gtpbp6 (gtpbp6,LOC103356937,LOC102777366)


Basic Information

Item Value
gene id gtpbp6
gene name gtpbp6,LOC103356937,LOC102777366
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39959058 ~ 39963536 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812076.1
gaagaagaagaagaagaagaagaaaaaaaacgtaaaCAGTGCACATGGTGGCTCTCTTTAGCATGACTAGCCCAAAGTTACTCTGTGGTTTACTGCAGTCCCGATGACACCAGAAGGAGAACTTCCGGAGGCAACATGACAACACTGAGGAGGATTCATTCATGGCTGCCCCTCCCGCAGCGACTCCGCGCACCCAGCTGTAACGTTAGGACGTTAGGACCCAGCTGTAACGTTAGGACGTTAGGACCCAGCTGTAACGTTAGGACGTTAGGacacagctgtaacgttaggaCGTTAGGacacagctgtaacgttaggaCGTTAGGacacagctgtaacgttaggacagcagcagcaacaagctGCACGCTGCTTCAGACACTCAGCACCGGGCACACACACCGGCCGAGAGCTGCGGCTCCCGCACACTCTAGGGCGTTTGCACTCTCCGCATGCAGGTGGAAGAACACAGATGACTTCAGCAGTGGTCAGCACGAGGaggaagatgatgatgaagatttCATTGGTGACAGCGAGGTGGAGGAGCTGTTCCAGCTGCAGGTTCCTGCAGGCCTCGGAGAGGGTCAGCAGAGAGTGTTCATCGTTCACCCTGATGTCAAGTGGGGAAGCAGGAAACAGCACCTGACAACcgCTGAGCTGATGATGGCTGAGGCCGTGGGGCTTGTGAACACTTTGGACAACTGGAGAGTTGTGGACAAGATCATCCTGTCCACCAAAacaccagagaagaagaagatattTGGCAAAGGCAACTTCCAGTCTCTGACAGAGAAAATCAGGCAAACAGCAGGGATCAGTGCAGTGTTTGTGAATGTGGAGCGTCTGTCTCCTTTGTCTGAGAGGGAGTTTGAGGAGGCCTGGGGGGTTAAAGTCTTTGACAGATACTCAGTGGTGCTCCACATCTTCCGTTGCAACGCCAGGACAAAAGAGGCCAAGTTACAGATCTCTCTGGCAGAGATCCCCTTGTTAAGATCTCGTCTGAAAAATGAAATGGCGAACTTGGATCAGCAGGGTGGAGGGTCGAGATACATCGGAGGTTCAGGTGAGACCCTGATAGAGGTGCAGCAGAGACTGCTGAAGGAGCGGGAGATGAAGATTCGCTCAGCGCTGGAAAAACTGCGGAGAAAGAGGCACCTGCTGCGATCCCAGCGGAAACACAAGGAGTTCCCCATCGTCTCTGTGTTAGGATACACAAACTGTGGAAAAACCACCCTGATCAAAGCACTGACTGGCGACAGTGGACTTCAACCCAGAAACCAGCTGTTTGCTACGCTGGATGTCACCGTCCACGCCGGCCAGTTGCCCAGTCACATGACTGTTCTGTACGTGGACACCATCGGCTTCCTGTCCCAGCTGCCCCACCAGCTCATCGACTCCTTCTCTGCCACGCTGGAAGATATTAAACActctGACCTGTTGGTTCACGTGCGAGACATCAGCCATCCAGAGACGGTGAACCAGAAGGTAAACGTACTGAGAGTACTGAAGAACATGCAAATCCCCGACCGGCTGATGAGCTCCATGATAGAAGTCCACAATAAAATTGACCTCATTGACaaCTACCAGTGTCCAGAGCCCGACACACTGGCCATTTCTGCGTTGGAGCAGCGAGGCCTGGATGAGCTGAGGAAAGCAGTGGAAGCGGAGATTGTAAACTCGACaggaaaacacattttagacCTCACAGTTGACCTCAGCACGCCTCAGTTAAGTTGGCTGTACAAGGAAGCCACCGTTCAGGACGTGCAGGTGAATGCAGATGAAGGCTCGGCAGTCGTCAAGGTGATCATCAGCGCCGCTGCCTACGGACGCTATAACAAAGTGTTCAGGCCCGTAGCAAAGTAGAGAGTCTTTCTTGCATCTTGCATGACAGCAGCTCCGAGGAAATGACTGCTCCATGTGGCCTGCAAACttctttttaaagaaagaaaaagactatgtattgtacagtatatttaaatatttgacaATCATTTTATAAAAGACGCTGTCGACATTC
>XM_039812077.1
acgtaaaCAGTGCACATGGTGGCTCTCTTTAGCATGACTAGCCCAAAGTTACTCTGTGGTTTACTGCAGACGTTAGGACCCAGCTGTAACGTTAGGACGTTAGGacacagctgtaacgttaggaCGTTAGGacacagctgtaacgttaggaCGTTAGGacacagctgtaacgttaggacagcagcagcaacaagctGCACGCTGCTTCAGACACTCAGCACCGGGCACACACACCGGCCGAGAGCTGCGGCTCCCGCACACTCTAGGGCGTTTGCACTCTCCGCATGCAGGTGGAAGAACACAGATGACTTCAGCAGTGGTCAGCACGAGGaggaagatgatgatgaagatttCATTGGTGACAGCGAGGTGGAGGAGCTGTTCCAGCTGCAGGTTCCTGCAGGCCTCGGAGAGGGTCAGCAGAGAGTGTTCATCGTTCACCCTGATGTCAAGTGGGGAAGCAGGAAACAGCACCTGACAACcgCTGAGCTGATGATGGCTGAGGCCGTGGGGCTTGTGAACACTTTGGACAACTGGAGAGTTGTGGACAAGATCATCCTGTCCACCAAAacaccagagaagaagaagatattTGGCAAAGGCAACTTCCAGTCTCTGACAGAGAAAATCAGGCAAACAGCAGGGATCAGTGCAGTGTTTGTGAATGTGGAGCGTCTGTCTCCTTTGTCTGAGAGGGAGTTTGAGGAGGCCTGGGGGGTTAAAGTCTTTGACAGATACTCAGTGGTGCTCCACATCTTCCGTTGCAACGCCAGGACAAAAGAGGCCAAGTTACAGATCTCTCTGGCAGAGATCCCCTTGTTAAGATCTCGTCTGAAAAATGAAATGGCGAACTTGGATCAGCAGGGTGGAGGGTCGAGATACATCGGAGGTTCAGGTGAGACCCTGATAGAGGTGCAGCAGAGACTGCTGAAGGAGCGGGAGATGAAGATTCGCTCAGCGCTGGAAAAACTGCGGAGAAAGAGGCACCTGCTGCGATCCCAGCGGAAACACAAGGAGTTCCCCATCGTCTCTGTGTTAGGATACACAAACTGTGGAAAAACCACCCTGATCAAAGCACTGACTGGCGACAGTGGACTTCAACCCAGAAACCAGCTGTTTGCTACGCTGGATGTCACCGTCCACGCCGGCCAGTTGCCCAGTCACATGACTGTTCTGTACGTGGACACCATCGGCTTCCTGTCCCAGCTGCCCCACCAGCTCATCGACTCCTTCTCTGCCACGCTGGAAGATATTAAACActctGACCTGTTGGTTCACGTGCGAGACATCAGCCATCCAGAGACGGTGAACCAGAAGGTAAACGTACTGAGAGTACTGAAGAACATGCAAATCCCCGACCGGCTGATGAGCTCCATGATAGAAGTCCACAATAAAATTGACCTCATTGACaaCTACCAGTGTCCAGAGCCCGACACACTGGCCATTTCTGCGTTGGAGCAGCGAGGCCTGGATGAGCTGAGGAAAGCAGTGGAAGCGGAGATTGTAAACTCGACaggaaaacacattttagacCTCACAGTTGACCTCAGCACGCCTCAGTTAAGTTGGCTGTACAAGGAAGCCACCGTTCAGGACGTGCAGGTGAATGCAGATGAAGGCTCGGCAGTCGTCAAGGTGATCATCAGCGCCGCTGCCTACGGACGCTATAACAAAGTGTTCAGGCCCGTAGCAAAGTAGAGAGTCTTTCTTGCATCTTGCATGACAGCAGCTCCGAGGAAATGACTGCTCCATGTGGCCTGCAAACttctttttaaagaaagaaaaagactatgtattgtacagtatatttaaatatttgacaATCATTTTATAAAAGACGCTGTCGACATTC

