tmem161a (tmem161a)


Basic Information

Item Value
gene id tmem161a
gene name tmem161a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27577974 ~ 27584940 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812035.1
CTGAAGGCAGCGCGACACCACTACCACATCCGGGACATTCAGCAGTTTCACATGTCAGTTGGTTCAGCTGTCAAGACTTTCATGCATGTGAAGAAGCTCCGGCATCTATTCTGGTTTTGACCACGTCTTTCTTTCGACAAAAGAGATGGCGCTGATGGGAATTCAGCTGGTGGTCAGCTTGCTGGCTGCCAGCATTATGCAGAGGATGGCTCCACACTGCTCATTTGCACGCTGGCTAATCTGCAATGGCAGtttgTTCCGGTTCAAACACCCGTCAGAAGGAGAGCTGTGTGCATTGGCTGGAAAGCAGATGCCTAAACAGACCAGGAGAGACAGGAGACAGAATGGGGAGAGCAAGCCTCTCACTGTGCCTAAAGACATCGACCTTCACCTGGAGAAAACTCCAGTCAACGCCATTGACGCTCTTGTGCTGCGTTTTTTCCTGGAGTACCAGTGGCTGATAGATTTTGCAGTCTATGCAACAGGTGTCTTCCTGTTCACGGAGTGTTACTACAGTGTTGTGGATGCCAGCAAAGAGGTCAATATCGGAGCCATCTGGTGTGTCTTGACTGTTCTCTTCAGTCTAAAGACCCTTCACACTCTGATGAGCCACTACTTCCGCTCTGAAGAGGGCGGCGAGCGCTCGGTGTGCCTTGCCTTTGGCTTCCTGTCTCTGCTCGTGGCCATGCTGGTGCTGGTGGTCAGAGAGGACTACCTGGAGTTCGGCCTGGAGTCGGGCTTTTCCAACCTCTTTGACAACTTGGAAGTCTTTGCCAAACAGCAGGGCTACGCTGACTGGTCAATCCCAGTGACCAAGCTGACAGTGAAGCTCGTTCTGGCTGCTATCTGTTCTTACATTGGGGCTCTCCTGGCCTTCCCCGGCCTGCGAATGGCTCAGACTCATCTAGACGCTGTACAGATGAACTCCGACCGACCACTCATCCAGATTCTGCTGCATATGAGTTTCCTGTCTCCAGTCATTGTGCTGGTTCTGTGGGTGAAACCCATTGCACGGGACTTCCTGGCCAATGCACCTATGGGGAAGAACTCTGTCACATTAGTTTCCAGTGAAACATTTGACAGCATGCGCCTGTGGATCATCGTGGCGTTGTGTGTGCTGCGGCTAGCGCTGACTCGTTACCACCTGCAGGCCTACCTCAATCTGGCTCAGAAGTGGGTAGAGCAGATGAAGAAGGAGGCGGGGCGTATCGCTGCTATTGACATTCAGAGGAAGGTCACACGTATCTTTTGCTACCTGACTGTAATTACTCTCCAGTATCTGGTTCCAGTTTTTCTCATCCTGTTCTCCACGCTGGCACTCAAGGCACTAGGGGACTTTTCCTGGGTGGCCGGTGCGGAGCAGACCCCCGCGGTAACCCCAGCACTGGTGATGCCCACAGCAGCGCCCGTGCTGCCCGGGGGTCTCGACGAAGATGACGAGGGGATGGAGGATATGGAGGAGGACATCCAGGCCACAGTGGCACACCTAACCGAGGCCTTCGCAGCGCTGCGGTCCGTCCTCACTCCACTTTTCTTCCGGGGTTTCTTCGCCTTCCTGACGTGGTGGGTGGCTGCCTGCCAGGTCATCAGCTCTCTGTTTGGAATCTACTTCCACCAGTACCTGATGCAGAACTAACTGAGGGAGACGGGAGTGCCACACGGTTCTACTATCCTTCGCAACAGCATAACAACAGATAAAGGGgacatttcattaaaaacacGCAAATGCAGACCGAATGCACTCGTTTGTGGCCAAAACAGAAGTTTTGGTCAAGGTTTGTTGCGAGGAGACAGGTGATGGACACGGTCTGTTGCAATATTGGTTTGTTGCCCTTAGGGCTTTTTGTGGCCAGGAGGCTACTGGTATcaacaacacaaatacagagaGAACTACTGGGGTCTGTTTTACAAAGCAAGTTCAACTTAGTCTGGCTCTCTTTgggttacccggcttcaccgaGTCTTTACATTGGCGGCCTTTGACAACCAGTGCCGCAAAGCTGGTTTTCACCTGGCTCAGTGAACTCTTGAGTTAACTCTGGGTTAACTGATCCAGCTACGGCTGCGTTCGCGTGAAAGAGGCACAGCTTTTGATTGCATGCAACATCAAAAGAACCGTGAGAGGATTACGTAATATGACACAGAACAACTCGCAGGGAAATTAGGTTATTGTGCTAGTCAAAGGTGATATTCAGCGTACAAGTAGAATaggatttaagaaaaaaaaaagctttagaaATAAGAGGACCTATTTCTAAGTATGGCTATATATAAGTGTAATGCTGTGTTCCCACTGCTGTTTTGCACCCGACAAAGCATGAATTCAGACTTTTTACAAATTTCTATCCGTTGATTGCAATTAACAGGAGCAGGTCAGCTGTGCAGCATATAGATTACCATGGTGGTCTACCTTGGCTGAACGTGAGCCAGCTTTGTGATACCGGAGAACGACTTAAGCCCAAAGATATCCAGCTAACCCACTTATCTCGCTTCATGATACAGGCCCCCTGGTCATCGTCCAGCTGTTTCAGTGGAACATTTTCCTGCAACTTTTCAGATGTTTCTATGCCAATGTTACCTGAACTGTTCCTAATAGAACATTTATTAAATGGTACCAAGGTAGGTTTTAGGCATTACTGCCTGTGTAGAtaagactttttatttttgtgaggGACTCTTTGTCCCCCTTAAAGAACCGATTCAAGAGTGCTAAATGGTTTGTGTTATCTTTTTCTGCTGAAAGCTTTTGATTGAAAACGTGTAGTAAAGCTTCTGATCCATCCTATTACATTAAACGCCGCTGAACGTGAATCCTAACTGTGTTTGTGGCTGCGTATCGGCCAAGAACCGGAGAGATTTAGCTTTTATCTAAGGAGTTTCCTTCAGTATTCCTAAGTGCCTGGGAGCTCAGGGATTTTGAGtccattttaaaatgtcctttCTCCCTAATCATGCCGTATTTAGAATGCCGTATGTTAtagcttttattttcaaacactACTCACTGGCAGCATTTTTAGTTGCAGTCTCTTAATTAGCTCACATCAGTTTTATTTCGCTGTTTTTATTGCCAATTAGTCATGTACATGTCAGATTTAGCAAAGCCTACTTTTGTGTCagtggattttatttatttatttatgatacatcGACTCAAATAAcgtttgttgttttaaaaatgatAGAGATGATGTAATTCTGTTTGTGGCCATTTCTGattttaagtgtgttttttttttttagatagttGAATTGAATGCTCTGAAATCCTTGTACTGTGAACTTTATATGGAAAGTGTTACTTTTCTTCTGAATGCATGGTGTGCAAACTTTTGGCTGtaatctgacatttttgtttgtggggctcaataaaacatttaatattttca

