depdc1a (depdc1)


Basic Information

Item Value
gene id depdc1a
gene name depdc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9575258 ~ 9587669 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812217.1
ATGAGTTCTCATGTTATCACTCCTGGACCGTACCGGGCCACAAAACTGTGGAATGAGGTGACTCGTTTGTTTCGGGCTGGTATGCCCGTCAGGAAACACCGCCAGAACTTCCGGCACCACGCCGCCTGCTTCACCGCCTCGGCCGCTGTGGATTGGATGCACCAGCTGCTCCGTAGCAACAACAATTTTGGCCCTGATGTCACCAGGCAGCAGACGGTGCAGCTCCTGAAGAAGTTTCTGAAGAACCACGTGATCGAAGATGTGAAGGGTCGCTGGGGCACAGAGGATTTGGAGGACAACAACACTCTGTACAGATTCCCCTCCACTTCCCCTCTGAAGCCCATTCCCTGTCCAGCCTCGGCCCCTGGCTCTATTAAGAAAAAATCTTCATTCAGGGACAAGGAGAGTTTCTTCAGGTTTAGGAATATCAAGAAGCAGCTTGAGAAGGAGACACAGGAAAATGTAGATCCTGCCCTCCAAGCAGAGGGAGAGAACGAGCCAATAGGAGAGCAGCAGGTGCCGAGACGAGAGCTGACGGTGGATGATGAACAGGAGATCTGGAGAGACATCACCCTGACCCAcCTGCAGAGGATTCTGGGCGTTGCATCTCTTGATGAGGTCTTAGACCAACGTTATGTAAACCCACAGAACATCATCCATAATATGACCAAAGTCAACAAGCATGGAGTGGTCACACTGGACGACAAGACCAATGACCTTCCACACTGGGTGTTGTCTGCCATGAAGAGCCTGGCCAACTGGCCGAAGTACGACAGCGCGCAGCCGTCCTATCCCGGCTTTGAGAGGGACGTCTTCAAAACAGTGTCTGATTACTTCTACAGCCTTCCGCAGCCAGTACTCACATACGAACTGTATGAACTATTTATCAACGTCCTGGTGTTTTGCGGGTACGTCGCAGCGCCCGCAATACCCCAGCGCGGGAAGCGCAAGAAGCCGGACCTCCCCTCAGTCCCGCCTCCAGCCAAGGCTTCTTTCCGCTCCACAGAATGCCTCCTCCTGTCGCTGCTCAGACAGGGGACGTGCGACGAGACGGAGTCGCCAATGAGCGAGGTGATTGGCGGGAAGCTTCAGTCGCGGCTGGCGGCGCTGGAAGGAGGCACTGCCGGCGCGGGTGACGGTCGGTTAGGTGGCAGCTGCGTGAGTCTGAGTACAGTTGGTTCCACGAGGCCTCGAACCAGGAGCTGCTCACTGGAAACCATCCTAGATGACTCTGCCCCGCTCACCAGGCAAGTGCTGTTCCTGTCCAATGACAGCCTGGCATCCTGCGCCTATAGCAACAGGTGCCAGGATGACGGCCCTGTCATCACAACCCCCCACAGTCATGCCGACTCTAAATCTGCGTCCAAAGCAACCCCCTTAACTTGTGAAAAGGCTCCAGGAGGTCCAACCAGAAGGTACAGCCGCTCCTTGCGGCCGCACAGCGTAGGTAGCTGTCTGGACATAGTCGTAGAAACCAGGGAGGAAGAAGACAAGGAGACCAAGTGGCAGGGCCGAGCAGCCAGCTGCCTCAACGTCAACACTCCTGCAGAGCAGCATCACTCCTCCTCCGCTTCACGTCCTCCCTCGTTGCCCTCCTATCatccctccttttcctcctaTCATCCTTTCGCCCCCTTCCCTTCATGCGCTTTGGCCAAAGTACACGGGCCCCATGCTCCTACAGGACCTAGTGGGCCCAGACCCGCCTCCAGTACCTCTGATCTTTGGACGCTCCCTGCACCTGCTGTCGCCCGGCGCTGCCTCAGCTCTCTGGATGTGTCGAAGCCTGTTTCACTGTTCGCTCCGCCTGTCCGTGTGCCCGCCAGCATCTCCCAGCCCCCCCAACCCAAACCTGAGCACAgCCTTCTCCAGCCTCAGTGTGAGCGTGTGGCCATCGAGGCCCTGCAGCTTtgcaccctcctcctcccccccaacTCCCGCAGGAAGTTGCAGCTCCTTATGAGGATGATGTCGCGCATCAGCCAGAACGTGGACATGCCCCGCCTCCACCCCGCCATCGGCACGCGGACACTGATGGTTCACACGTTTTCCGGCTGTGTCCTGGGCAGCGCCGAGGAGTGTGATTTGGACGAACTGTTAGCTACCAGACTGGTGTCATTTCTAATGGACCATCAACACAGCATCCTCTCGGTCCCAGAGTACCTTCTCAGTGCTATCAATGACCATATACAGTACCTGCGCACTGTACAGGTCCCCATCGATGGTGTTTCCAATGTCGATGGCGGCAATCCAGTTTGCGTTCCAATGCCCATGTACGCGTTCTGCCGTCAAATTAGCGGCGCCGAGTTTGAACAGCAAAAGCTGGCCTCTTCCCAGAAGGCCATGGAGGAGTTGCTGGAGATGCTGCTGGCCGACCAAAACATGAGTGAGAAGGACAGACGCAAGAAACTGAAGCAGTTTCAGAAGCAGTACCCAGACATCTACAGTCGTCGGCTCCCCTCCTCAGACGGCACTAACAACAAACCAAAGATTAAACCTCCACTTCTCAACATCAAGAAGACCAAAGCTTTCAGCATCAGGAACTAAACCAACCATACAGGTTGTCCCCATTCTAGAAGCCGCAGTCATTGTTCCGCTGCACTGATACTGCACTGATACTTAGAGATCTCGAGAATTCACTCCTCGTTGCGGCCGTTAACTCGTTCTcgttttagttttagtcattCCTGCCGTgtctcatgtactgtatgtagtaaTGGGAGAGATAATGCAGACTGGAagacttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggtgtgtgtgtgtggtgaccgCTGAATAAGATGAAGGAAAGTCGACAGTTCAGTTCACATTGATTACTGTGTTCAAATATAATATGGTTTTATTAAGCAaggttttttttgggaaaaagttTTTGAGTAACATCTGTGATAATTTGTAACGGTCAGATTTTCTATCTACCCATTTTCTTTTCCCCCTCCTGTCTTCTCTATTGctttggaagtgtgtgtgtatgtgtgttgcatTTTGGGAGAAATAATTCTATGATCACTGGTCAATATGGGAATATTTAGATTATAGATTTcttaatttatatgaatgatAACATTGGGAGCAGTGCTTAGATATCCTTGCTTGAGGTGTTTCTTGTCATGTTAACTGTTTTTATAGACTTCACTAAACATTGTTTATCATAGATTCtcaagtttaatttaaaatgatctTTAGTTTTTAGATgtggaacctttttttttccttcagaaTTGTCATTCTTGTCCTTTGagtcttttcttcctttttgctTTTAAAGCAGTTTGTACAGGAATGTTTAAGGCTTTCTCATCGGGGATCTTTTGATTTTCAGGATCTCCGCTTTTTTTCCATATACAACTCTGTTATTTTGAAATGGAGCTGGCCCTTCCCAGTTTCTTTCATTCCATGAGTTTGTGTCTCATATCCAACCCATCCCTGTTTAGTTTATTGGATAGAGAAATGTTTTGCACTGGAGTTAGGCATTGCAAATGGCCAGCAAGCTTCTGCCAATCATCAGAATAGTTAATTTATACACATTTTAATGTATATTTAGACTCCCTAGAGAAGGTTTCCCTAAACACCTGTCATAATTTGGGTTGAAGGTTGCTAATGCTTATGAATTTAACCTTGCATGTTTTCTCAACAGCTGTACGCATTGCCTCTAATGAGAGAAATAGTTGTCAAAAAGCATCCATTCATTTCAGTGATGGACGCTATTCAGTAAACAGAAGTGCAATACAGAACCCATTTTATGTATGAGTGTCTGAGGTAACATGTTTGGCTTAAAATTtcaaactattttttatttatctgatATGAAGTATTAGTTCTACCCTGATGTGTTTGTCTATAcctcaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacatcagCAGTGTTATCAGGGGTGTTATATTGTACGCCTACACAGTTGTGCTCTTCCTCTATATTGTTTACTATGCAAAGTCCTGGGAAATAAATCTGTTTAGCAGTTtatttata
>XM_039812218.1
CCAGAAAAACACGGCTCGTAATTTTGAACAGACGGAGAGCAGCCAGGCAGAGCTGTGTGTATCTTCAATGCTGCCATTCATTATATGGTAGCAAAACATCGGTTAATTCCTTCCCTGAGTAATGGATATTTGTACCTCTTGTCATATCGGATGAAGACAAACGTTTTGTGTGATAAATATGAGTTCTCATGTTATCACTCCTGGACCGTACCGGGCCACAAAACTGTGGAATGAGGTGACTCGTTTGTTTCGGGCTGGTATGCCCGTCAGGAAACACCGCCAGAACTTCCGGCACCACGCCGCCTGCTTCACCGCCTCGGCCGCTGTGGATTGGATGCACCAGCTGCTCCGTAGCAACAACAATTTTGGCCCTGATGTCACCAGGCAGCAGACGGTGCAGCTCCTGAAGAAGTTTCTGAAGAACCACGTGATCGAAGATGTGAAGGGTCGCTGGGGCACAGAGGATTTGGAGGACAACAACACTCTGTACAGATTCCCCTCCACTTCCCCTCTGAAGCCCATTCCCTGTCCAGCCTCGGCCCCTGGCTCTATTAAGAAAAAATCTTCATTCAGGGACAAGGAGAGTTTCTTCAGGTTTAGGAATATCAAGAAGCAGCTTGAGAAGGAGACACAGGAAAATGTAGATCCTGCCCTCCAAGCAGAGGGAGAGAACGAGCCAATAGGAGAGCAGCAGGTGCCGAGACGAGAGCTGACGGTGGATGATGAACAGGAGATCTGGAGAGACATCACCCTGACCCAcCTGCAGAGGATTCTGGGCGTTGCATCTCTTGATGAGGTCTTAGACCAACGTTATGTAAACCCACAGAACATCATCCATAATATGACCAAAGTCAACAAGCATGGAGTGGTCACACTGGACGACAAGACCAATGACCTTCCACACTGGGTGTTGTCTGCCATGAAGAGCCTGGCCAACTGGCCGAAGTACGACAGCGCGCAGCCGTCCTATCCCGGCTTTGAGAGGGACGTCTTCAAAACAGTGTCTGATTACTTCTACAGCCTTCCGCAGCCAGTACTCACATACGAACTGTATGAACTATTTATCAACGTCCTGGgCCTTCTCCAGCCTCAGTGTGAGCGTGTGGCCATCGAGGCCCTGCAGCTTtgcaccctcctcctcccccccaacTCCCGCAGGAAGTTGCAGCTCCTTATGAGGATGATGTCGCGCATCAGCCAGAACGTGGACATGCCCCGCCTCCACCCCGCCATCGGCACGCGGACACTGATGGTTCACACGTTTTCCGGCTGTGTCCTGGGCAGCGCCGAGGAGTGTGATTTGGACGAACTGTTAGCTACCAGACTGGTGTCATTTCTAATGGACCATCAACACAGCATCCTCTCGGTCCCAGAGTACCTTCTCAGTGCTATCAATGACCATATACAGTACCTGCGCACTGTACAGGTCCCCATCGATGGTGTTTCCAATGTCGATGGCGGCAATCCAGTTTGCGTTCCAATGCCCATGTACGCGTTCTGCCGTCAAATTAGCGGCGCCGAGTTTGAACAGCAAAAGCTGGCCTCTTCCCAGAAGGCCATGGAGGAGTTGCTGGAGATGCTGCTGGCCGACCAAAACATGAGTGAGAAGGACAGACGCAAGAAACTGAAGCAGTTTCAGAAGCAGTACCCAGACATCTACAGTCGTCGGCTCCCCTCCTCAGACGGCACTAACAACAAACCAAAGATTAAACCTCCACTTCTCAACATCAAGAAGACCAAAGCTTTCAGCATCAGGAACTAAACCAACCATACAGGTTGTCCCCATTCTAGAAGCCGCAGTCATTGTTCCGCTGCACTGATACTGCACTGATACTTAGAGATCTCGAGAATTCACTCCTCGTTGCGGCCGTTAACTCGTTCTcgttttagttttagtcattCCTGCCGTgtctcatgtactgtatgtagtaaTGGGAGAGATAATGCAGACTGGAagacttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggggtgtgtgtgtgtggtgaccgCTGAATAAGATGAAGGAAAGTCGACAGTTCAGTTCACATTGATTACTGTGTTCAAATATAATATGGTTTTATTAAGCAaggttttttttgggaaaaagttTTTGAGTAACATCTGTGATAATTTGTAACGGTCAGATTTTCTATCTACCCATTTTCTTTTCCCCCTCCTGTCTTCTCTATTGctttggaagtgtgtgtgtatgtgtgttgcatTTTGGGAGAAATAATTCTATGATCACTGGTCAATATGGGAATATTTAGATTATAGATTTcttaatttatatgaatgatAACATTGGGAGCAGTGCTTAGATATCCTTGCTTGAGGTGTTTCTTGTCATGTTAACTGTTTTTATAGACTTCACTAAACATTGTTTATCATAGATTCtcaagtttaatttaaaatgatctTTAGTTTTTAGATgtggaacctttttttttccttcagaaTTGTCATTCTTGTCCTTTGagtcttttcttcctttttgctTTTAAAGCAGTTTGTACAGGAATGTTTAAGGCTTTCTCATCGGGGATCTTTTGATTTTCAGGATCTCCGCTTTTTTTCCATATACAACTCTGTTATTTTGAAATGGAGCTGGCCCTTCCCAGTTTCTTTCATTCCATGAGTTTGTGTCTCATATCCAACCCATCCCTGTTTAGTTTATTGGATAGAGAAATGTTTTGCACTGGAGTTAGGCATTGCAAATGGCCAGCAAGCTTCTGCCAATCATCAGAATAGTTAATTTATACACATTTTAATGTATATTTAGACTCCCTAGAGAAGGTTTCCCTAAACACCTGTCATAATTTGGGTTGAAGGTTGCTAATGCTTATGAATTTAACCTTGCATGTTTTCTCAACAGCTGTACGCATTGCCTCTAATGAGAGAAATAGTTGTCAAAAAGCATCCATTCATTTCAGTGATGGACGCTATTCAGTAAACAGAAGTGCAATACAGAACCCATTTTATGTATGAGTGTCTGAGGTAACATGTTTGGCTTAAAATTtcaaactattttttatttatctgatATGAAGTATTAGTTCTACCCTGATGTGTTTGTCTATAcctcaaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacatcagCAGTGTTATCAGGGGTGTTATATTGTACGCCTACACAGTTGTGCTCTTCCTCTATATTGTTTACTATGCAAAGTCCTGGGAAATAAATCTGTTTAGCAGTTtatttata

