LOC120565976 (col24a1)


Basic Information

Item Value
gene id LOC120565976
gene name col24a1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11684362 ~ 11786933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812141.1
ATTTTTTAAAGTCTGGGATCTCTGCTGCCTGGACAAATGCATACAAATGCATTTAGGAGCTCAACGGACAAGGAGTGGACACGTTTCCGCGGCAGCAACGTGGAACTTTATCCTGCTCCTGTCAGTATGCTCAGCAGTACTTTCTGGAGAAGAAGACTACCTAGCTCAAGGAGTGGATATCCTCTATCGACTGGGCCTTACAGCTCAAAGCAGTGCAGACGAGAGGACAAGCTTACCTTCGACTGCACACACCACTGTTCCCTCACCTTTGAATCTCCCTCTTTCTGGATATGGGGTATTATTCAACTCAAACTCCCTCTATGAGGCTCCAGCAGGCAGTCTGTTCCCGCCTGAGATTGGCGAGGAGTTCTCTGTTGTGGTTAGCCTAAGCTCCTGGCGAGCAAacaatgcttttctttttagtGTCAAAGACAGCAGGGACAGGCTGCGTTTTGGCATTCAGCTGCTGCCGCGCAGGGTGGTGGTTTACACTGCCGAGAAAGCCTCCATCTACTTCCCCTACAACTGGCAGGATGGGCGCCAGCACCCTTTTGCTGTTGGTGTTCGTGCACGCTCAGTGTCCTTCTATGCGGATTGTGGGGCGGTGCAGCAGCGGGAGCAGACCCTGGGGAGATCTCAGACACTGGGGGATTCTGGGGGACTCTTCACTCTGGGGAGGATGAACTCCAAAGCGGCACCTTTTAATGGTCGAGTCTGCCAACTAGATATCTATCCCTCCGCCCAAGCTGCCGCGCACTACTGCAACTACCTTAAAACACAGTGCCGGCTGGCCGACACTTACCGATTGCCTTTGCCACACCCCGGTTTGGATATTGAGGCAAATGACCCTCCTTCTAACCCCTTGACAAAGTCCCTTGTTGGAGTAGCAGCTACCCATCATAACCCCTTAAAAGCCACAGCAGCTTTCAATGTGTCCCCAGGCAGTTTGGTCACACAGTATTCAACACTGAGCCCATCAGCACAACCTCATCTGGGGGATCAGAGCCACCTTTCCAAATTGGATCCCCTGGCCCACTCCACCACATCCTCGCTTCAGCCTGACAGCCCCACCTTAGCTACCTTGAGTGGACGAGCAGTTCTGGATCTCGCCCATAGCACAACTATCACCACTACCAAAAATGTGTTGGCAAAAGCCAGTAGCCCCCAGAGGGACACTGATCACTCTGAAAACAGCACAGAGGAAGACAGCAGCTCCGGGATCCTACAGACTCCAAATGCCACCCCAGGCCTGGTTTCCCTAGTCAGGCAAAGTCGAGTGAAGGAAGGACTCAGGAACAATTCCATCGCCAGCTCCAGGGACCCTCACTCCGGGCCTCACCAGACTCGTCAGCCCCTGGAGACTCATCTGAGAGCCAACGGCACCACTTTGTACCGGGAGAATCAGGTGGACACCTCAGAACAGCATGACCTGGATGGCAGCTATGATGACGTAGACATGGGAGGATATGATTATGGATATGAGGATCCAGACTATTTCTATGACTATGATGATGGTTTACGTGGCCCCAAAGGAGAGCGAGGTGCTCCGGGTCCTCCTGGTCCCGCTGGTTTACCTGGTCCTCCAGGAAAAAGAGGTCCTCGGGGTCCCACCGGTCCACATGGAAGCTCAGGACAGCCTGGACCACCTGGGCCCAAGGGTTCAAAGGGAGACCCCGGGCTGTCTCCAGGCCAGGCTCCATCGGGAGAGAAGGGTGACAGAGGTCCACCAGGTCTTCCTGGGCCGGATGGATTTCCAGGTCCACCGGGTCCTAAAGGTTATCTAGGGCCAGCCGGACTGCCAGGAGAACAAGGCATACCAGGACCTCCTGGGGAAGCCGGGGCTGCAGGTTACCCTGGCAGGCAGgGCTCAGCTGGGCCACAAGGTAACCCGGGGCCTAAAGGTGTCCGTGGTTTCATTGGGCCTCCTGGCGTTGCTGGGCCACTGGGGCCAGAGGGGGAGAAAGGCATTCCTGGTCCTGTTGGAAAACCTGGCCCCAAAGGAAGACACGGTGTGGTGGGTGATGCGGGGGAGAGGGGGCCTCCTGGTCCTGATGGCAATGAGGGGCCTGTTGGTGGGATTGGCATTAGCGGCTTTCCTGGTCTGAGGGGGGACCCAGGGCCTGAGGGACTGCGAGGACTGCCTGGTCTGGTGGGACCTCAGGGCCCAGCAGGACGAGCCGGCCTGCCTGGATTGAAAGGTGATAAGGGTGAAGTGGGACAAATGGGCGAACCAGGAGAGATGGGGTACCAAGGTGATAAGGGTGTTGCTGGTGCACCTGGTCCTACTGGGCTAAGAGGGAAACCAGGACCACCGggtaaaatcggtgaGATGGGGGCACAAGGACCACATGGGCCTCCAGGACCAGAGGGATTTCCTGGGGACATTGGAGTACCAGGGCCCAACGGTCTACCTGGACCAAAGGGTTTGCAGGGTGTCAGAGGGCCGCAAGGTCCGCTGGGTCCTCAAGGAACACAGGGTGATGAAGGACCACTTGGACCACCTGGCAGCGCTGGCCCTACTGGGAGACCAGGAAGGAAAGGCTACATAGGCGAACCTGGCCCCGACGGTTTAGAGggagagaaaggggacATGGGAAATGTTGGAAAAATTGGACCACAAGGTCCACTAGGCCTGATTGGGATAGCTGGTGGGATCGGAGTTCCGGGTGAAAAGGGCGACCGAGGACCAGCAGGTCCAACCGGTCCAGTTGGGGAGAAGGGGCCAAGGGGCTATCCAGGGTTGCCAGGAAGTCCAGGGGACATCGGCCTGCAAGGTGCACCTGGTCCACAGGGGCAGAGGGGTAGTGCAGGCATCGCTGGGACAAAGGGCAGGAGGGGGCCCCAAGGTCCAGATGGCCCACTGGGAGAACCAGGCCCTGAGGGCACCAAGGGTGAAAGGGGTGACATTGGACAAAAAGGAGGGCCAGGATTCATAGGCAAGGCTGGCAGTCCAGGAGAGAGAGGCCCTCCTGGGAAGAGTGGTAAACCAGGTATTCCAGGCAGCACCGGGGAGAGGGGACCCCACGGTGAACCAGGACCCAAAGGACCTTCTGGAGAGGCTGGACCTGATGGAGAGCAAGGACCTGaaGGTGGGCCTGGTGCAGAGGGGGAACCGGGTGCCATCGGAGAgccggggtcaaagGGTGATGTTGGGCCTCCAGGAGCTGAAGGGGAGCAGGGACAAGAGGGAATGAGAGGTCCTCCTGGTCCTCCTGGTGAAGACGGTCCTCAAGGAAAAGATGGAGCCAAGGGTGAGCCTGGTGAGCGTGGGCCAATTGGAGAGCCAGGGGACAAAGGAATGGAAGGAGACTCTGGGCTCATAGGACCACCCGGAGAGCCTGGGAAACAGGGCTTTCGTGGGCCAGAAGGAAAACTAGGGGCCCCAGGGAACAGAGGACGACACGGAAAGAAGGGAGAGAGAGGTCCTCCAGGTCTTGTTGGTGAGATCGGCACACGAGGAGACATCGGCCAGCCAGGCGAGCCGGGTCTGAAAGGTGCCAGGGGAACTCGAGGCACACCAGGTCAGCCTGGAGTCATGGGGATAGAAGGGCAACCAGGACTGGCAGGATACACAggtcaCCCTGGCAAGCCTGGGCCCATTGGACCACCAGGGCCTAAAGGTGAAAAGGGTTATCCAGGCGAGGACAATAAGACCCCAGGACTGCCAGGGCCCTTAGGTGAACCAGGGCCCCCAGGAGAACGAGGAGAACGTGGAGAGCCAGGGGATGAAGGATATCAGgGCCATGTTGGTACCACTGGATCTCGTGGAGCTGTTGGACCGCAAGGCCCACCGGGATCACCAGGCCTCCCTGGAGAATCAGGCCCAAAAGGAGAGATAGGCGCTCCGGGCTCGGCCGGAAAGAAAGGAGCAAGAGGGCTGAGTGGAGCTCCTGGCATCGAAGGGTCACTTGGTTTACCTGGACTCGTGGGAATGAACGGTTACCCAGGGCCGGATGGTCCCCCAGGACTGACTGGCTTACCAGGATTTCCCGGAAAAAAAGGACGACAGGGTCAACAAGGCTTGGTGGGACAAGAGGGACCTGCTGGACGTCCAGGTCCCAGGGGAGAGATTGGACTTCCTGGACCACCTGGAGAAAGAGGCCTGCCTGGTCAGAAGGGAGAACTGGGACTTCCAGGGGACAGGGGAGCCTCGGGAATCAAAGGCATGGAGGGGGCTACAGGTGACCAGGGCAGGAAAGGTGACCAAggacccaaaggacaaccaGGGGAATATGGGGATCTGGGAATAGTTGGCTTACAGGGCTTTCCAGGGCCAATGGGGCCGAATGGTGATTTGGGATTGAGAGGCTTCCCTGGCCCGAAAGGCCCATTGGGCACTCTGGGATTCACTGGACCTGTAGGCCCTGAAGGAATGATGGGCCCAATGGGAAAACCTGGACCAAGGGGTCCGAAGGGAAGCGGTGGTGAAATGGGGCCTCAAGGACCACAGGGAAGTCCAGGACCTAGCGGACCCCCAGGTGCTCCAGGTCCAACAAGGCTGATATATGATGACTCAGCAGTCTACGGTCTATCTGACTCTAACGCTGCCCTCAGCACACAGAGTTTACAGAACACCGAAATGAGCCTCTCCGATCAAAATACGGAGATACTAAAGACTCTACATTACCTGAGCAGTGTGATTGAGAGCATAAAAAAGCCTCTGGGCACAAGGGAGAACCCAGCCCGTGTCTGCAAAGATCTGCTTGACTGTCATCACAAGCTCAGAGATGGTTGGTTCTGGATTGATCCAAACTTGGGCTGTACTTCTGATGCCTTCAAGGTCTTCTGCAATTTTACCGCAGGAGGGCAGACCTGTTTACATCCAGTAGCCTCTAATAAGATGGCGTTTGGTGTGGGGAAAGTCCAAATGAAGTTTCTCCATTTGCTGAGTACTGAGGCCAGTCACAGCATCATACTCCACTGCCTAAATGATCCTCCCTATGGCACCACAGACAGCTTCAGCTCCACCGGATCCTTACCGCAAGAGAACACCACACTTAAGTTTCGTGGCTGGAACAAACAGATGTTTGAGAAAGACACACTACTTGAACCACATGTGCTCCAAGACGAGTGCAAGATCCAAGATGGCAGCTGGCACCAGTCACGCTTCTTCTTCCATACTCAGGACAGTCGTCAGCTACCTATTGTAGACATACAGGAGTTTCTCACATCACAGCCCAATAGTCAGCGCCGTATAGAAGTCAGTCCAGTCTGCTTTCTCTGA

