lrrc8db (LOC102192663,LOC101487848,LOC104931916,LOC103368774)


Basic Information

Item Value
gene id lrrc8db
gene name LOC102192663,LOC101487848,LOC104931916,LOC103368774
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29763669 ~ 29772684 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812172.1
AGCTTTCATGTACATCTTTTTTGGTATAACAAAACAAAGCTGTGTATGTAACTTTAAATTACACCCTTTTCACTTTTACGACGGTCCCTAACTTCAGTGGGTCATCTCTCCTACTTTCAATCCTTGCAGGCTTTAAGCTATGTGAAACATATCCTGTGCTACATCAGGAGATATTTATCTACATATATTTACTACAGAACCGTTGCCAATTGATGGTCATGGTGTAACGTAGGCTATAGCAACCTCGGTGAGTGTGGGTAACGTTACACTTCCAGCAGTTGGTGCTGCCGTGCCCGGCTGTACCGCCAGCCACCGGGGGACCCGAGCATCTGAAGCGGAGTGGGGGTAGTCAGCTAAGCTGCTTACAGCCCGGCCAGCAGGCCCACAGTTCAACTGATGCGAAGAAGGGACGGCTTTATCACCGCAGCGAAACATGGCATATAAAGAGAGGTGTTGTTCGGTATTGCTGGCATCGAAATAACTGGATCAGACATCCTGAAGgaatgtTCAGCCTCACAGAAGTAGCCTCCCTGAATGACATCCAGCCGACTTATCGAATACTGAAACCATGGTGGGATGTCTTCATGGATTATCTTGGTATTGTCATGTTGATGTTGGCCATATTTTCTGGAACGATGCAGTTAACTAAGGACCAAGTGGTTTGTCTTCCCATTATGGAACAAACTCCAGAGGGGGCTGGGGGCTTTTTAGGACCCCAACCCCCAGAGATAGTTGATAGTTTATGGAACAAAGAAAGCGCCGTTGGAGAGCAAGCCGCTCCTTTAATGGCTAGAAGGCCTCCTGATAGCATCGCCCCTACAGTTCACTTCACGCAGTCGGGTACTCTTGGGCAGCCTCAGCCTACAGGTGTCAGGACTAAGCTGGATTTTCAGCAGTATGTTTTTGTCAATCAGATGTGCTACCATGTTGCCCTTCCTTGGTATTCCAAATATTTCCCATACCTGGCTCTAATTCACACCATTGTATTAATGGTCAGTAGCAACTTCTGGTTCAAGTACCCAAAGACAAGTTCCAAAATAGAACATTTTGTTTCGATACTGGGAAAATGTTTCGAATCGCCTTGGACTACCAAAGCACTGTCCGAGACTGCCTGCGAGGACTCGGAGGAGAATAAGCAGAGACTGGCTGGGGCCTCCTCCCTCCTGAAGcatctgtcaacatgcagcgaGGAGGGGAGTCCAAATCAGTCCGCCCCAATGCTGACTAAACCTGGGCTCACGTTTTCTGCTGAAAAGCTTGTGAGTGAAGTTCCCGCCATGACCATTCTGGACAAGAAAGATGGTGAGCAAGCAAAAGCCCTGTTTGAAAAAGTCCGGAAATTCCGTGCCCATGTGGAAGACAGTGACTTGATTTACAGGCTGTATGCCATTCAGACAGTCATCAAAACAGTTAAGTTCATTTTGATCCTCTGCTACACGATGACTTTTGTTGCCTCTATAGAATTTGACCATGTGTGTGAGCCTGAAATAAAGCATTTGACTGGATACACAAAGTTCCACTGTACACACAACATGGCGTTCATGTTAAAGAAACTCCTTGTTAGTTATATTGCTCTTATATGCGTTTATGGCATAATCTGTATATACACACTGTTCTGGCTTTTTCGGAGACCACTTAAGGAGTATTCCTTTGAAAAAGTCAGAGAGGAGAGCAGCTTCAGTGATATTCCAGATGTTAAGAATGACTTTGCATTCCTCCTCCACATGGTCGATCAGTATGACCAGCTGTATTCAAAGCGTTTTGGTGTTTTTCTCTCTGAGGTGAGTGAGAACAAACTTCGGGAGATCAGCCTGAACCATGAGTGGACCTTTGAGAAGTTGCGGCAGCATGTGACGCGTAATTCTCAAGAAAAGTTGGAACTCCATCTTTTTATGCTCTCCGGGATGCCAGATGCTGTGTTTGATCTCACTGATTTGGAAATCCTTAAACTAGAATTAATCCCAGAGGCCAGGATAACAGCTAAAATCTCACAAATGATAAACCTCCAGGAGCTGCACTTGTATCACTGTCCAGCCAAAGTTGAACAGACTGCTTTCATTTTTCTGCGTGATCATCTCCGGTGCCTTCATGTCAAATTCACAGATGTTGCTGAGATTCCAAGCTGGGTATACTTGTTGAAAAATTTAAGGGAACTGTACTTGGTTGGTAACCTGAActctgaaaacaacaaaatgatcGGACTCGAGTCTCTGCGAGACCTCAGGCACTTAAATATTCTGCATCTCAAAAGCAACCTAACAAAGATCCCGACAAACATAACGGATCTGTCTCCACATCTGATCAAGTTGGTCATTCATAATGATGGTACAAAGCTCTTAGTGCTGAATAGTTTGAAGAAAATAATGAATCTCGCCGAACTGGAGCTTCTTAACTGTGAGCTGGAGCGAATCCCCCATGCCATTTTCAGTTTGAACAACCTTCAGGAACTTGATCTAAAATCCAACAACATTCGTACCATTGAGGAGATCATCAGCTTCCAGCACCTTAAGCGACTGACGTGCCTCAAACTTTGGCACAATAAAATCATCTCCATTCCATTGTCAATTAGCCATGTCAAAAACCTTGAGTCGCTCTATCTCTCACACAACAAGCTTGAGTCTCTACCCTCATCGTTATTCACCCTTCCCAAGTTGAGGTACCTCGATGTTAGCCACAACTCTATAGTGGTAATACCACTGGAGGCTGGCTTTCTGCAGAACCTCCAACATTTTGCCATTACCGGCAACAAAGTCGAGGTAGTTCCTAAGCAACTGTTCAAATGCAACAAACTGAGGACCTTATGTCTCGGTCACAACTGTATCTCTTCCATTCCAGAGAAAATTGGCCAACTGTCACAGCTGACACATTTGGAACTGAAGGGAAACTGTCTGGATCGTCTCCCGGCTCAGCTTGGTCAATGCAGCCTCCTGCACAGGAGCTGCCTGATTGTGGAGGATCATCTCTTTGACACGCTCCCCATGGAGGCAAAAGAGAGCATTAATCAGGAATCTAGTGCTTCTTTTCCAAATGGGTGTAAATGTCTAAGTGATGGACGGTAGTCACATCCTACGTGGCATAAAATGTCTGGCATTTCATCTTGGGTGTAAATAAGTCTTTTAAAAATTTGAAACTGTATTTACATGGTACAGTACTGGTGCACTTCATGATGTATTGGTAACTTATGAAATGAACATACCACAACACATACAAGGTCGGTACAACTGGAGAAATTTAGAGGAACTCTAGGATTGATCATGGCTGGTGTCATGTCTACAGTGGATCTATGGACATTTCTATCCTTTTGAAACAACCCTCCTTTTTATCTTTGTGATTTAAATTAATTGTATTTACATTAACTAGATACACCTAATTGACCTCAACTTAAAAGGGACAGTTTActcaaattacaaaaacacCTTTCCCGTAATGGTATCTAACCATGCAGTTAGTTCAGAAATTTCTGCCTCCACCCAAATAAAATTGATCTTAGTAGATTTTGGTCTGCACCTCACGGCAACAGGATATCatgtttgaaatgattcaaCAGCATTATTTCTACATTTTATCAAATATTCTTAGTGAAACCTGTTTACAGCAAGTTTGTTGATTATCCAGAGTGACTGGGTCATTCTGGAAGAAGATGTTGCTGTTGAAATGTTCAAGGATGCACAAAATGCCATTCCCCTCAATTGAATTGGGATGGAGGCAAGAAATCTTAAGTACGGATATTTCAAAACTTGAGGATGATGGCGAGATATAGTAAGCAAATATGTTTCTATGTTATCAAATATGTTGTTTCTGTTCTGttatttgggtgaactgaccccttaaaaaaaaaaaattctactcAAGATCCAATTGCCAGCTTCGCAATTTGGTGATATCAGACCGTCCTCTCAAAGAAAGCCGTATAGGTAGATTGTGCAAGCAGCCTATTATGACCCatatttatgttatgtttatgtCTAGTGGCTATAGTAATCATGGTGGGAGTAAAGGCGAAAATCAGGTGATGTAGTCTAAAAGCCAATTTGTGCTTCTACGTTAAATCAACGCTGTAGCTACGTACGTAGATACCGaccctacgccggaccctacgccgtagcctgacgtgcacctctcaaaaaatgtaacttcacTGTGACGCTCCGCCGcagcttggtagcgttgcatttctgtctactcatttcctggttctccttctccataaacaacatgaaatcaaggagaaggttaacttttcctgctacagatttccgactgtggtcagaaagcacacgGGGAGACACTTTGTGTCTCCCACTATGCCTCTAGAGTCGCCACTCGCTCTGAAGCTTATCGCGTCCCTCTCTCACTGGCTCTACCACACGCTCCCCACACACATGCCAGCcctaaagagatcgacgcacacaccaatgcACAAGTATAAaattcaggccacttacgtaggctacggcgaaagctctgcttggagcctccgcacaaccataaatcaagcttaagAGTGCCAAAgtgggttggggtggtggatgggtcaaacaaacccAGGACTCTCACCCAGGAGACAGCTGTTTGTGTGCCACgggaaaccaaaagtcaatgtTGACTTTCTTTAGGTAAACCAACTTTGTTACGGATTTACCCAatccatgatcttttcctaaccctaaccaagtagttttttgCCTAAACTTACCCAAGCAGttccgtttcacaacgttaaacaCGTGTTTACAACTACGACCGTTTCGCAACATTAAATAGAGCTGTCACGTGTTATGGTCACACGATCAAAACTGCCACCCTTGTCTAGGTTAGTGCTGCTGTCAGTGCCCTATGACCAAAAGGCACAGGTAAAAAGACTGGAGGTGGTCCCCGGGTGCCTGTTGCTGCCAACTGCTCCTGTATTGACACATTTAATTTCTCTGTGAATGATAAGAAAAGCACCTTTAAACTTTGAGCACCTTTTAAACAATGACATATGCTgcataaacaaattaaagaacTGTGTAGGTATAACCTAGTATTATTAACCTTATGCACTCTGATTTGAATATACCTTGTACTTTTACGCACCAACATGATGAGGTTCCCATCCAAACCTTGTCACTACTTCTTGAAAAGTCTTGATTCATGTTCATTATCACTCAGCGGTATCATTATTTTTGATACAGTTGATTTTTTCAAAGGAATAGATAGTACattgtttccttttttgtgtACAGCCAACCCACAAGTATGTTTTTTAGTTGTACTTTTGCTCACAATTGTTTTATTCTTGTAAACACTGTATTTTCCATGCATTTTGtgtgtaatttgtatgtatatattatctCATTGACTTTTATCTGTTCTTCTCTTTACACAGCACTTTGTGAACCTGGTTTTAAAATGTGCTAAATGAATCAAAAGCTGCTTTTGCACCAAGAGCATATTTGGAGGTTGTACAGTTAAATCTTGATGCCTGAAATACCCGCCAtttatgtttaaattaatttatcCATTGTTAAACAACAGTGTACATACAATACAATCTTCTTACTTAGTGTTGTTACTGCTTAGAAACACATCACAACTAGGAAACAGGGTTAAGAATGGGGTTTCTAAACATTTTGACCAATATACACAttacattcagtgtttttttcagaactgattacatttttacaatttGGTATACAAGTTTGTATTCCAAAAATGACAGATTTGAACAGCTAAACATGCAAATCACTGAATTGTCTCCTGCTGtttggtaaaaataaaatacatgaagCAGTATAAGACACAGTGCTCCTATACTTCACTTCACCAGTTCATTCAACATACTGCTTATGaatgacatatttttttttttttaacataggtgtatgaTAACTAGGCCATAGttacagtatttcacaaaaTACAAACTATATTCAATTATATATTCAATTCTTCTTTCTTActgatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagaaaaggcagATAGTTGTTTGCATATGAACATTGTGAGGCAAATCAACACATTTCACtcaaataaatatgaatgaCTAAAAATAA

