lonp1 (lonp1)


Basic Information

Item Value
gene id lonp1
gene name lonp1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36725189 ~ 36741996 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812100.1
AGTCAAAGGGTCACGCTGTAGAAAGCTCCAGATCAACATGGCGACCTGCGTGAagatgctctgtgctgctcggCAGCTGCACAGAAACTCGGCTCTGCTCGCGAAAGTGAAGTGTTCCTCCATGGTCCTGAGGACCGGCAGTAGCCGGCCCCTCCCGCCCGACACAGCGGCGGCGCTGAGCCGCCTCCAGACGCCACGCTTCTACACCAGCACCGCGGTGACAGCTGGCTGCCGGCTGACCGCCAGACCTCACCGCTGGATGCGGGTCGGAGCCGCCGCTCTCCGGGGCCGAACCGAGCTCCTTACACCGACCTCTGGACCCTACAGGGTTCAGGACAGGATGTTCGGGAACCGGGCCAGCGGTGCGGGCTTCTCCGGGGAGGACGGCGGAGACAGTGCGGGCTCTGGGGGAGAAGAGTCTGGGGGAGATGGGGGAGCTCCGTACAGTGGACCCCAGATGACGGCTCTCACCCCCATGATGGTTCCGGAGGTGTTCCCCAATGTGCCGCTGATCGCTGTGAGCAGGAACCCGGTGTTCCCCCGCTTCATCAAGATCATAGAGGTGAAGAACAAAGCGCTGATGGAGCTGTTGAGGAGGAAGGTTCGTCTGGCTCAGCCATACGCTGGAGTCTTCCTGAAGAGAGATGATAACAATGAGTCCGATGTGGTGGAGTCTCTGGATGCCGTCTACTCTACAGGGACCTTTGTCCAGATCCATGAGATGCAGGACCTGGGGGACAAGCTGAGGATGATCGTCATGGGACACCGCAGGATCCGGATCACCAGACAGCTGGAGGTGGAGCCTGAAGAGGCAGCGACGTCCCCTGTGTGGTCCGAGTCTGAGTCCGAGTCCCAACACAAACCGCCGCAGAGACGCAAGGCCAAACGCAACCGCAAGGACCAGCCGGGGTCGGTGACGGAGCAGCTGGAGGACAAGGTGTCAGAAGCCGACCTGAGTCCAGAGCTGCAGCCTCTGTCCTCCTCCAACATCCTGATGGTGGAAGTGGACAACATCCAGCATGAACAGTTCACCGTCACAGAGGAGGTCAAGGCGTTGACAGCAGAGATAGTGAAGACCATCCGAGACATCATCGCTCTGAACCCCCTCTACAGaGAGTCAGTCCTCCAGATGATGCAGGCTGGTCAGAGAGTGGTTGATAATCCCATCTACCTCAGCGACATGGGAGCAGCTCTGACAGGAGCAGAGTCGCAGGAGCTACAGGACGTCCTGGAGGAGACCAATatcCCGAAGCGTCTCTACAAGGCTCTGTCTCTGCTGAAGAAGGAGTACGAGCTCAGCAAGCTGCAGCAGCGACTGGGCcgagagGTGGAAGAGAAGATCAAGCAGACCCACAGGAAGTACCTGCTCCAGGAGCAGCTCAAGATCATCaagaagGAGCTGGGTCTGGAAAAAGAGGACAAGGACGCCATCGAGGAGAAGTTTAGAGAGCGTCTGAAAGAGAGGACTGTCCCGCAGCACATCATGGACGTCATCAACGAAGAACTGAACAAACTGGGACTGCTGGACAACCATTCGTCAGAGTTCAACGTGACCCGTAACTACCTGGACTGGCTAACCAGCATGCCCTGGGGCGTCAACAGTGAAGAGAACCTGCTGCTGGACAGAGCCAAAGAGGTTCTGGAAGAAGACCATTATGGGATGGATGACGTTAAGAAGCGCATATtggagTTCATCGCAGTGAGCCAGCTGCGTGGCTCCACCCAGGGGAAGATCCTGTGTTTCTACGGTCCTCCGGGCGTAGGGAAGACCTCCATCGCCCGCTCCATCGCCAGAGCCCTCAACAGAGAGTACTTCAGGTTTAGCGTGGGAGGCATGACCGACGTGGCGGAGATTAAAGGACACAGgagaaCGTATGTTGGGGCGATGCCGGGGAAGATTATCCAGTGCCTGAAGAAAACCAAGACTGAGAACCCTCTGGTGCTGATCGACGAGGTAGATAAGATGGGTCGCGGTTACCAGGGCGATCCATCGTCTGCTCTGCTGGAGCTTCTGGACCCTGAACAGAACGCCAACTTCCTGGACCACTACCTGGACGTTCCGGTGGATCTGTCAAAGGTTTTGTTCATCTGCACGGCCAATGTGATTGACACGATCCCAGAGCCTCTCCGGGACAGGATGGAGATGATTAATGTGTCTGGATATGTGGCCCAGGAGAAACTGGCTATAGCTCAGAATTACCTGGTCCCTCAGCTGCGCTCCCGCTGTGGTCTGACGGAGGAGAAGGCCTCTATCTCCTCTGACGCCCTCAGTCTGCTCATCAGGCAGTACTGCAGGGAGTCTGGAGTCAGGAACCTGCAGAAACAAGTGGAGAAGGTTTTTCGCAAGGTTGCGTTCTGTATCGTCAGCGGTGAACAAACCGCAGTGACTGTTACGCCTGACAACCTGCAGCTCTACGTGGGTAAACCTATTTTCACAGTGGATCGAATGTATGATGTCACCCCTCCAGGAGTGGTTATGGGGCTGGCATGGACTTCTATggGAGGGTCCACGCTGTTTATCGAGACTTCACTGCGGCGTCCTCCTGCAGGAGCAGAGACTAAAGGAGAGGGCTCACTGGAGGTgacagGTCAGCTCGGCGATGTGATGAAGGAAAGTGCAAAGATCGCTTCAACCTTTGCCAAAGCCTTCCTGATGACCCAGGAACCCGATAATCACCTACTGGTCAACTCCCACCTGCACCTGCATGTCCCTGAGGGGGCGACTCCCAAGGACGGACCAAGCGCTGGCTGCACCATTGTCACAGCACTGTTGTCCCTGGCAACCGACCGACCGGTGCGCCAGAACGTAGCCATGACTGGAGAAGTGTCACTGACGGGCAAAATACTGCCAGTTGGAGGAATCAAAGAGAAAACCATTGCTGCCCGTCGTGCTGGTGTGACGTGCATCATCCTGCCCGATGAGAACAGGAAGGACTTCTCTGACCTGCCCGACTACATCACCGAGGGCCTGGAGGTCCACTTTGTGGATCACTACAGACAAATGTACCCCATCGTCTTCCCACAGGACCAGTCTTAACAAGCTTTTAACTACAGAGCTAAAGCCAAGGCGAGGTGGACCAAGACTTGTTTTTATTACACTACTTCAGAACCTATTAAGTTACCACATTCTGTTGTAACATCCACTTTGGACTCCAAGGTCCTGCTGTGGAGATTGGCGCTACATTATCTGTTCCAAAATCCTCCCATGGAACAGCTGGACATAGAACGCAGTTTCAGCCGCTGTAGGAGGACAGACGTGTGCCAATGATGTCATACATAGTGAAGTCAGGTGATGATGAACAATGGCCGCTCGTCACAGGATAAGACGTCATGGATGAGCAGAGGTAGAGGTGGcagctctctttttttaaagggctgTGGACGGACTCTTACAcagatttcttttattattatatattgttattggccagatgtgatgatgatgtcgaaataaattaaataataaacacaacTCTACCTTTA

