ddx10 (ddx10)


Basic Information

Item Value
gene id ddx10
gene name ddx10
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 35673360 ~ 35678429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812039.1
ACGAAGagctgtcttttcttttccacGCTTGCAGTCTGCGTGTATTTTTTAAAAACCTCCTTCCCTGCTCTGTTTTACCTTAAACCATGGAGAAAAAAGGCACAAACCCTGTCGGGAAGAAACGTAAACCCGTGAAGATGAAAGACGGCACCGACCCCGTCAAAAACTTCgagaaatggaagaaaaaataCAACAAGACGAAAGCCCAAGTGAAGAGAGAGCGACCGCAGAAGAAGCCCGAGTGGCAGGTCGAACGGGAGTACATCGACAGGCTCGTCAGCAGGTACGGTGACATCAACTCTAGCGAGGCCGTCAAGTTCTCAGACTTCCCAATTTCAAAGAAAACCTTGTTAGGTTTGCAGGGGGCTCAGTACAGACAGCCCACGGAGATCCAGAGACAGACTATCGGCTTCGCTTTGCTCGGGAAAGATGTCCTCGGCGCGGCTAAGACTGGCTCCGGGAAGACGTTAGCCTTCCTCATCCCGGTGCTGGAGTGCCTGTATCGCCAGCAGTGGACCTCCATGGACGGCCTCGGCGCTCTCATCATATCCCCCACCAGAGAGCTCGCCTACCAGACCTTCGAGGTCCTCCGCAAGGTGGGCAAGAACCACGAGTTCTCCGCGGGGCTCATCATCGGCGGGAAGGACCTTAAGAGCGAGTCGGAGAAGATCCACCGCACCAACATCGTCATCTGCACGCCGGGCCGGCTGCTCCAGCACATGGACGAGACGGCCGCCTTCCACGCCTCCGACCTCCACATGCTGGTCCTGGACGAGGCGGACCGCATCCTGGACATGGGCTTCGCCGACACGCTCAACGCCATTGTGGAGAACCTGCCCAAGTCCCGGCAGACGCTGCTGTTCTCCGCCACGCAGACCAAGTCGGTCAAAGACCTGGCCCGGCTCAGCCTCAAAGACCCGGAGTACGTGTGGGTTCACGAGAAGGCCAAGTTCAGCACGCCGGCCACCCTGGAGCAGAGCTACGTGGTGTGTGAGCTCCACCAGAAGGTCAACATGCTGTACTCGTTCATCAGGAGCCACCTGAAGAAGAAGATCATCGTCTTCTTTGCTTGCTGCAAGGAGGTGCAGTACCTGTTCCGGGTCTTGTGCCGCCTCAGACCGGGCATGCCCATCCTGGCTCTGCATGGCAAGCAGCAGCAGATGAAGAGAGTGGAGGTCTACAATGACTTCCTCAGAAAGCAGAACGCTGTGCTCTTTGCCACCGACATAGCCGCCAGAGGCCTGGACTTCCCCGCCGTCAACTGGGTGCTGCAGTTTGACTGTCCGGAGGACGCGGACACCTACATCCACAGGGTGGGCCGGACAGCCCGGTACAAGGAGGGGGGAGAGGCcttactgctgctgcttcccTCGGAGGAGAAGGGCATGGTCGGCCAGCTGCAAGAGAAGAAAGTTCCAATCACGAAGATCCAGGTGAACCCAGACAAACTGCAGAGCGTTCAGCAGAAGCTGCAGGCCTTCCTGGCCCAGGAGAAGGAGCAGAAGGAGAGAGCCCAGCGGTGTTTTGTCTCCTACCTGCGCTCCATCTACCTGATGAAGAACAAAGAGGTGTTTGACGTCTTCAAACTCCAGATTCAGGAGTACGCGGCCTCTCTGGGCCTCGCCGTGGCGCCGAGGGTGCGCTTCCTCAGCAAAGCCCAGGCACAGAGGGCTGAGAAGGAtggccagagagaggaggaggaggaggagcagcagcagcagtctgaagaagaggaagagctGAGGAGCTTTAAGGCTCGGCTGAAAGGAAACGTTCCCCCCGAGGAAAGTCCGAGCTCAGAGTCGGAAGATTCGGGCGGCGATGAGGAAAGCGGCGACGAAGCGGAGGTGGATCAGGCCAAGAGCCGTCTCCTGGGTGCAGATGAGGACAACGAGGATGAGGACGATCTGAGAGACTTGGACCTGCTGACGGTAAAAAGAAAGGACGTCTTCAGTCTGACGGCGGGCCAGGAGAGTGACGAAGAACCCGCCGAGGACTCCAGAAAGAAATCGGAGAAGGAGACAAAGTTCACGGAAGCCAAAAAGGCCCTCAAGAGGAACTTCCAAGTCAACACCAAAGTGGCTTTCAGCGAAGAAGGTGAGGCCGTGCAGCTGTGGCCTCCGGTCCAGCGGGCGGCGGCGCacggggaggaggaagaggaggagggggtttCGGGCATCAACATGGAGAAGGCCCGGGAGAGGCTGCAGCGCGAGGACCAGGAGTTTGACAAGCACGAGTACAGCCGCAAGGTGAAAGCCAAGCACCGGGAGAAGAGGCTGAAGGCGAAGGCGGCCAGGAGGGAGGCCAGCAAGCAACACGGCCGCAAGTCCGACtcggaggaggaagaggacgaggTGGTGGCGTACCTGGCCAATCGCAGCGAAGACGAGTTCGACCCCAGCACCCTGCCGGACCCTGACAAAGTGCActctgaggaagaggaggaggagtatgAGGCGGCGATAACGGCAGCCAAACGGCAGCACAGCAGCGACAGCAGCGACGAGGATGAGAAGCAGCTCCCGGCGGGGAAGAGGAAGAAAGTGAGGCAACAGAACGATGCGCCCGCAGCCCTGGACACCGGTCTCTCCCTGGCCGAAGACGAGGAGTTGGTCTTACATCTGCTAGGAGGGCGCAGTTAGAGAAAACGGAGAGGAGTGTGAGGATTTGGGGAGGATTTACAAACCGTATTAAGTTTGAAGTTAAATCAAGTTCTAACCACCAAGTCAGTAGTTCAGTGAGAGAAGAAGAAGTGCAGATGGTTGAGTCTGAATTGTGTTGGGAAaagtcttcccgtcaaccttgaaaaaaacattcttttttgacgctttttcttcagtttgtttgttttgaattgtaaaatttttcttctacacattttcagtgctTATTTGTgcatcccatattttctgatataaaacggggtcaatgtgacctgaagtcaacacaagggttaaaggggTTTCAGTGTTGCACATCCATAACACTGGAGGACtcctcattttctttctttttaaatttttttgccttttattggataggaaagctaggagagagaggggggggggggagacatgcaggaaaaccgtcCCAGGTTGGACTCGAaacctggaccttctgcgtcaagGAACTAAGCCctgcatatgtgcgcccgctctaccaactgagctaagtGGCCACACATTgggaggactcataaataagaGATTTAAATAACAATGGTTGGTTGAAAGTGAAGCATCGGCGgctgagatatcctgacttttagacCGCATGGGTCAAGAtcctacaactcccataatgcAACCCACACCAtcttttcattaaaaaacaaaaacctgaacATGTGACTTCAAATCTCGTGTCGGTAACCTTGAATATGCCTGACTAAATAAGCAACTATCAAAGTTGTATACACTTCAACATCTTTAAGTGTTCTTGGGAGTTTTCACTTCCAAGAAAATCTGCTTCATCAGGACCGCGGCTGGCTGTTTAATCCGATTTTTAAAACGACGAGAACCGAAAACAACCCACCGACTGTTGCCAAAGTCTGATTCAACTTCTGTCCAATTTGTTTAAATTCCACCCATTTTCACCCAGTTTGGAACGCAGGCTCTCTGTTATATGTTCTATATATAAACCTTTGTAAACCCGAGCTGAAATAACCCTGATGGCGTCATCATCAAATGACATCACCAGGGTTATTTTCTcatacttgatttttttttttttttttccaagcgTGTTGTTGAAACTGTTAAACCACTGCTGCAGCTGTAAGTTTGACCTAAGGACCCATGTTTTGTATTTACTGTGTGATTTCACATAACCCTCCACCTAATTCATTCTTAACCCAATCTGACCCAGCAGCAGCTGGTGAGGGTGCCCTGTGGCCTTTTCTTGTAAATAAACAGATAAGTTAAATATG

