acbd6 (acbd6,LOC106907417,LOC103138489)


Basic Information

Item Value
gene id acbd6
gene name acbd6,LOC106907417,LOC103138489
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22229405 ~ 22259111 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812024.1
TACTTTTAGTTGACAGTGCCTGAGACGGACCAACGGTAGAAACAAATCCGACTGTCACCGATTCTTAACGATAACGGATTAAAAAACGAAATCGGCGCTGAAATACTCATCAAATATATTTAAGGTAGCTACTCTCTGTTCGTCTTTAACGTTTTTAATACGGATCTACGGCGCACGTCGTCTCTGACGGTACGCTACCGTtataaacaataataacaatggCTTCTGGGTCGCCGTCTTCCTCTCCGGACACTGCGACGGGCTCAGGTACAGACCCAGCCCGGCCCGACACAGGGGAGCCTCTCGGTGGAGCAGGCTCGGACTCGGACTCGGACATGGGTTTGGGTAAATTTGACTGCAGCGCCATTGACACGGGGGACCGGCTGGATGGAGAAGGGCTGGAGCAGGAGTTTGAGTCTGCAGCCGACCGCGTACGAGATCTGGTTCAGACGGCCAGCAGGGACCAGCTGCTGTACCTGTATGCACGATACAAACAGgcCAAAGTGGGAAAGTGCAATACACAAAAGCCTGGCTTCTTTGACTTTGAAGGACAGAGAAAATGGCAAGCCTGGAAGCAGCTTGGAGACATGGAGGCAGATCAGGCAATGCAGGAGTACATATCTTGTGTCAATGTGTTAGACCCTGAAGGCTGCACAAAGGAAAGACGACAAGCAGAAAGAAGAACGGGCTTCGGAGGAGCAACAGTCAGCTCGCTATACCAGGAGGAGATGATCAGGGAAGAGGATAAGAACATCTTTGACTACTGCAGAGAAAATAACATCGACCACATCAGCAAGGCCATCATCTCGCAGAAAGTGGATGTCAATGCTAAAGACGAAGAGGGCCGGGCTCTCCTGCACTGGTCCTGTGACAGAGGACACAAGGAGCTGGTTTCTGTATTACTGCAGCACAAAGCAGACATCAACAGTCAGGATAATGAAGGACAGACAGCGCTACATTATGCATCAGCGTGCGAGTTTGCTGACATCGTGGAGCTCCTGCTGAACGCTGGAGCCGACCCGTCCATCAAAGACATGGAGGGCTCTCTCCCTGAGGAGGTCACTGAATCCAGTGccatctcctctctcctgcGTCACTACACAGCTCCAAAAGGCTAGCTCACCCACCTGCCACCACCCTGGTCCTCGCCCCCGTCCTTGTCTCATCCCTGCTTCACTCATTCAACCATCCTCCTCATCATCCCTCCTTCATCCCTGAAGAGACTCTGTTCTTCCCCAGCAGTTAGTAGACCAGGATTACAACagttttatttgatttgattttcaaATACTTGAGGTGAGTTTGGTTATATTGGCTTAGCTCTGTGGAACTACAGGGTTTACACATTAGCCCTTCCATGTGATGAGTGTCAAGTGAAACAAACCACATGTAATTTCAATCATCCAAATAATGTATATTGACTTTATATGCCCAGTAGGGTTGGGTGATATGACTTATACTGCGAGTACTGCTGGAGATTTTGCTATACTGAGGTAGTTACACCTTAAATATCTTTTGCTGTATTCGACCAATGCAGACAATGTTGCAAATCAATGAGCAGGACTGCTTATTGACAATATTGGAATAACAGGGTTTGTGCATCAATGTGGTGAAGTATCTGTATTTGTCAGGTATTTAAGTCACTGGACGAACCAAAAAAAGACATTCCCATCCACTTATTTGATCTATAAACAGTAAAATATTTCAGAAAGTTCATACCGCAATATGATATTAAATACTGTAATAAAAGATTTGATACATATCACCCACTCCTACTGCCCAGGTCTGACTATCAGCCAGGCCTTTTAGTCTGAGTCAGCCCTCTCTGACCATTTGTTCATGATTCAGTTGTTACGTTCAAGGAATGCTTTGATCGTTTGTCATTTATCACATTAAAGTCTTCAACAAATA
>XM_039812025.1
GTACTTTTAGTTGACAGTGCCTGAGACGGACCAACGGTAGAAACAAATCCGACTGTCACCGATTCTTAACGATAACGGATTAAAAAACGAAATCGGCGCTGAAATACTCATCAAATATATTTAAGGTAGCTACTCTCTGTTCGTCTTTAACGTTTTTAATACGGATCTACGGCGCACGTCGTCTCTGACGGTACGCTACCGTtataaacaataataacaatggCTTCTGGGTCGCCGTCTTCCTCTCCGGACACTGCGACGGGCTCAGGTACAGACCCAGCCCGGCCCGACACAGGGGAGCCTCTCGGTGGAGCAGGCTCGGACTCGGACTCGGACATGGGTTTGGGTAAATTTGACTGCAGCGCCATTGACACGGGGGACCGGCTGGATGGAGAAGGGCTGGAGCAGGAGTTTGAGTCTGCAGCCGACCGCGTACGAGATCTGGTTCAGACGGCCAGCAGGGACCAGCTGCTGTACCTGTATGCACGATACAAACAGgcCAAAGTGGGAAAGTGCAATACACAAAAGCCTGGCTTCTTTGACTTTGAAGGACAGAGAAAATGGCAAGCCTGGAAGCAGCTTGGAGACATGGAGGCAGATCAGGCAATGCAGGAGTACATATCTTGTGTCAATGTGTTAGACCCTGAAGGCTGCACAAAGGAAAGACGACAAGCAGAAAGAAGAACGGGCTTCGGAGGAGCAACAGTCAGCTCGCTATACCAGGAGGAGATGATCAGGGAAGAGGATAAGAACATCTTTGACTACTGCAGAGAAAATAACATCGACCACATCAGCAAGGCCATCATCTCGCAGAAAGTGGATGTCAATGCTAAAGACGAAGAGGATAATGAAGGACAGACAGCGCTACATTATGCATCAGCGTGCGAGTTTGCTGACATCGTGGAGCTCCTGCTGAACGCTGGAGCCGACCCGTCCATCAAAGACATGGAGGGCTCTCTCCCTGAGGAGGTCACTGAATCCAGTGccatctcctctctcctgcGTCACTACACAGCTCCAAAAGGCTAGCTCACCCACCTGCCACCACCCTGGTCCTCGCCCCCGTCCTTGTCTCATCCCTGCTTCACTCATTCAACCATCCTCCTCATCATCCCTCCTTCATCCCTGAAGAGACTCTGTTCTTCCCCAGCAGTTAGTAGACCAGGATTACAACagttttatttgatttgattttcaaATACTTGAGGTGAGTTTGGTTATATTGGCTTAGCTCTGTGGAACTACAGGGTTTACACATTAGCCCTTCCATGTGATGAGTGTCAAGTGAAACAAACCACATGTAATTTCAATCATCCAAATAATGTATATTGACTTTATATGCCCAGTAGGGTTGGGTGATATGACTTATACTGCGAGTACTGCTGGAGATTTTGCTATACTGAGGTAGTTACACCTTAAATATCTTTTGCTGTATTCGACCAATGCAGACAATGTTGCAAATCAATGAGCAGGACTGCTTATTGACAATATTGGAATAACAGGGTTTGTGCATCAATGTGGTGAAGTATCTGTATTTGTCAGGTATTTAAGTCACTGGACGAACCAAAAAAAGACATTCCCATCCACTTATTTGATCTATAAACAGTAAAATATTTCAGAAAGTTCATACCGCAATATGATATTAAATACTGTAATAAAAGATTTGATACATATCACCCACTCCTACTGCCCAGGTCTGACTATCAGCCAGGCCTTTTAGTCTGAGTCAGCCCTCTCTGACCATTTGTTCATGATTCAGTTGTTACGTTCAAGGAATGCTTTGATCGTTTGTCATTTATCACATTAAAGTCTTCAACAAATA