Function

symbol description
col24a1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway and extracellular matrix organization. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
PREDICTED: collagen alpha-1(XXIV) chain

GO: NA

KEGG:

id description
K19721 COL5AS; collagen type V/XI/XXIV/XXVII, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812141.1 True 5224 mRNA 0.57 61 11684362 11786933

Neighbor

gene id symbol gene type direction distance location
dnai3 wdr63 coding upstream 107728 11556357 ~ 11576634 (+)
LOC120566036 LOC104946463 coding upstream 135264 11525470 ~ 11549098 (+)
si:ch211-262h13.5 NA coding upstream 160414 11514958 ~ 11523948 (+)
LOC120565022 NA coding upstream 194324 11473356 ~ 11490038 (+)
LOC120566075 LOC101470345,LOC102300495,LOC102205443,LOC103370586 coding upstream 327491 11311738 ~ 11356871 (+)
ddah1 ddah1 coding downstream 47622 11834555 ~ 11916573 (+)
c9h1orf210 LOC104958367 coding downstream 183430 11970363 ~ 11980286 (+)
ap1m3 LOC104919037,LOC103355575,LOC103463064,LOC107392936,LOC106528254 coding downstream 194596 11981529 ~ 12014434 (+)
ebna1bp2 NA coding downstream 269205 12056138 ~ 12061625 (+)
usp1 NA coding downstream 663119 12450052 ~ 12459145 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding upstream 25290 11651522 ~ 11659072 (+)
G94747 NA non-coding upstream 107101 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 444125 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 489432 11194647 ~ 11194930 (+)
G94690 NA non-coding upstream 508145 11176004 ~ 11176217 (+)
G94813 NA non-coding downstream 129698 11916631 ~ 11920037 (+)
G94997 NA non-coding downstream 1078979 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 1208302 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 1320756 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 1359372 13146305 ~ 13146795 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 226216 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 736046 10946932 ~ 10948316 (+)
G94598 NA other upstream 743118 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 1269536 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 1524481 9985719 ~ 10159881 (+)
znhit6 znhit6,LOC102790327 other downstream 2202 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 374705 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 955872 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1218635 13005568 ~ 13100445 (+)
G95046 NA other downstream 1386092 13173025 ~ 13220372 (+)

Expression


Co-expression Network