Function

symbol description
ddx10 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human DDX10 (DEAD-box helicase 10).

NR:

description
probable ATP-dependent RNA helicase DDX10

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812039.1 True 3931 mRNA 0.53 2 35673360 35678429

Neighbor

gene id symbol gene type direction distance location
hyi hyi coding upstream 195807 35468011 ~ 35477553 (+)
arhgap39 arhgap39 coding upstream 1011691 34528568 ~ 34661669 (+)
LOC120565866 LOC105938272,LOC105937414,LOC105938273 coding upstream 1216404 34454381 ~ 34456956 (+)
LOC120565861 LOC103354068,LOC104966713 coding upstream 1289333 34380747 ~ 34384027 (+)
LOC120565538 cherp coding upstream 1579785 34066115 ~ 34093575 (+)
LOC120566096 NA coding downstream 21396 35699825 ~ 35737010 (+)
LOC120565108 NA coding downstream 559423 36237852 ~ 36284806 (+)
LOC120565109 NA coding downstream 583510 36261939 ~ 36267815 (+)
LOC120565107 NA coding downstream 620113 36298542 ~ 36327378 (+)
ttr ttr coding downstream 664866 36343295 ~ 36349730 (+)
G100337 NA non-coding upstream 193750 35478671 ~ 35479610 (+)
G100279 NA non-coding upstream 795937 34874342 ~ 34877423 (+)
G100259 NA non-coding upstream 820842 34852313 ~ 34852518 (+)
G100257 NA non-coding upstream 823868 34849203 ~ 34849492 (+)
G100215 NA non-coding upstream 879470 34737507 ~ 34793890 (+)
G100383 NA non-coding downstream 3300 35681729 ~ 35684226 (+)
G100453 NA non-coding downstream 129738 35808167 ~ 35808391 (+)
G100462 NA non-coding downstream 183578 35862007 ~ 35862327 (+)
G100492 NA non-coding downstream 465449 36143878 ~ 36144088 (+)
G100519 NA non-coding downstream 611020 36289449 ~ 36289686 (+)
G100174 calr3 other upstream 1165808 34504643 ~ 34507552 (+)
G100087 NA other upstream 1795029 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 1910441 33243213 ~ 33762919 (+)
nlgn1 nlgn1,LOC102797975 other upstream 2794727 32436847 ~ 32878633 (+)
LOC120565823 NA other upstream 3905821 31761992 ~ 31767539 (+)
dsg2.1 NA other downstream 537035 36215464 ~ 36234599 (+)
G100568 lmnb2 other downstream 795109 36473538 ~ 36475195 (+)
smim24 NA other downstream 817055 36495484 ~ 36534582 (+)
sass6 sass6,LOC102776185 other downstream 917612 36596041 ~ 36611746 (+)
G100671 NA other downstream 1017008 36695437 ~ 36698869 (+)

Expression


Co-expression Network