fnbp1l (fnbp1l,LOC102783810)


Basic Information

Item Value
gene id fnbp1l
gene name fnbp1l,LOC102783810
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9614795 ~ 9671788 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812222.1
ggaggaggaggaggagtgtgtgtttgtcagcagACACTGAAGAACCGGAGTCCCAGCGGCAGTTCAGGAGAGTCTTGAGCGGGGAAATCTCTGTCTAATACGGGAGAACTCAGAAGGGGGAATCCGCGATGAGTTGGGGAACGGAGCTCTGGGACCAGTTTGAAAATCTGGACAAACACACTCAGTGGGGCATCGACTTTCTTGAGCGCTATGCAAAGTTTGTCAAGGAGAGGCTGGACATAGAGCAGAACTACGCCAAACAACTacgGAACTTGGTGAAGAAGTACTGTCCAAAACGCGCCAAAGATGAGGAGCCGAGGCGAGTAAACTTTCTGCTTTTATTTACTTCTTGGACGCAACTCAATTCGCCCGGTCAGAGGGAGGTGGTGGCGGAGGAGATGGCTCACAAGGTGTACGGAGAGCTGATGAGGTACAGCCAGGACCTCAAAGCTGAGAGGAAGCACCATCTACAGGAGGGCAGGAAGGCCCAGCAGCATTTGGACCATTGCTGGAAACAGATGGACAACagcaaAAGGAAGTTTGAGAGAGAGTGTAGAGAAGCGGAGAAATCCCAGATTACCTACGACCGGTTAGACAATGACATCAACGCCACCAAATCGGAGGTGGAGAAGGCCAAAGCCCAGTTCTACCTGCGCAATCACATGGCTGATGAGAGTAAGAACGAGTACGCCGCTCAGCTGCAGAACTTCAACGCAGAGCAGTGGAAACATTTCAACAACGCCATACCACACATCTTCAAGAATCTGCAGGACATGGACGAACGTCGGACGGTGAAGCTCGGAGAGACGTACCGGAGCTTCGCTGAGGCCGAGCGGAGAGTCATTCCCATCATCTCCAAATGCCTAGAAGGAATGGTTTCTGCTGCCAAAGCTGTCGATATGCGAAAGGACTCACTCATTGTCGTGGAATCGTTTAAGTCGGGCTTCGAACCTCCGGGCGACTTCCCCTTCGAGGACTTCAGTCAGAATCTGAGCAGAGCGGGTTCAGACGGCACCATCAGCAACACGCCCAAAGGAGACCGAGAAGGGGCCCCGGGGCCACGACCCGATCCGAAACATCCTATGAGCAGAACCAAGAACAAGCTGTGGCTGTTTGGGAAGAAACCAAAGGCCCCATCTCTGGAGGATTTCAGCCACTTACCCCCCGAGCAGAGGAGGAAAAGGCTGCAGCTGAGGATCGACGAACTCAGCAAAGAGCTCCAGAAAGAGATGGATCAGAGAGATGCCCTGAACAAGATGAAGGATGTGTATGAGAAGAATCCACAGATGGGAGACCCCAGCAGCCTGCAGCCCAAAATATCGGAGACCATATGTAACATGGAGAAGCTGCGCTCGGAAATTCACAAAAACGAGACTTGGTTATCTGAGGTGGAGGGAAAGCAAAGCTCCAGAGGAGACAGAAGACACAGCGCTGACAACCACCATCACACTCCTCAAGGCAGAGAGagTCCTGAGGGCAGTTATACAGACGACACCAGTCAGGAGCATCACACACCTCACAAGCGGCCCAGTCCTCCACAGCCCGGCCAACCCAACCCCGACCCGCACGAGTTTGATGACGAATTTGACGACGACGACCCGCTGCCAGTCATCGGACACTGCAAAGCGCTCTACTCCTTCGATGGTCAGAACGAGGGGACACTAGTGATGGCAGAAGACGAGGTGTTATACATCATCGAGGAGGATAAAGGCGATGGCTGGACGAGGGCGAGGAAGCAGAGCGGAGAGGAGGGCTACGTTCCCACCACCTACGTAGAAATCACCATGGAGAAAAACTGCAAAGGTGCTGTCACCTACATCTGAAGCTAACACTGTCTCTCTCATCCTGTCTGTCGTCCTCTCCGTCCTCCCCGCTTTCTGTTCCTCGAAAtaacactacaaaaaaaaaaaaaaa

Function

symbol description
fnbp1l Predicted to act upstream of or within autophagy; endocytosis; and signal transduction. Predicted to be located in cell cortex; cytoskeleton; and plasma membrane. Is expressed in several structures, including central nervous system; midbrain neural keel; neural plate; pronephric duct; and ventral mesoderm. Orthologous to human FNBP1L (formin binding protein 1 like).

NR:

description
PREDICTED: formin-binding protein 1-like isoform X1

GO: NA

KEGG:

id description
K20121 FNBP1; formin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812222.1 True 1914 mRNA 0.53 15 9614795 9671788

Neighbor

gene id symbol gene type direction distance location
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding upstream 11220 9589156 ~ 9603575 (+)
depdc1a depdc1 coding upstream 27126 9575258 ~ 9587669 (+)
trnah-gug_12 NA coding upstream 42426 9572298 ~ 9572369 (+)
LOC120566012 NA coding upstream 108868 9406710 ~ 9505927 (+)
LOC120566014 NA coding upstream 141421 9462445 ~ 9473374 (+)
hps3 hps3 coding downstream 94288 9766076 ~ 9785140 (+)
LOC120565507 NA coding downstream 114004 9785792 ~ 9796989 (+)
LOC120565621 NA coding downstream 179337 9851125 ~ 9865455 (+)
fxr1 fxr1,LOC106531534 coding downstream 295566 9967354 ~ 9979742 (+)
sox2 sox2 coding downstream 441194 10112982 ~ 10115322 (+)
G94238 NA non-coding upstream 63104 9547714 ~ 9551691 (+)
G94231 NA non-coding upstream 73736 9540537 ~ 9541059 (+)
LOC120566016 NA non-coding upstream 119438 9493981 ~ 9495357 (+)
G94232 NA non-coding upstream 128830 9484003 ~ 9485965 (+)
LOC120566015 NA non-coding upstream 177174 9434721 ~ 9437621 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding downstream 20141 9691929 ~ 9693033 (+)
G94373 NA non-coding downstream 229407 9901195 ~ 9902122 (+)
LOC120565916 NA non-coding downstream 237119 9908907 ~ 9912100 (+)
G94400 NA non-coding downstream 309634 9981422 ~ 9983844 (+)
G94405 NA non-coding downstream 511406 10183194 ~ 10183408 (+)
G94239 NA other upstream 57227 9552296 ~ 9557568 (+)
LOC120566011 NA other upstream 71260 9384505 ~ 9543535 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 445918 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1328359 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1709548 7896145 ~ 7905247 (+)
G94281 NA other downstream 145833 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 172483 9844271 ~ 9846275 (+)
G94376 NA other downstream 230497 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 261825 9933613 ~ 9948237 (+)
LOC120565490 NA other downstream 313931 9985719 ~ 10159881 (+)

Expression


Co-expression Network