babam1 (babam1)


Basic Information

Item Value
gene id babam1
gene name babam1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14537576 ~ 14544528 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812080.1
TAGCAGTTCCTGCTTTGGTCATTTCCGGTAAGGGAGTTGTCCATCAAAACAAATGTTAGCTTGTCGTTGAAATATTTTGCAACTTTCAATGAGTTTCACTTTATTTGAATCCTAGAAGTTTTGCAGTTACTTATCACCAACCTGTATCTTAGCAACCAATCCATGGAGACGCCGGAGCCAGGCCCAGCAGATGGAGAGGAGCGTCTGGTGGAGCTGCGACCTCGGACACGCTCCAACCCTGAAGGTGCCGAGGACCGTCGCAGCAGCACGGGCAGCCTCGGAGGAAACAGTAACCCAAACATATCTCAGCCTGCTGTGGGGAGTCGTGTTGAGGGCGAGGGCGAGGCTTCAACCAGCGACAGTGCTCCCAGTTCCACCACCACAACTGTCTCAGCCACTGCAGCTCAGACTGTAGCCCCTgttgcagtagtagtagcagcagcggCTGCAGCCGGTGCCACAGTGCCACTTTCCACTGCTTCTGTTGCAGCCAAAGAGAGGCCAAAGCCCACGCAGCAACAGCCCACATTGACAACCCCCATCCCTCCACCAGCAGAGTACCAGCTCAGAGTTCCCCGTGTTAACTGTCCAGAGAAAGTGATAATCTGCTTAGACCTTTCCGAAGAGATGTCTTTGCCAAAGTTGGAGTCATTTAATGGGTCTAAAACGAATGCCCTGAACATATCCCAGAAAATGATTGAGATGTTTGTCAGAACTAAACACAAGATTGACAAACGGCATGAGTTTGCGCTGGTGGTAGTCAATGATGACTCTCTCTGGTTGTCAGGCTTCACCTCTGACCCCAGGGAGCTGTGCAGCTGTCTGTATGATCTTGAGACCAATGTTTGCGAGTCCTTCAACCTTGAAGATCTTCTTAATGTAATTCGTCAGAAGATCGAACTGCCGTCGATGGACAATGTTCAGACCATCCCTCCTCCATATGTGGTGCGGACTGTGCTCATCTACAGCCGTAATGCAGGACAGCTTCAGTTCAACCCTTCAGAGGCTGTTAGTAAAATGCTGCAATCTCcatattttttctttgatgTTGTCTACCTACACAATGGGGTGGAGGAGCAGGGAGATGATACCAGCTGGAGGGACAACTACACCTCTTTCTGCAACCTGGATTCAAAGGGCATGTGCTATCGCTTTGAGGTTTCCCTGAGTGGACCCGCCATCGAGCTGCACAACTGCATGGCCAAACTTCTGGCTCACCCTTTACAAAGACCTTTCCAGAGCCACGCGTCTTACAGCCTGCTGGAGGGGGAAGACCCCCAGGACATTGAGGCAACGGTGTAAAAAGGGCGCACTTATAAAGCCCTGTTTCTCCGTGAAAttcacacactgtagtttattagAAAGCAGGCAAGGGTTTTCCAAGTACCACTTATTACTGAGCGGTTTTCCATTCACTGCTGTAAAGCAATCATTTTTAAGAATATTTGGGAAAACCATGTGTAGGTAGTTGTAAAGAAATTAGGGTTTTAGCAGGTTACTACTAACTCAATCATTGTGTTTCCATAAAAGAATGAGTGAGTCATTGATTGTTCTAAGCTTTTCTGATGTTGTTAGTTGTAAAACTACTGGAGGTCTCCTGGGGGATGAGGTGATGTCAGAGAATCCAGGAGCAGGACACAAGTAGGAGGAGAAGATCGAGAAAGAATAAGAAAAGGAAGATGTTCAAAGCATTAGGCTTTGTTAAAGTCACTCCCTCCCCATTTGAAATTTCTTTCAAATCTTAGACCACACTGATCTGTCTGTAAGTCTTAAAGGGGGAAATCAGTGCAAGCATGTGACGGTTTTTGATAGCTGGCCTTTTGAGACAAACTGCAATATGATGCACTGTATCACAGAGGTCACTTCTGTATTTTTGCCTTCCCTTTTTGTTGGTAATTTCCGCCTTTTGTTGcctgttttaatgtattttctattttataatgtgttgtttttcatctttTGTTCATTTGTCACTCTTGTATGTAACACAGACAATGAAAGAATGTACAGTAACGTAGAAGCGGCCCCTCCTTTGACAATGATTGGCATTTGTGGATTGATTGTAGAAAAAGGCCCCTCATTATGCCAGTCTAGCTGCACTTGAAACACATTGTACAGAAAAGCTTTTTGAAGCCGTTTCTGGATATTAAAAAAGGCATGCTGAATcataa