Function

symbol description
acbd6 Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. Predicted to be located in cytoplasm. Orthologous to human ACBD6 (acyl-CoA binding domain containing 6).

NR:

description
PREDICTED: acyl-CoA-binding domain-containing protein 6

GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812024.1 True 1911 mRNA 0.47 8 22229406 22259111
XM_039812025.1 False 1822 mRNA 0.46 7 22229405 22259111

Neighbor

gene id symbol gene type direction distance location
sin3b sin3b,LOC102797688 coding upstream 75072 22134681 ~ 22154333 (+)
haus5 haus5,LOC102794657 coding upstream 95068 22124524 ~ 22134337 (+)
LOC120565906 LOC104924615 coding upstream 105313 22118994 ~ 22124092 (+)
rx1 LOC101073544,LOC104924617,LOC100705124,LOC102200154,LOC101467495,LOC102301254 coding upstream 116482 22103969 ~ 22112923 (+)
matk matk,LOC102798474 coding upstream 138555 22079192 ~ 22090850 (+)
LOC120564914 cacna1e,LOC103367400,LOC102302220,LOC102196101,LOC101487658 coding downstream 101420 22360531 ~ 22453997 (+)
si:dkey-21p1.3 NA coding downstream 199350 22458461 ~ 22485160 (+)
abl2 abl2 coding downstream 242437 22501548 ~ 22529009 (+)
osbpl9 osbpl9 coding downstream 270976 22530087 ~ 22570300 (+)
tor3a tor3a coding downstream 318086 22577197 ~ 22582655 (+)
G97297 NA non-coding upstream 55012 22158057 ~ 22174393 (+)
G97295 NA non-coding upstream 71447 22156111 ~ 22157958 (+)
G97263 NA non-coding upstream 136031 22091389 ~ 22093374 (+)
G97190 NA non-coding upstream 193731 22033797 ~ 22035674 (+)
LOC120565815 NA non-coding upstream 222052 22005775 ~ 22007353 (+)
G97335 NA non-coding downstream 54537 22313648 ~ 22316358 (+)
G97338 NA non-coding downstream 63381 22322492 ~ 22322855 (+)
G97410 NA non-coding downstream 335385 22594496 ~ 22595277 (+)
LOC120565733 NA non-coding downstream 521496 22780607 ~ 22800145 (+)
G97485 elavl4,LOC107657884 non-coding downstream 606716 22865827 ~ 22870448 (+)
G97093 NA other upstream 447405 21690897 ~ 21782000 (+)
lsm7 lsm7,LOC102793261 other upstream 671674 21554894 ~ 21557731 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other upstream 787847 21411336 ~ 21441558 (+)
prkacba prkacb other upstream 1664581 20548999 ~ 20564824 (+)
G96513 NA other upstream 2697728 19530767 ~ 19531677 (+)
G97321 NA other downstream 24535 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 226400 22485511 ~ 22491235 (+)
soat1 soat1,LOC102796196 other downstream 233846 22492957 ~ 22501015 (+)
LOC120566218 NA other downstream 312643 22571754 ~ 22576548 (+)
LOC120566227 NA other downstream 313358 22572469 ~ 22572551 (+)

Expression


Co-expression Network