atg4c (atg4c)


Basic Information

Item Value
gene id atg4c
gene name atg4c
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 12512606 ~ 12522434 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812170.1
CGTGACTTGACTCTTCTACTTCCTTAAAGTGTAAACATTGGAGACCTCAGGGCATTGAAGTTAACGTTAAGCCATGGGCCGTGCACCGTGTTAAATTATCGGTATTCTAACAATATACCGCGTTGTGAAGTTTGCACGTAGCTGCAAAGCGTCTGGAAAAGCTGGATCGAAGAAGAAGCTCGAAGggtgtgtgtgctgtgtgggaATGGGTTACATTCCTTGCTGGTCCAAATGCAGAATAAAGGGAGCGACGAGGTGGAAACATTGAAGACAAAGTTCTTGTCTGTGTGGCACAATGTGAAGTACAGTTGGGCTCTCAAATCAAAGACTTCATTCAGTAGAAATTCCCCAGTGTTTCTCCTTggaaaatgttaccactttaaaGCTGAAGATGACGACGGTGTTACAGAAACCTGCTTCGAAGCCTCTGGTGAGGATTTCGTCATGGGGAACGCGGAGGCTTTCCGCAGGGATTTTGCATCCCGAGTGTGGCTCACCTACAGGGTGGAGTTGCCTCCTCTGCCCAGCTCCACCTTGACCTCCGACTGCGGCTGGGGCTGCATGCTGAGAGCCGGGCAGATGATGCTGGCTCAGGCACTTATTCTGCACTTCCTGGGCAGAGACTGGACCTGGTCGGAGGCGATGACGCTCCAGCCTTTAGACACAGAGACGTGGACTACCACTGCAGCCAAGCGTCTTGTCGCCTCTCTGGAGGCCTCTCTGCAAGGTTCCCCCAGGCCCTCCGATGATGGCTCACCACCCATGCACCAAGCCCAGGCACCGGGATGTGCAGAAGAGGCAGATGCACATTTGAAAGAGATGTACCACCGCACTCTGGTGTCCTGGTTTGGGGACAGCCCCTTGGCTCAGTTAGGCCTCCACAGTCTGGTCCGCATGGGTCTGACAATGGGGAAACAGGCAGGGGACTGGTATGGGCCTGCTGTAGTGGCTCACATCCTCAAgAAAGCCGTCGAGGAGGCGATGGACCCTGGCTTGGCGGGTATAACTGCTTATGTCTCCCAGGACTGCACAGTGTACAATGCCGATGTCATCGATAGCCACAGGGCACCAAGAGCAGGGCAGACCTCTGCTGAGAGATCCGATGCCCCTCCTTCCCCACACAGTGACCAAGCAACGTCTGCCTCCACCCTGTCTGACAGCCGAGCCGTCATCATCCTCATCCCTGTGCGGCTGGGAGGGGAGAAGACAAACCCTGACTATTTCAACTTTGCCAAGAGCATACTGAGTCTGGAGTACTGCATAGGCATCATCGGGGGGAAGCCCAAACAGGCCTGCTACTTTGTAGGATTTCAAGATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACCAGCGATTTCCCTCTCCAGTCATATCATTGCCCGTCACCAAAGAAGATGCCTTTCAGCAAGATGGACCCAAGCTGCACCATAGGTTTCTACTCTAGAAGTGCTCAAGACTATGAGAGAATCAGTCAAGAGCTGTCTAAGGTGCTGCAGCCGTCAGCGAGGGAGAAATACCCTGCGTTCACTATCGTGCAAGGTCATAGCAGAGATTACGACCTGTCTGCAGGCGTGACCCCGGAGAAGAGAGAATGGCCCTTCATCCGTGACCCGCGGAGGACGGTCACCACTGCCGGAGACTTTGTGCTGCTTTGACAGCGCTGTTTAAAAGACTACTGACAGGAAAGTTCTTCTGAATCAAACTGCTTGATATCTAAAGCCTAAGTGTCTTAAGTCTGTTTGACACTGATGGTTATGGAACTCTATACAACTACAGTAACTCAGTTTATAAATCCTGGAAACTTTGTTGCTAAGCAATATTTGCCAAAACTGTTATTAACTGGTTGGTCTTGTGTTTGTTAGCTGGAAATTGTACCTTGCTGAACATTTAGTCAGGAAGCTTTTGGTGCTCTGCCTAATTTAATGAACCTAAAatgtttggtaacactttacttgaatgTATCTACATacgagtgacatgacactgaaccctaaccataactctaaccctaaccataacttgtcatgacaaaaaccccaaatgacacttactaaaagaagcgttatgtcagaaacgtttatgacttgtttataatgtttatgacacgttcatgaccgtgtcatgtcactcttatgtagatacgtTCAGGTAAACCAAATGTTTATACTCGTCTAGGGAAGGGAACATCCACGGGGACattatttgtgatttttttatggATAAGCTATTGATAgatgtcagatttttttttatttttttttattttgcacctTACATCCAGTGAAGAAGTCTCAAAGGGATCTGCTTATAATGATCATAAGGTCCAGTTCAGCACTCTCACGTCAACATGCTTACAAGGCTATCCGTGTCATAGTAACCATGACTAAAATCAGTGTTGGCCCACTTTAAAATCTTTTCAGAGGGCTACACCTACAGTAGTTAGACTGTGTGGTTAGCACTGGGATTAGAGAAGTATTATAAAGCCTTAATTAATATGGTCCAagggctttttctttttttaaatgtagccaAGTAACTTTTCCAAACTTCTCTGCCAAAAACATTTCCTCAAACAAGAGGAGACTTTCTTTATAGTTCTGCCAACATTTTTTTCCTATTCACACTAGAGCTAATTTCTTTGTCTAAGCAATAATATGATGGTCTTGTATGATTGATATTTGCTTGCCTTAGTGTATTTTGAGTGGTATTAATTTTTACTGAGTTATGCATCACCGTGCAAGTGCACCAGTGGTGACAGCAGAGTTTGTCAAAGGGATACTGCCATGTGCTATACCTCACCAAGAACTGTCTGTTATGAATTACCctttacaatatattttttttagatgtaaAAGTATTTACTGTATTCGTCTAACACACACTgaagtaaaaacataaaaaacactcCTAAGTCAGATTCAGGGAATTACAATATACAGTAAAGTTGAATTTGTTTGGAGTAGCAATCTACaccacatacagacatataaaCCTTCCtatatcaatattctttttatATGCTGTGTGTGATTTAATCATTTCGAACCATCTTAACAAAATAGAAGTGGAGAAGTACGCCAGAACACGTTACGTTACAAAACTTGATCATGCACTTTGATTTATCACTTCAAGTATTCCGACTGTTGAACTCCGACAAATGCTTTCCTGCATTACAACACGCTGCATGTCTGTTTGCATTAATTAACTTACAAAATGTatcataaaatgtaaaatgtttttaacacTGCCATgcaaaaaagttgaataaagtcaaaatattAAAACTTT
>XM_039812171.1
CGCGAGATCACGTGACTTGACTCTTCTACTTCCTTAAAGTGTAAACATTGGAGACCTCAGGGCATTGAAGTTAACGTTAAGCCATGGGCCGTGCACCGTGTTAAATTATCGGTATTCTAACAATATACCGCGTTGTGAAGTTTGCACGTAGCTGCAAAGCGTCTGGAAAAGCTGGATCGAAGAAGAAGCTCGAAGggtgtgtgtgctgtgtgggaATGGGTTACATTCCTTGCTGGTCCAAATGCAGAATAAAGGGAGCGACGAGGTGGAAACATTGAAGACAAAGTTCTTGTCTGTGTGGCACAATGTGAAGTACAGTTGGGCTCTCAAATCAAAGACTTCATTCAGTAGAAATTCCCCAGTGTTTCTCCTTggaaaatgttaccactttaaaGCTGAAGATGACGACGGTGTTACAGAAACCTGCTTCGAAGCCTCTGGTGAGGATTTCGTCATGGGGAACGCGGAGGCTTTCCGCAGGGATTTTGCATCCCGAGTGTGGCTCACCTACAGGGTGGAGTTGCCTCCTCTGCCCAGCTCCACCTTGACCTCCGACTGCGGCTGGGGCTGCATGCTGAGAGCCGGGCAGATGATGCTGGCTCAGGCACTTATTCTGCACTTCCTGGGCAGAGACTGGACCTGGTCGGAGGCGATGACGCTCCAGCCTTTAGACACAGAGACGTGGACTACCACTGCAGCCAAGCGTCTTGTCGCCTCTCTGGAGGCCTCTCTGCAAGGTTCCCCCAGGCCCTCCGATGATGGCTCACCACCCATGCACCAAGCCCAGGCACCGGGATGTGCAGAAGAGGCAGATGCACATTTGAAAGAGATGTACCACCGCACTCTGGTGTCCTGGTTTGGGGACAGCCCCTTGGCTCAGTTAGGCCTCCACAGTCTGGTCCGCATGGGTCTGACAATGGGGAAACAGGCAGGGGACTGGTATGGGCCTGCTGTAGTGGCTCACATCCTCAAgAAAGCCGTCGAGGAGGCGATGGACCCTGGCTTGGCGGGTATAACTGCTTATGTCTCCCAGGACTGCACAGTGTACAATGCCGATGTCATCGATAGCCACAGGGCACCAAGAGCAGGGCAGACCTCTGCTGAGAGATCCGATGCCCCTCCTTCCCCACACAGTGACCAAGCAACGTCTGCCTCCACCCTGTCTGACAGCCGAGCCGTCATCATCCTCATCCCTGTGCGGCTGGGAGGGGAGAAGACAAACCCTGACTATTTCAACTTTGCCAAGAGCATACTGAGTCTGGAGTACTGCATAGGCATCATCGGGGGGAAGCCCAAACAGGCCTGCTACTTTGTAGGATTTCAAGATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACCAGCGATTTCCCTCTCCAGATGTGTGAAGCTGCCACTTAAGAGAAATACGGCAAATACCAGATCAGTCATATCATTGCCCGTCACCAAAGAAGATGCCTTTCAGCAAGATGGACCCAAGCTGCACCATAGGTTTCTACTCTAGAAGTGCTCAAGACTATGAGAGAATCAGTCAAGAGCTGTCTAAG

