ttr (ttr)


Basic Information

Item Value
gene id ttr
gene name ttr
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36343295 ~ 36349730 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812313.1
TCAGCTGCTCTTATAAGAGGCCTGAGACAGTGCAGGTCCTGTTTGATCATCAGTCCGTCCATCAGCCGACCATGATTCAACCAGTGCTCTGTCTGCTCCTAGCCTCGGCCGTGCTGCTCTGCAActcctcccccacccccacgGAGAAACATGGCAGCTCAGACACCAAGTGTCCTCTGACGGTGAAAATCCTGGATGCGGTGAAAGGGACTCCAGCTGGATCTGTGGCCCTCAAGGTGTTTCAGAAGGCTGCCGATGGGGCGTGGACGCAGATCGCTAATGGAGTGACGGACGACACTGGAGAGAGCCACAATCTGATCACGGAGCAGCAGTTCTCAGCAGGAGTGTATCGGGTTGAGTTTGATACCAAAAGTTACTGGAAGAATGAGGGTAGCACGCCATTCCATGAAGCAGCTGATgTGGTGTTTGAGGCCCATGCTGAGGGTCATCGTCACTACACCTTGGCCCTGCTGCTCAGCCCGTACTCCTACAGCACCACAGCCGTGGTGACCGACACACACCAGTGATACACATCGCAGCGTGGATATATATACAGTCTGCTGGAGACATCAGTGAGCTGCATTAAGGCTGgacatcatttgtttttttgttcttgtgCTGAAAACCAAACCAAATGAATGCATTATGTATCTATGTGTTGTGCATGTATCCAAAGCCTGATGTATCTTCTTCCTCTGAGCCATAAAACCCATCAccgagccacactgttgcactggctgACGTGTTACTTcatcaccatgaacacacacattgttaCTTCCCTTGGATGTTTGATCTTCACTTTGAATAGTGTAGGAGACATCTTGCATCCAACTTTTTGAAATAAAGAACATTagcattttctgga

Function

symbol description
ttr Predicted to enable hormone activity and thyroid hormone binding activity. Predicted to be involved in purine nucleobase metabolic process. Predicted to act upstream of or within retinol metabolic process and thyroid hormone transport. Predicted to be located in extracellular region. Is expressed in liver. Human ortholog(s) of this gene implicated in Alzheimer's disease; amyloidosis; carpal tunnel syndrome; dystransthyretinemic hyperthyroxinemia; and transthyretin amyloidosis. Orthologous to human TTR (transthyretin).

NR:

description
transthyretin

GO: NA

KEGG:

id description
K20731 TTR; transthyretin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812313.1 True 868 mRNA 0.50 4 36343295 36349730

Neighbor

gene id symbol gene type direction distance location
LOC120565107 NA coding upstream 15917 36298542 ~ 36327378 (+)
LOC120565108 NA coding upstream 58489 36237852 ~ 36284806 (+)
LOC120565109 NA coding upstream 75480 36261939 ~ 36267815 (+)
LOC120566096 NA coding upstream 606285 35699825 ~ 35737010 (+)
ddx10 ddx10 coding upstream 664866 35673360 ~ 35678429 (+)
b4galt6 b4galt6,LOC104925469 coding downstream 2213 36351943 ~ 36373606 (+)
ctns ctns coding downstream 60138 36409868 ~ 36422475 (+)
nfic nfic,LOC102792909 coding downstream 213724 36563454 ~ 36594440 (+)
dohh dohh,LOC102789931 coding downstream 354722 36704452 ~ 36712253 (+)
rsph4a LOC104961853 coding downstream 363645 36713375 ~ 36720899 (+)
G100524 NA non-coding upstream 47802 36295138 ~ 36295493 (+)
G100523 NA non-coding upstream 51052 36292026 ~ 36292243 (+)
G100519 NA non-coding upstream 53609 36289449 ~ 36289686 (+)
G100492 NA non-coding upstream 199207 36143878 ~ 36144088 (+)
G100462 NA non-coding upstream 480968 35862007 ~ 35862327 (+)
G100535 NA non-coding downstream 73130 36422860 ~ 36423129 (+)
G100536 NA non-coding downstream 74862 36424592 ~ 36449148 (+)
G100557 NA non-coding downstream 109791 36459521 ~ 36461470 (+)
G100566 NA non-coding downstream 119798 36469528 ~ 36542174 (+)
G100537 NA non-coding downstream 133556 36483286 ~ 36485692 (+)
dsg2.1 NA other upstream 108696 36215464 ~ 36234599 (+)
G100174 calr3 other upstream 1835743 34504643 ~ 34507552 (+)
G100087 NA other upstream 2464964 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 2580376 33243213 ~ 33762919 (+)
nlgn1 nlgn1,LOC102797975 other upstream 3464662 32436847 ~ 32878633 (+)
G100568 lmnb2 other downstream 123808 36473538 ~ 36475195 (+)
smim24 NA other downstream 145754 36495484 ~ 36534582 (+)
sass6 sass6,LOC102776185 other downstream 246311 36596041 ~ 36611746 (+)
G100671 NA other downstream 345707 36695437 ~ 36698869 (+)
prrc2c NA other downstream 582925 36932655 ~ 36958360 (+)

Expression


Co-expression Network