Function

symbol description
tmem161a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in adaxial cell; myotome; polster; and somite. Orthologous to human TMEM161A (transmembrane protein 161A).

NR:

description
PREDICTED: transmembrane protein 161A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812035.1 True 3389 mRNA 0.47 11 27577974 27584940

Neighbor

gene id symbol gene type direction distance location
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding upstream 57633 27513155 ~ 27520341 (+)
midn midn,LOC101067279 coding upstream 430818 27120698 ~ 27147156 (+)
atp5f1d atp5d coding upstream 477718 27090223 ~ 27100256 (+)
polrmt polrmt,LOC101481838 coding upstream 642091 26878308 ~ 26935883 (+)
celf5a celf5,LOC102777648 coding upstream 853573 26522344 ~ 26724401 (+)
tmem221 tmem221 coding downstream 21020 27605960 ~ 27611082 (+)
rfxank rfxank coding downstream 27912 27612852 ~ 27615467 (+)
si:ch73-63e15.2 sbno2 coding downstream 309776 27894716 ~ 27971455 (+)
tjp3 tjp3 coding downstream 387853 27972793 ~ 27997414 (+)
arhgap45b arhgap45 coding downstream 415151 28000091 ~ 28017688 (+)
G98685 NA non-coding upstream 79087 27498223 ~ 27498887 (+)
G98663 yjefn3,LOC104950619 non-coding upstream 173137 27401644 ~ 27404837 (+)
G98654 NA non-coding upstream 182691 27394321 ~ 27395283 (+)
G98653 NA non-coding upstream 185008 27392273 ~ 27392966 (+)
G98652 NA non-coding upstream 197837 27379665 ~ 27380137 (+)
G98723 NA non-coding downstream 1485 27586425 ~ 27587108 (+)
G98763 NA non-coding downstream 263793 27848733 ~ 27848938 (+)
G98766 hapln4 non-coding downstream 270736 27855676 ~ 27859123 (+)
G98770 LOC104966597,LOC101073477 non-coding downstream 294377 27879317 ~ 27882311 (+)
G98972 NA non-coding downstream 727654 28312594 ~ 28318888 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 200920 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 781687 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 1235681 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 1282592 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 1538108 26034751 ~ 26039866 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 74756 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 443024 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 552329 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1187422 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 1190435 28775375 ~ 28865487 (+)

Expression


Co-expression Network