Function

symbol description
depdc1 Predicted to enable GTPase activator activity. Involved in negative regulation of transcription, DNA-templated. Located in nucleus. Part of transcription repressor complex.

NR:

description
DEP domain-containing protein 1A-like isoform X4

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812217.1 True 4145 mRNA 0.49 12 9575436 9587669
XM_039812218.1 False 3360 mRNA 0.45 11 9575258 9587669

Neighbor

gene id symbol gene type direction distance location
trnah-gug_12 NA coding upstream 2889 9572298 ~ 9572369 (+)
LOC120566012 NA coding upstream 69331 9406710 ~ 9505927 (+)
LOC120566014 NA coding upstream 101884 9462445 ~ 9473374 (+)
LOC120564889 rgs2,LOC103367537 coding upstream 491401 9080859 ~ 9083857 (+)
LOC120566074 LOC104935955,LOC103367504 coding upstream 504582 9067178 ~ 9070676 (+)
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding downstream 1487 9589156 ~ 9603575 (+)
fnbp1l fnbp1l,LOC102783810 coding downstream 27126 9614795 ~ 9671788 (+)
hps3 hps3 coding downstream 178407 9766076 ~ 9785140 (+)
LOC120565507 NA coding downstream 198123 9785792 ~ 9796989 (+)
LOC120565621 NA coding downstream 263456 9851125 ~ 9865455 (+)
G94238 NA non-coding upstream 23567 9547714 ~ 9551691 (+)
G94231 NA non-coding upstream 34199 9540537 ~ 9541059 (+)
LOC120566016 NA non-coding upstream 79901 9493981 ~ 9495357 (+)
G94232 NA non-coding upstream 89293 9484003 ~ 9485965 (+)
LOC120566015 NA non-coding upstream 137637 9434721 ~ 9437621 (+)
G94259 NA non-coding downstream 74463 9662132 ~ 9679737 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding downstream 104260 9691929 ~ 9693033 (+)
G94373 NA non-coding downstream 313526 9901195 ~ 9902122 (+)
LOC120565916 NA non-coding downstream 321238 9908907 ~ 9912100 (+)
G94400 NA non-coding downstream 393753 9981422 ~ 9983844 (+)
G94239 NA other upstream 17690 9552296 ~ 9557568 (+)
LOC120566011 NA other upstream 31723 9384505 ~ 9543535 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 406381 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1288822 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1670011 7896145 ~ 7905247 (+)
G94281 NA other downstream 229952 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 256602 9844271 ~ 9846275 (+)
G94376 NA other downstream 314616 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 345944 9933613 ~ 9948237 (+)
LOC120565490 NA other downstream 398050 9985719 ~ 10159881 (+)

Expression


Co-expression Network