dr1 (dr1)


Basic Information

Item Value
gene id dr1
gene name dr1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30477831 ~ 30481380 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812227.1
CACCGTATCCGGTTCTTTGTTTGACGTGGTATCCGGACAaattaagctaatgttagccagaatacaaaattttaaatgaactactgGTAGCTTTAAGACTGTTTGAAATGTTTGATTCATTTGGTCGATGCAAGGGAGAGTAATCCGCAGTGTTGTGGCGACTACATTCTACTCGTCCGCTCTACCTAGCGAACTATTTAGTTACATATGGCAGGGACAGTTCATTGTTAGCTTAGCTTTAGCCATGCTCTCAGACTCCGCTTTCACTTGTCTTTTGGGTTGCTTGTGATAGGGACcacagctactagctagcttggtagctagctagctaagcatATGTTCTAGTATTAACGTTTTTGTGTTTCTCGCGTTGTTTCTTGGACCTTTAGTGTCTGTCACAATCCGTGTAACAGCGGTGCTCTGTAGAAGCTGCACCTCGTTAGTGTTAACACGTACAATTAGttgttagcaagctagctaaccGGCCAACTTTGAGGAaacgtctttttttttatgacatttaaaTTGATGTTGACGTTGCCTTCACCTGGACAATAATCTCCATTAACTCAAGAAGGCCTGTCAGCGTCTGATAACATTTTTCACCACCCAGTCAAGAACTGGAGCTTTCATTTCTGTGGTTTGTGGTTATTTTCCTGCCACGATGGCTTCTTCCTCTGGAAACGACGATGACCTCACCATCCCCAGGGCAGCTATCAACAAGATGATTAAGGAAACTCTCCCTAACGTACGAGTGGCTAACGACGCGAGGGAGCTTGTGGTGAACTGTTGCACAGAGTTCATACACCTCATATCCTCAGAAGCTAATGAAATATGCAACAAGTCCGACAAGAAGACCATATCTCCTGAGCATGTCATCAATGCCCTAGAGAGCCTTGGTTTCGCATCGTACATCACGGAGGTGAAAGACGTCCTGCAGGAGTGTAAAACTGTAGCTCTGAAGAGGAGGAAAGCCAGTTCTCGACTGGAGAACCTGGGTATCCCAGAGGAAGAGCTCCTCAGACAACAACAGGAATTGTTTGCCAAGGCgcggcagcagcaggcagaGCTCGCCCAGCAAGAGTGGTTACAGATGCAGCAGGCTGCCCAACAGGCACAGATGGCAGCCGCATCTGCCAGCGCTGCCCAGCAGGCTGGTTCCTCTCAGGATGAAGACGAAGAGGATGACATTTGATCCTAGGACGCCGTTCTACTTGTCCGAATCCTTTCCTGGGACAGTGTTGGCACACAAATCTCCCAGTGCTGTCATCGGCAGAGACATGAGGCGTGTTTGACTGCTGGTATACATAAATGTAACAAGGATAAAGCACATTGGAATAGACACTGAAGAGAAAGATGGAGGGGGATTCCATGAAAGCCACACGTTCAGACACCAGTACCTGAAAATGATTTGGATTGAGAGGCTATTAATGAAGTCTCATCTCCCTCCCCACACCCCCCTTTTTCCATTTGCTTCTGTTTAATTATGTCTTGATATTAAATTGTGAGTAATTTGTAGATATCTGGATGTGTTGTGTACACTGAAGGAAGACATTGCCTGGGATATGTCAGTGAATTTTGGTGTTAATGCAGCAAGTGTTTACTCCTTCAGGTACTGCACCAGATATCTTACTTCTGTCCGTTGTACTAGATCACTTTTGGTGGTTTAAGGAAACTGCTTCAGAATAATTTCAGAGCAGTCGATTTCTCCTTTCTTGTGGTTTGATGGTCACTTTTACAGAATGGGTTTTCTCTACCCCCTCTTGGTATATTTGTTCAACAGACGATCATTTGAGGGGTTGTCAATATAGGAATTATTTTGTTAAGTAGAGAAATAAATGGACATTTTGGTTAATTTTAGCTCATTCAGATACTTTATGTTGCATTTCCTTTCATCTTTGAGCCACCCACAGTATTGCTAATTAGTGACAcctttcagaaaatgtatatttttgtgtCATAGAACCAAAGATAGAGGACAGACTAACAGCGCAAagttaatgttttttaaaggtGTAGGTGCTACTGTGATTCTTGTTGCTGACTCCAGGTCAGTGTAAACAATGTTAAGGATTATTAACCTATGACTTTGTAAAATGCTTTGATATCCAGGCTGAATTTGTTATTTCCCTTCTCTTTGGGTGCAGTATCAAACATTTGCATTGTGACTGTGGTCAATCCTCAGTGTAAAGACAAGTAACCTAGTTGTGATACACATTCACTCGCCTATGCTAGAAAGTTGTATTCTTTAAGCAATAAAGGAATCATGTTTTTATATA