Function

NR:

description
PREDICTED: volume-regulated anion channel subunit LRRC8D-like

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812172.1 True 6163 mRNA 0.42 2 29763669 29772684

Neighbor

gene id symbol gene type direction distance location
lrrc8c lrrc8c coding upstream 8260 29742393 ~ 29755409 (+)
lmo4b lmo4 coding upstream 327173 29422379 ~ 29436496 (+)
hs2st1b LOC103365674,LOC100712187 coding upstream 390203 29352402 ~ 29373466 (+)
LOC120565897 cldn18 coding upstream 431891 29326517 ~ 29331778 (+)
sox14 sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 coding upstream 495233 29266362 ~ 29268436 (+)
brdt NA coding downstream 428848 30201532 ~ 30244918 (+)
ephx4 ephx4 coding downstream 473120 30245804 ~ 30261307 (+)
btbd8 kiaa1107,LOC103368715 coding downstream 490293 30262977 ~ 30311025 (+)
LOC120565064 clg23h1orf146,LOC104946869 coding downstream 538518 30311202 ~ 30314472 (+)
LOC120565665 LOC103368809,LOC104921761,LOC103397662,LOC101078338,LOC106584167 coding downstream 624584 30397268 ~ 30403012 (+)
G99327 NA non-coding upstream 3303 29760043 ~ 29760366 (+)
G99299 NA non-coding upstream 67736 29695607 ~ 29695933 (+)
G99292 NA non-coding upstream 170046 29593365 ~ 29593623 (+)
G99261 NA non-coding upstream 324947 29438162 ~ 29438722 (+)
G99238 NA non-coding upstream 606562 29156684 ~ 29157107 (+)
G99329 NA non-coding downstream 1633 29774317 ~ 29775080 (+)
G99338 NA non-coding downstream 105188 29877872 ~ 29878121 (+)
G99356 NA non-coding downstream 267158 30039842 ~ 30040895 (+)
G99368 NA non-coding downstream 413023 30185707 ~ 30191840 (+)
G99379 NA non-coding downstream 438799 30211483 ~ 30345174 (+)
G99297 NA other upstream 98579 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 898182 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 989116 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 1617344 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 1679282 28027964 ~ 28084387 (+)
si:ch73-389b16.1 ccdc18 other downstream 654819 30427503 ~ 30429291 (+)
G99545 NA other downstream 1037834 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 1323197 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 1841205 31613889 ~ 31643446 (+)
G99791 NA other downstream 1850014 31622698 ~ 31625796 (+)

Expression


Co-expression Network