Function

symbol description
atg4c Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

NR:

description
cysteine protease ATG4C

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812170.1 True 3313 mRNA 0.44 11 12512616 12522434
XM_039812171.1 False 1569 mRNA 0.53 11 12512606 12520145

Neighbor

gene id symbol gene type direction distance location
angptl3 angptl3 coding upstream 13559 12494754 ~ 12499047 (+)
usp1 NA coding upstream 53461 12450052 ~ 12459145 (+)
ebna1bp2 NA coding upstream 450981 12056138 ~ 12061625 (+)
ap1m3 LOC104919037,LOC103355575,LOC103463064,LOC107392936,LOC106528254 coding upstream 498172 11981529 ~ 12014434 (+)
c9h1orf210 LOC104958367 coding upstream 532320 11970363 ~ 11980286 (+)
foxd3 foxd3,LOC102785247 coding downstream 139485 12661919 ~ 12663893 (+)
alg6 alg6,LOC102784959 coding downstream 147787 12670221 ~ 12690258 (+)
efcab7 efcab7 coding downstream 180710 12703144 ~ 12717685 (+)
pgm1 pgm1 coding downstream 197657 12720091 ~ 12730969 (+)
cachd1 cachd1 coding downstream 373853 12896287 ~ 12994764 (+)
G94813 NA non-coding upstream 592569 11916631 ~ 11920037 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding upstream 853534 11651522 ~ 11659072 (+)
G94747 NA non-coding upstream 935345 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 1272369 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 1317676 11194647 ~ 11194930 (+)
G94997 NA non-coding downstream 343478 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 472801 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 585255 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 623871 13146305 ~ 13146795 (+)
LOC120564967 NA non-coding downstream 850010 13372444 ~ 13375668 (+)
lrp8 LOC103355569 other upstream 69526 12161638 ~ 12443080 (+)
znhit6 znhit6,LOC102790327 other upstream 690724 11789135 ~ 11821882 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 1054460 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 1564290 10946932 ~ 10948316 (+)
G94598 NA other upstream 1571362 10916925 ~ 10941244 (+)
ror1 ror1 other downstream 220371 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 483134 13005568 ~ 13100445 (+)
G95046 NA other downstream 650591 13173025 ~ 13220372 (+)
LOC120565776 NA other downstream 813300 13335734 ~ 13342098 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other downstream 856964 13379398 ~ 13382747 (+)

Expression


Co-expression Network