lmo4b (lmo4)



Basic Information


Item Value
gene id lmo4b
gene name lmo4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29422379 ~ 29436496 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039812314.1
TGGAGGTTTTTTCCTGTCAGCGACACATGTAGAACAAGCAGCTAACGGGACCCAGAGAGCAGACCGGAGGACAGTCAATCATAGCCTATGTGCCAGCCTCGTTAtttcttttccctttcttttgcCAAAACACGCACTTCTCGGTCTGAGGACATCACGGCACGCGTAGACCTGTAATTACGCCTTGCAATGGACTCCTTCTGTTCCAGCGAAAAAAAGAACACTAAAGCAGCAACAGTAAAACGGGAACCATCCAGTGGAAATACTATCTGATAACTCCATTTGCTCGGCACTCCGCTTGTTGCCAGTGAACATCCGAGCTCAAGTCCTCACTGTCCTCACTGTCGCGCGGAGCTGGAGGCCGACCGCGCGCGATACTGTATCGCTTTTTACCTGTACTTTTTGGGACTGTTATAGCCTGCCTGTTTACCTGCATACCCAGCAAGTCATTAACTTTACAACCATTACTCTTAAACGAGACAAACGAGggACAATGGTGAATCCCGGAGGCAGCAGCCAGCCACCACCCGTGGGCACAGGTTCTCTGTCCTGGAAGCGGTGTGCAGGGTGCGGGGGCAAAATCGCAGACCGTTTCCTCCTTTACACCATGGACAGCTACTGGCACAGCCGATGCCTCAAGTGCTCATGCTGCCAGGCCCAGCTGGGCGAAATCGGCACGTCGTGCTACACAAAAAGCGGCATGATCCTCTGTAGAAACGACTATATCAGATTATTTGGGAACAGTGGAGCTTGCAGCGCTTGTGGTCAGTCCATTCCAGCCAGTGAACTGGTGATGAGGGCACAGGGCAATGTGTACCACCTCAAGTGTTTCACTTGTTCCACCTGCCGGAACCGGCTCAATCCCGGGGATCGGTTTCACTACATCAACGGCAGCCTGTTCTGCGAACACGACAGACCCACAGCACTCATCAACGGCCATTTGAGTTCGCTGCAGACGAACCCACTACTGCCCGACCAGAAGGTGTGTTAGACGGGGAGCCATGCAGGAAGCAGGATGTGTGCCTTCATTTAAGCCCTTACTCATTGTCACCCAAGACAGCGTGGATCAGCAGCACCCCCAGGCCCTTTGCCCCCAAAGGAACCCTCTACCCATCTTAACCAGTTACCTGACCTTTTATTTCTGCTAACCCATACCCAAAAACGCTCAGCCTTCAACCTTGGCTTTTCCCCAAATATGGGCGGATACTTGCACTTAATGCACCTGTTACGGGACGCTGAGGACTCCATAACccttggaataaaaaaaataaaaaaataaaataaaaaaagagactgaTCAGAATCCAAGGGGACTCTTGAGGAAGAGAAAATTAAGTAACACACAAGAGGATGTTGTGACTGAAGTgaggggaagagaaaaaaaagactaatgATGTTAAAGAGATGCAGGCTTTTCAACTCTGCATATTTGGtttcaagacatttttagggGAAAAACCTGGgactttttgattttttttttttttttgctttcttccttttctatcctCATTTCCCAACAACATGGTGTTTccactttatatattttaagtgTTGTCGAAggggaatgtttttttctttttctttgatggTATATATAGAAAAAGAtggggttttaaaaaaaagaagaaaaaaaaaaatctgtggcTTTTTGTGGAAAACAAATCATGAACACTCTCTTGGTGTATTTGTAAAACTaccatgtatgtacagtatgcatgtAAATGTCGTTGTCGAGGCGTGGCTACAGTACATCTGGTCCTCACCCCTCCCCTCTCCAAACCTAAAAGGATGGCAAACGGAAAGAAACTTGCTCATAGTTAGTAATGTagagatcatcatcatcaacatatAAATGCTGAATGAAA

Function


symbol description
lmo4 Predicted to enable metal ion binding activity. Predicted to be involved in neural tube closure; positive regulation of kinase activity; and regulation of cell migration. Predicted to act upstream of or within several processes, including cell differentiation in spinal cord; thymus development; and ventricular septum development. Predicted to be located in cell leading edge and nucleus. Predicted to be part of transcription regulator complex.

NR:

description
LIM domain transcription factor LMO4

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24099 LMO4; LIM domain transcription factor LMO4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039812314.1 True 1868 mRNA 0.46 5 29422379 29436496
Loading

Neighbor


gene id symbol gene type direction distance location
hs2st1b LOC103365674,LOC100712187 coding upstream 48913 29352402 ~ 29373466 (+)
LOC120565897 cldn18 coding upstream 90601 29326517 ~ 29331778 (+)
sox14 sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 coding upstream 153943 29266362 ~ 29268436 (+)
hdlbpa hdlbp coding upstream 357277 29042904 ~ 29065102 (+)
dtymk dtymk coding upstream 455796 28959154 ~ 28966583 (+)
lrrc8c lrrc8c coding downstream 305897 29742393 ~ 29755409 (+)
lrrc8db LOC102192663,LOC101487848,LOC104931916,LOC103368774 coding downstream 327173 29763669 ~ 29772684 (+)
brdt NA coding downstream 765036 30201532 ~ 30244918 (+)
ephx4 ephx4 coding downstream 809308 30245804 ~ 30261307 (+)
btbd8 kiaa1107,LOC103368715 coding downstream 826481 30262977 ~ 30311025 (+)
G99238 NA non-coding upstream 265272 29156684 ~ 29157107 (+)
G99217 NA non-coding upstream 387973 29019535 ~ 29034406 (+)
LOC120566147 NA non-coding upstream 429769 28992228 ~ 28992610 (+)
G99189 NA non-coding upstream 450293 28970487 ~ 28972086 (+)
G99108 NA non-coding upstream 734261 28687882 ~ 28688118 (+)
G99261 NA non-coding downstream 1666 29438162 ~ 29438722 (+)
G99292 NA non-coding downstream 156869 29593365 ~ 29593623 (+)
G99299 NA non-coding downstream 259111 29695607 ~ 29695933 (+)
G99327 NA non-coding downstream 323547 29760043 ~ 29760366 (+)
G99329 NA non-coding downstream 337821 29774317 ~ 29775080 (+)
ralgps2 ralgps2 other upstream 556892 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 647826 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 1276054 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 1337992 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 1589524 27659696 ~ 27832855 (+)
G99297 NA other downstream 227137 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 991007 30427503 ~ 30429291 (+)
G99545 NA other downstream 1374022 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 1659385 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 2177393 31613889 ~ 31643446 (+)

Expression


lmo4b(lmo4) Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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lmo4b(lmo4) Expression in each Bioproject

Bar chart with 8 bars.
lmo4b(lmo4) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.

Co-expression Network