 (+)

Expression


Co-expression Network