XLOC_004692 (mrpl27)


Basic Information

Item Value
gene id XLOC_004692
gene name mrpl27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 21684239 ~ 21688087 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009297
GGGCCCTGAAGGATCACGGGAACGCGCCCGTTGCGTCACGTTTACGTCATCTAAGATGGCGGCGCTCATGTCCTTGCTGTTGAGATCCAAATCATGTATTCTGTTCAGTGAAACGCCCACTGTTGTACTGGCAAGGTTTGCTTCAAAAAAGTCAGGAGGGAGCAGCAAAAACCTTGGAGGAAAAAGTTCTGGTCGCAGATACGGCTACAAAAAACAAGAtgGGAACTTTGTACATGCAGGCAACATCCTCGCAACACAACGCAAGGGTTTAATGCGCTGGCATCCCGGAGCTCATGTCGGTATCGGAACCAATAAAACGCTGTATGCCCTTGAGGATGGTATCGTCAGATATACTAAGGAGGTTTATGTTCCTCTACCACGAAGTGCTGAAGCCAGAGAAAACATCCCACAACTTCCTAAGGGAGCTGTTCTGTACAAGACCTTCATCAACGTCGTTCCtacaaaacaggaaaataaattTACATTAGTGGACATGGTGTGAAAAAGACTTCTCTCAACCTCCCCTTGGTCTACTGGCAACCCACCAGGAACATTTTGATGGTCTCCTTTCAAATGTGTTCAGAAATTGATCTGGAATATATACATAATGATTTATTTGTACAGCTACTGTAGTATTCTAATAAACATGTTTACTCAGTAA

Function

symbol description
mrpl27 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL27 (mitochondrial ribosomal protein L27).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050522-129 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL27 (mitochondrial ribosomal protein L27).

Ensembl:

ensembl_id ENSDARG00000032985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009297 True 661 mRNA 0.44 4 21684239 21688087

Neighbor

gene id symbol gene type direction distance location
XLOC_004690 ca10a coding upstream 130602 21298317 ~ 21553637 (+)
XLOC_004691 FO704814.1 coding upstream 246781 21437346 ~ 21437458 (+)
XLOC_004689 NA coding upstream 577252 20806897 ~ 21106987 (+)
XLOC_004688 st6galnac1.2 coding upstream 899090 20691310 ~ 20785149 (+)
XLOC_004687 st6galnac1.1 coding upstream 998615 20678187 ~ 20685624 (+)
XLOC_004693 pkd1b coding downstream 9453 21697540 ~ 21748008 (+)
XLOC_004694 NA coding downstream 69730 21757817 ~ 21799396 (+)
XLOC_004695 NA coding downstream 329859 22017946 ~ 22019770 (+)
XLOC_004696 NA coding downstream 570875 22258962 ~ 22304841 (+)
XLOC_004697 hdlbpb coding downstream 716021 22404108 ~ 22445061 (+)
XLOC_004679 NA non-coding upstream 1179438 20491619 ~ 20504801 (+)
XLOC_004675 NA non-coding upstream 1418774 20263585 ~ 20265465 (+)
XLOC_004670 NA non-coding upstream 2224954 19458809 ~ 19459285 (+)
XLOC_004700 CR925753.1 non-coding downstream 890317 22578404 ~ 22578530 (+)
XLOC_004701 NA non-coding downstream 930301 22618388 ~ 22619122 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_03307922_03312636 NA coding CI01000063 null 3307922 ~ 3312807 (+)