uhrf1 (uhrf1,LOC102797162)


Basic Information

Item Value
gene id uhrf1
gene name uhrf1,LOC102797162
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 16301923 ~ 16317498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812009.1
AAGAATAACTCATTGATCAGTCTCCAACAAGCCATAACGTTAGAGAGTTGGTCTTGTAAATCTCACACAGAAGTTATTTGGAGAAAACGTGCGCGTTACTCCGTAAACGTAAATTTCTTGTTTTTTCACTTCACACGAACAAACAGGGCAGCTGCAATGTGGATTCAAGTGCGCACGATGGATGGGAAGGAAACCCACCGGGTGGATTCCCTGTCCAAACTCACCAAGGTGGATGAGCTGCGTCTCAAAATCACGGAGCTCTTCAAGGTGGAGCCAGAGAAGCAGAGGCTTTTCTACCGTGGCAAGCAGATGGAGGACGGTCATACCATATTTGACTACAACGTGGGTCTAAATGACATAGTGCAGCTGCTTGTTAGACAGATTCCAACTGTTGAAGTCGCCAAAAGCAAGGACAAAGAAGCCGAGCTCTCCGACTCTGATTCTGGCTGTGGCTCAACCCAGAGTGAGTCTGACAAGAGCTCAACTCACGGTGAGGTAGAGGTTCAGACCGCCAGCACCTCTGCCCAGACAAACACCACAGAGCTCATCGACCCGGGCTTCGGATTTTACAAgACCAATGAGTTGGTGGATGCAAGGGACTTGAACATGGGTGCCTGGTTTGAGGCCCAGATCGTGAATGTTACTAAGACAACAAAGACGCCTAAAGAAGAGGCTGCTGAGGCACAGCCAGCAGAGGACGAGATACTGTACCATGTTAAATACGAAGACTACCCAGAGAACGGGGTGATTCAGTTGCTGGCTAAGGATGTTCGCCCGCGGGCCCGTACGGTGTACCAGTGGCACCAACTGGAGGCAGGTATGGTTGTTATGGTCAACTACAACCCAGACGACCCCAAGGAGCGTGGCTACTGGTACGACGCCGAGAtccagaggaagagggagacgCGCACCGTGCGAGAGATCTACGCCAAGATTATCCTTGGTGATGCTGGTGACTCTCTTAATGATTGCCGGATCATGTTCCTGACTGAAATCTACAAAATCGAAGAGCCTGGTTCTCTGGGTGACACCCCAGCTGGATCTGAGAGTCCATTGAAAAGATCAAATGGGCCTGAGTGCAAGCACTGTAAGGATGATCCCAAGAAAAAATGTCAGTGGTGCAACTGCCATATCTGTGGCATCAAGCAGGACCCTGACAAACAGTTGCTGTGTGACGAATGTGACATGGCCTATCACATTTACTGCCTGAACCCTCCGCTCACTTCCATCCCGGACGACGAGGACTGGTATTGCCCAGGTTGCCGTACTGACGCCAGTGAAGTTGTGTTGGCCGGAGAGAAGCTGAAGGagagcaagaagaaagccaAGATGGCTTCTGCTAGCTCCTCCAGCCAGAGGGACTGGGGCAAGgGAATGGCCTGTGTTGGTCGAACCAAGCAGTGCACCATCGTCCCGTCCAACCACTACGGCCCAATCCCCAGCATTCCCGTCGGGTCCCTGTGGAAGTTTAGAGTGCAGGTCAGTGAATCTGGTGTCCACAGGCCTCATGTAGCTGGGATTCACGGCAGGAGTAATGATGGTGCCTACTCTCTGGTCCTGGCAGGAGGATATGAGGATGACGTGGATGATGGTAATGAGTTCACTTACACTGGCTCTGGAGGGCGAGATCTTTCTGGAAACAAGAGGACTGCTGAGCAGTCGTGTGATCAGACACTTACCCACATGAACCGGGCGGTGGCTCTCAACTGCAACATCCCCGTCAACGACAAAAACGGAGCGGAGGCCAAGAACTGGAAGGAAGGCAAACCAGTTAGAGTTGTGCGCAGCTGCAAGGGTCGCAAGCACAGTAAATACTCCCCCGAGGAAGGAAACCGATATGATGGCATATATAAGGTGGTGAAGTACTGGCCAGCCAAGGGCAAGTCTGGTTTCTTGGTTTGGCGGTATCTGCTGAGGCGTGATGATGATGAGCCGGCACCATGGACCAGAGAGGGCAAGGAACGCATCAAGAAGCTCGGTCTCACCATGCAGTATCCTGCTGGCTatcagaaggagaaagagaacaaaaatgaagtggaggaggaggaggcgacaCCGAGCAAggcaaagaggaagagaaaatcTCAGGGCAGCGATTCCTCCAAGACCTCACCAGCCAAGACTCCTAAGAAAATAAAGGTAGAAGTGTACAAGCTTACCCAGGGGCAGAAAGCCCTCATCAAGAATGACAAGCCAAACAAGAAGCTGTGGGATGAAGCCATGGAGTCGCTCTCACTTGGACCGAAATTCTTAAACAAAGTTGAAGAAGTTTTCCTCTGCATTTGCTGCCAAGAAGTGGTCTATCAGCCCATCACCACAGAGTGCCAACACAATGTCTGCAGGGAATGCCTTCAGCGGTCCTTCCGGGCAGATGTGTACACCTGCCCGGCCTGCAGGCACGACCTGGGCAAAAACTACTCCATGACCGTCAACCAATCCCTGCAGGATATTCTAAATCAGTTTTTCCCAGGGTACAGCAGTGGGCGATGATCATTGGTTCTGCCTACTCAGCCCTGAAGGAAACGCAATGTAAACTGTAAGGGGAATTTTCAGTAGAGGCAATAAAGAATCAATTTCtcttaatata