Function

symbol description
gtpbp6 Predicted to enable ribosome binding activity. Predicted to be active in cytoplasm. Orthologous to human GTPBP6 (GTP binding protein 6 (putative)).

NR:

description
putative GTP-binding protein 6

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812076.1 True 2020 mRNA 0.51 10 39959058 39963536
XM_039812077.1 False 1852 mRNA 0.51 11 39959087 39963536

Neighbor

gene id symbol gene type direction distance location
nit2 nit2 coding upstream 4804 39945687 ~ 39954254 (+)
tbc1d23 tbc1d23 coding upstream 19651 39923558 ~ 39939407 (+)
tomm70a tomm70 coding upstream 38268 39911630 ~ 39920790 (+)
wwc3 wwc3 coding upstream 95797 39828956 ~ 39863261 (+)
cldn34a NA coding upstream 135691 39816828 ~ 39823367 (+)
slc9a7 NA coding downstream 42711 40006247 ~ 40036320 (+)
tubgcp5 tubgcp5 coding downstream 88781 40052317 ~ 40069649 (+)
cyfip1 cyfip1 coding downstream 108506 40072042 ~ 40125946 (+)
herc2 LOC103356925 coding downstream 175897 40139433 ~ 40197238 (+)
oca2 oca2 coding downstream 242490 40206026 ~ 40260251 (+)
G101600 NA non-coding upstream 50548 39905036 ~ 39908510 (+)
G101579 NA non-coding upstream 86885 39871656 ~ 39872173 (+)
G101519 LOC103356959,LOC104928288 non-coding upstream 278532 39680078 ~ 39680526 (+)
G101484 NA non-coding upstream 520993 39437654 ~ 39438065 (+)
G101464 NA non-coding upstream 680105 39278652 ~ 39278953 (+)
G101666 NA non-coding downstream 20934 39984470 ~ 40018693 (+)
G101674 rp2 non-coding downstream 37369 40000905 ~ 40003839 (+)
LOC120565265 NA non-coding downstream 80646 40044182 ~ 40045506 (+)
G101687 nipa1,LOC102781059 non-coding downstream 166265 40129801 ~ 40133354 (+)
G101688 NA non-coding downstream 171671 40135207 ~ 40135500 (+)
LOC120565298 cdkl5,LOC103356958 other upstream 218781 39693912 ~ 39740277 (+)
reps2 reps2,LOC102792668 other upstream 366296 39561061 ~ 39592762 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 494608 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 597325 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 1078453 38866435 ~ 38880605 (+)
atp10a atp10a other downstream 551557 40515093 ~ 40559895 (+)
G102165 NA other downstream 1489138 41452674 ~ 41453306 (+)

Expression


Co-expression Network