Function

symbol description
lonp1 Predicted to enable ATP-dependent peptidase activity and single-stranded DNA binding activity. Predicted to be involved in chaperone-mediated protein complex assembly; mitochondrion organization; and protein quality control for misfolded or incompletely synthesized proteins. Predicted to act upstream of or within protein catabolic process and proteolysis. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in CODAS syndrome. Orthologous to human LONP1 (lon peptidase 1, mitochondrial).

NR:

description
lon protease homolog, mitochondrial

GO:

id name namespace
GO:0051131 chaperone-mediated protein complex assembly biological_process
GO:0090296 regulation of mitochondrial DNA replication biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0034599 cellular response to oxidative stress biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0070407 oxidation-dependent protein catabolic process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08675 PRSS15, PIM1; ATP-dependent Lon protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812100.1 True 3483 mRNA 0.55 21 36725189 36741996

Neighbor

gene id symbol gene type direction distance location
rsph4a LOC104961853 coding upstream 4290 36713375 ~ 36720899 (+)
dohh dohh,LOC102789931 coding upstream 12936 36704452 ~ 36712253 (+)
nfic nfic,LOC102792909 coding upstream 130749 36563454 ~ 36594440 (+)
ctns ctns coding upstream 302714 36409868 ~ 36422475 (+)
b4galt6 b4galt6,LOC104925469 coding upstream 351583 36351943 ~ 36373606 (+)
plpp6 plpp6,LOC103354162,LOC102785296 coding downstream 133651 36875647 ~ 36882393 (+)
LOC120566029 LOC104964070,LOC103354160 coding downstream 147422 36889418 ~ 36917143 (+)
LOC120565044 LOC104959247,LOC103354158,LOC101062866 coding downstream 180497 36922493 ~ 36931245 (+)
rangrf rangrf,LOC102787952 coding downstream 243862 36985858 ~ 36986961 (+)
mettl13 mettl13,LOC102788519 coding downstream 251147 36993143 ~ 37005146 (+)
G100668 NA non-coding upstream 46359 36678498 ~ 36678830 (+)
G100667 LOC102192127,LOC101475420,LOC102307792 non-coding upstream 47261 36674449 ~ 36677928 (+)
LOC120565379 NA non-coding upstream 73299 36642906 ~ 36651890 (+)
G100584 NA non-coding upstream 194314 36529802 ~ 36530875 (+)
G100578 rpl36,LOC106560598 non-coding upstream 210383 36511245 ~ 36514806 (+)
G100699 NA non-coding downstream 12584 36754580 ~ 36754825 (+)
G100714 LOC104926011,LOC100703953 non-coding downstream 121984 36863980 ~ 36868994 (+)
G100727 NA non-coding downstream 193171 36935167 ~ 36974049 (+)
G100726 myoc non-coding downstream 226691 36968687 ~ 36978162 (+)
G100738 LOC103354147,LOC103137061,LOC106938442 non-coding downstream 297252 37039248 ~ 37043566 (+)
G100671 NA other upstream 26320 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 113443 36596041 ~ 36611746 (+)
smim24 NA other upstream 190607 36495484 ~ 36534582 (+)
G100568 lmnb2 other upstream 249994 36473538 ~ 36475195 (+)
dsg2.1 NA other upstream 490590 36215464 ~ 36234599 (+)
prrc2c NA other downstream 190659 36932655 ~ 36958360 (+)
G100843 NA other downstream 721918 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 2124439 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 2581588 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 2712124 39454120 ~ 39464450 (+)

Expression


Co-expression Network