Function

symbol description
babam1 Predicted to be involved in several processes, including positive regulation of DNA repair; protein K63-linked deubiquitination; and response to ionizing radiation. Predicted to act upstream of or within DNA repair; cell division; and chromatin organization. Predicted to be located in cytoplasm and nucleus. Predicted to be part of BRCA1-A complex and BRISC complex. Orthologous to human BABAM1 (BRISC and BRCA1 A complex member 1).

NR:

description
BRISC and BRCA1-A complex member 1

GO: NA

KEGG:

id description
K20776 BABAM, NBA1, MERIT40; BRISC and BRCA1-A complex member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812080.1 True 2171 mRNA 0.46 9 14537576 14544528

Neighbor

gene id symbol gene type direction distance location
si:ch73-61d6.3 LOC107392864,LOC108238350,LOC103359431 coding upstream 39002 14480454 ~ 14498574 (+)
mfsd12b mfsd12 coding upstream 58509 14469044 ~ 14479067 (+)
csnk1g2b LOC106925954,LOC106953035,LOC103468226,LOC104921814,LOC103394965 coding upstream 70288 14424219 ~ 14467288 (+)
zgc:101100 NA coding upstream 114474 14418540 ~ 14423102 (+)
rexo1 rexo1 coding upstream 128154 14391912 ~ 14409422 (+)
plvapb NA coding downstream 4061 14548589 ~ 14554920 (+)
ano8b ano8,LOC103359425,LOC104965807 coding downstream 34499 14579027 ~ 14619203 (+)
abhd8b abhd8,LOC103359436 coding downstream 79751 14624279 ~ 14637054 (+)
axdnd1 axdnd1 coding downstream 404640 14949168 ~ 14961237 (+)
tdrd5 NA coding downstream 421738 14966266 ~ 14984677 (+)
G95372 NA non-coding upstream 168350 14368922 ~ 14369226 (+)
LOC120565959 NA non-coding upstream 273690 14258285 ~ 14263886 (+)
G95299 NA non-coding upstream 314982 14220571 ~ 14222594 (+)
G95297 NA non-coding upstream 329014 14206339 ~ 14208562 (+)
G95287 NA non-coding upstream 392258 14145005 ~ 14145318 (+)
G95447 NA non-coding downstream 2008 14546536 ~ 14639046 (+)
LOC120565827 NA non-coding downstream 242540 14787068 ~ 14791606 (+)
G95492 NA non-coding downstream 334554 14879082 ~ 14879287 (+)
G95493 NA non-coding downstream 379424 14923952 ~ 14925603 (+)
G95496 crb1,LOC102787887,LOC102294192,LOC103365562 non-coding downstream 385984 14930512 ~ 14932081 (+)
LOC120564965 LOC102299696 other upstream 1137832 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 1154829 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 1195478 13335734 ~ 13342098 (+)
G95046 NA other upstream 1317204 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 1437131 13005568 ~ 13100445 (+)
G95460 NA other downstream 74830 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 144854 14689382 ~ 14704353 (+)
dennd1b NA other downstream 265840 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 979401 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 1745295 16289823 ~ 16301000 (+)

Expression


Co-expression Network