Function

symbol description
dr1 Predicted to enable TBP-class protein binding activity and core promoter sequence-specific DNA binding activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly; chromatin remodeling; and regulation of transcription by RNA polymerase II. Predicted to be part of Ada2/Gcn5/Ada3 transcription activator complex and negative cofactor 2 complex. Orthologous to human DR1 (down-regulator of transcription 1).

NR:

description
PREDICTED: protein Dr1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K21751 DR1, NC2-beta; down-regulator of transcription 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812227.1 True 2279 mRNA 0.43 3 30477831 30481380

Neighbor

gene id symbol gene type direction distance location
scinla NA coding upstream 17093 30450701 ~ 30460738 (+)
LOC120565665 LOC103368809,LOC104921761,LOC103397662,LOC101078338,LOC106584167 coding upstream 74819 30397268 ~ 30403012 (+)
LOC120565064 clg23h1orf146,LOC104946869 coding upstream 163359 30311202 ~ 30314472 (+)
btbd8 kiaa1107,LOC103368715 coding upstream 166806 30262977 ~ 30311025 (+)
ephx4 ephx4 coding upstream 216524 30245804 ~ 30261307 (+)
LOC120565046 LOC103368800,LOC102778977,LOC102199240,LOC101469842,LOC100700999 coding downstream 134 30481514 ~ 30485822 (+)
gng12b NA coding downstream 48588 30529968 ~ 30535873 (+)
sec16b LOC104942848 coding downstream 59977 30541357 ~ 30559154 (+)
LOC120566104 pbx1,LOC104964292,LOC108272157,LOC103479586 coding downstream 245633 30727013 ~ 30794829 (+)
uck2a uck2,LOC100698935,LOC102786757 coding downstream 342843 30824223 ~ 30829271 (+)
G99461 NA non-coding upstream 14442 30462560 ~ 30463389 (+)
G99406 NA non-coding upstream 88192 30388821 ~ 30389639 (+)
G99379 NA non-coding upstream 132657 30211483 ~ 30345174 (+)
G99382 NA non-coding upstream 189714 30287064 ~ 30288117 (+)
G99368 NA non-coding upstream 285991 30185707 ~ 30191840 (+)
G99488 NA non-coding downstream 40265 30521645 ~ 30522066 (+)
G99493 NA non-coding downstream 47446 30528826 ~ 30529088 (+)
G99494 NA non-coding downstream 48229 30529609 ~ 30529820 (+)
G99527 NA non-coding downstream 199126 30680506 ~ 30680716 (+)
G99528 NA non-coding downstream 212259 30693639 ~ 30694005 (+)
si:ch73-389b16.1 ccdc18 other upstream 48540 30427503 ~ 30429291 (+)
G99297 NA other upstream 812741 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 1612344 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 1703278 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 2331506 28137269 ~ 28146325 (+)
G99545 NA other downstream 329138 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 614501 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 1132509 31613889 ~ 31643446 (+)
G99791 NA other downstream 1141318 31622698 ~ 31625796 (+)
G99803 NA other downstream 1148436 31629816 ~ 31631501 (+)

Expression


Co-expression Network