Function

symbol description
uhrf1 Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UHRF1

GO:

id name namespace
GO:0042393 histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812009.1 True 2587 mRNA 0.51 17 16301923 16317498

Neighbor

gene id symbol gene type direction distance location
ccdc124 ccdc124 coding upstream 13022 16285698 ~ 16288901 (+)
cluap1 cluap1 coding upstream 16938 16278045 ~ 16284985 (+)
slc5a5 slc5a5,LOC104958014 coding upstream 26228 16256858 ~ 16275695 (+)
LOC120565304 b3gnt3 coding upstream 76461 16216296 ~ 16225462 (+)
LOC120566178 LOC103355552 coding upstream 88370 16209374 ~ 16213553 (+)
LOC120565628 NA coding downstream 140689 16458187 ~ 16459800 (+)
ptprsa LOC103355422,LOC108234298 coding downstream 609121 16926619 ~ 17177885 (+)
tbxa2r NA coding downstream 889272 17206770 ~ 17217790 (+)
si:zfos-943e10.1 LOC103364910,LOC104945262,LOC104928005 coding downstream 918876 17236374 ~ 17255548 (+)
ddx59 ddx59 coding downstream 1020327 17337825 ~ 17343549 (+)
G95952 NA non-coding upstream 132079 16166202 ~ 16169844 (+)
G95929 NA non-coding upstream 173983 16070354 ~ 16127940 (+)
G95877 NA non-coding upstream 320425 15980690 ~ 15981498 (+)
G95876 NA non-coding upstream 321297 15979752 ~ 15980626 (+)
G95873 NA non-coding upstream 327573 15973181 ~ 15974350 (+)
G96070 NA non-coding downstream 185647 16503145 ~ 16503811 (+)
G96075 NA non-coding downstream 275378 16592876 ~ 16593182 (+)
G96076 NA non-coding downstream 358709 16676207 ~ 16676577 (+)
G96086 NA non-coding downstream 454471 16771969 ~ 16772170 (+)
G96088 NA non-coding downstream 560378 16877876 ~ 16878081 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 923 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 669111 15523929 ~ 15632812 (+)
dennd1b NA other upstream 1378078 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 1597570 14689382 ~ 14704353 (+)
G95460 NA other upstream 1680510 14619358 ~ 14621413 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 2996 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 1538133 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 2329205 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 2465102 18782600 ~ 18785636 (+)
G96513 NA other downstream 3213269 19530767 ~ 19531677 (+)

Expression


Co-expression Network