nit2 (nit2)


Basic Information

Item Value
gene id nit2
gene name nit2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39945687 ~ 39954254 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812224.1
CTTTCGACTAACTATagactcttattttgaaaaccacATAGCCATCCGGAATCACGTGCTCTGCTGCTCTGGACTGTGACAACAAACAAGACCACTCTGCATTCATGTCCACTTTAGCTAAAGCCATGTCCAAGTTCCGCCTGGCTGTGGTCCAGCTGCAGGTGACGAGCGTCAAGGCGGACAACCTGAGCAGAGCCCGGAGGCTGGTGAAGGAGGCTGCGGGACAAGGCAGCAAAGTGGTGCTGCTGCCGGAATGCTTCAATTCTCCATATGGAACCAGCTTCTTCTCGGAGTATGCTGAGAGGATCCCAGGAGAGTCCACTCAGGTGCTGTCAGAGGCAGCCAAGGAGAATAAGGTGTTTCTAGTGGGAGGATCCATCCCGGAAGAGGACGGTGGGAAGTTGTACAACAGCTGTACAGTGTTTGGGCCTGATGGAGAGCTGATTCTTAAACATAGGAAGATTCACCTCTTTGACATTGACGTTCCTGGGAAAATCCGCTTCCAGGAGTCCGAGACTCTGAGCCCAGGCAACAGTTTGTCAATGTTCCAAACACCGTTCTGTAAGGTGGGTGTGGGGATTTGCTACGACATCAGGTTTGCTGAGCTGGCGCAGCTCTACAGCAGGGAGGGCTGTCAGCTGCTGGTCTACCCTGGGGCCTTCAACATGACCACAGGTCCAGCTCACTGGGAGCTGCTTCAGAGGGCGAGGGCGATTGATAACCAAGTGTACGTGGCCACGGCGTCTCCTGCCAGAGATGAAACCTCTTCATACGTGGCCTGGGGTCACAGCACTGTTGTAAACCCATGGGGAGAAGTTATCTCCAAGGCTGGACCAGAGGAGGCTGTGATTTATGCTGACATCGACCTGCAGTATTTAGCCGACATCCGGCAGCAGATCCCGATCACAGCGCAGCGTCGGGACGACATCTACGCAGTGACGTCTGTGCAGGGAGGATCCAGCTGAACGCCGGGACGTTTAAGAAAGAAGGTGCCAAGGTACCGACACAAACTATGCAACAGATCTCTGCCACCAAGCCAGCgccttcttctccctctgaagCAACGGGCCGCTCTGTCTGAATTGAGGGAAGAAGAGATGCAGTTGGCATGGCGATGCTCACCCACCTCTTAAGGATGGAACTGtgctttgttttgtgtgtctggtgCTGAAATGAGTGGCTGAGCAGTAGAAAATGTTGGTAAGCAGTTAATTGTTTATATCAGTTACCAAGTAAAACTAAGTATTTGCTGGTTAGAGCTTCTCTAATGTGACAGTCTACATCTTTTAATCCATTTGGTAGTATTGGGAGTAGAACCTTTGGGGTTTCTTTCTTTGGCTTGTgaaatgaattgaattgattgtTGGACCAGAGATTTTAAATCTAaaagaaatattcacattttctgTCGTGAGgcaaaaacaataaagatatctatcaaattaaataaaaaggcaA

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
omega-amidase NIT2

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812224.1 True 1458 mRNA 0.50 10 39945687 39954254

Neighbor

gene id symbol gene type direction distance location
tbc1d23 tbc1d23 coding upstream 6280 39923558 ~ 39939407 (+)
tomm70a tomm70 coding upstream 24897 39911630 ~ 39920790 (+)
wwc3 wwc3 coding upstream 82426 39828956 ~ 39863261 (+)
cldn34a NA coding upstream 122320 39816828 ~ 39823367 (+)
shroom2a shroom2 coding upstream 128971 39775793 ~ 39816716 (+)
gtpbp6 gtpbp6,LOC103356937,LOC102777366 coding downstream 4804 39959058 ~ 39963536 (+)
slc9a7 NA coding downstream 51993 40006247 ~ 40036320 (+)
tubgcp5 tubgcp5 coding downstream 98063 40052317 ~ 40069649 (+)
cyfip1 cyfip1 coding downstream 117788 40072042 ~ 40125946 (+)
herc2 LOC103356925 coding downstream 185179 40139433 ~ 40197238 (+)
G101600 NA non-coding upstream 37177 39905036 ~ 39908510 (+)
G101579 NA non-coding upstream 73514 39871656 ~ 39872173 (+)
G101519 LOC103356959,LOC104928288 non-coding upstream 265161 39680078 ~ 39680526 (+)
G101484 NA non-coding upstream 507622 39437654 ~ 39438065 (+)
G101464 NA non-coding upstream 666734 39278652 ~ 39278953 (+)
G101666 NA non-coding downstream 30216 39984470 ~ 40018693 (+)
G101674 rp2 non-coding downstream 46651 40000905 ~ 40003839 (+)
LOC120565265 NA non-coding downstream 89928 40044182 ~ 40045506 (+)
G101687 nipa1,LOC102781059 non-coding downstream 175547 40129801 ~ 40133354 (+)
G101688 NA non-coding downstream 180953 40135207 ~ 40135500 (+)
LOC120565298 cdkl5,LOC103356958 other upstream 205410 39693912 ~ 39740277 (+)
reps2 reps2,LOC102792668 other upstream 352925 39561061 ~ 39592762 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 481237 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 583954 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 1065082 38866435 ~ 38880605 (+)
atp10a atp10a other downstream 560839 40515093 ~ 40559895 (+)
G102165 NA other downstream 1498420 41452674 ~ 41453306 (+)

Expression


Co-expression Network