Item | Value |
---|---|
gene id | lmo4b |
gene name | lmo4 |
gene type | coding |
species | eurasian perch (Perca fluviatilis) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_053120.1 |
NCBI id | CM020917.1 |
chromosome length | 41568296 |
location | 29422379 ~ 29436496 (+) |
genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
symbol | description |
---|---|
lmo4 | Predicted to enable metal ion binding activity. Predicted to be involved in neural tube closure; positive regulation of kinase activity; and regulation of cell migration. Predicted to act upstream of or within several processes, including cell differentiation in spinal cord; thymus development; and ventricular septum development. Predicted to be located in cell leading edge and nucleus. Predicted to be part of transcription regulator complex. |
description |
---|
LIM domain transcription factor LMO4 |
id | name | namespace |
---|---|---|
GO:0008270 | zinc ion binding | molecular_function |
id | description |
---|---|
K24099 | LMO4; LIM domain transcription factor LMO4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_039812314.1 | True | 1868 | mRNA | 0.46 | 5 | 29422379 | 29436496 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
hs2st1b | LOC103365674,LOC100712187 | coding | upstream | 48913 | 29352402 ~ 29373466 (+) |
LOC120565897 | cldn18 | coding | upstream | 90601 | 29326517 ~ 29331778 (+) |
sox14 | sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 | coding | upstream | 153943 | 29266362 ~ 29268436 (+) |
hdlbpa | hdlbp | coding | upstream | 357277 | 29042904 ~ 29065102 (+) |
dtymk | dtymk | coding | upstream | 455796 | 28959154 ~ 28966583 (+) |
lrrc8c | lrrc8c | coding | downstream | 305897 | 29742393 ~ 29755409 (+) |
lrrc8db | LOC102192663,LOC101487848,LOC104931916,LOC103368774 | coding | downstream | 327173 | 29763669 ~ 29772684 (+) |
brdt | NA | coding | downstream | 765036 | 30201532 ~ 30244918 (+) |
ephx4 | ephx4 | coding | downstream | 809308 | 30245804 ~ 30261307 (+) |
btbd8 | kiaa1107,LOC103368715 | coding | downstream | 826481 | 30262977 ~ 30311025 (+) |
G99238 | NA | non-coding | upstream | 265272 | 29156684 ~ 29157107 (+) |
G99217 | NA | non-coding | upstream | 387973 | 29019535 ~ 29034406 (+) |
LOC120566147 | NA | non-coding | upstream | 429769 | 28992228 ~ 28992610 (+) |
G99189 | NA | non-coding | upstream | 450293 | 28970487 ~ 28972086 (+) |
G99108 | NA | non-coding | upstream | 734261 | 28687882 ~ 28688118 (+) |
G99261 | NA | non-coding | downstream | 1666 | 29438162 ~ 29438722 (+) |
G99292 | NA | non-coding | downstream | 156869 | 29593365 ~ 29593623 (+) |
G99299 | NA | non-coding | downstream | 259111 | 29695607 ~ 29695933 (+) |
G99327 | NA | non-coding | downstream | 323547 | 29760043 ~ 29760366 (+) |
G99329 | NA | non-coding | downstream | 337821 | 29774317 ~ 29775080 (+) |
ralgps2 | ralgps2 | other | upstream | 556892 | 28775375 ~ 28865487 (+) |
LOC120565530 | LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 | other | upstream | 647826 | 28772362 ~ 28774553 (+) |
LOC120564865 | NA | other | upstream | 1276054 | 28137269 ~ 28146325 (+) |
pip5k1ca | pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 | other | upstream | 1337992 | 28027964 ~ 28084387 (+) |
ncanb | ncan,LOC104966594,LOC107554802 | other | upstream | 1589524 | 27659696 ~ 27832855 (+) |
G99297 | NA | other | downstream | 227137 | 29663633 ~ 29665090 (+) |
si:ch73-389b16.1 | ccdc18 | other | downstream | 991007 | 30427503 ~ 30429291 (+) |
G99545 | NA | other | downstream | 1374022 | 30810518 ~ 30811236 (+) |
slc1a7b | LOC103368436,LOC102788729,LOC102303821 | other | downstream | 1659385 | 31095881 ~ 31302827 (+) |
LOC120564930 | NA | other | downstream | 2177393 | 31613889 ~ 31643446 (+) |