LOC120566075 (LOC101470345,LOC102300495,LOC102205443,LOC103370586)


Basic Information

Item Value
gene id LOC120566075
gene name LOC101470345,LOC102300495,LOC102205443,LOC103370586
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11311738 ~ 11356871 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812317.1
CCAAAGCCTGGAAAGAGGGGTTTTACAGGACAGTTCTCCTCCTGTCTGAAACCTCATTTTTAAACAACGGATTTAGCTCTTGTGTTGCCTTTTAAACCGGCTGATTTCCATAATCATGAACGGGTAGTCTGCGCGTGGATCTACGCCGACTTTTACTGACCGACACCTGCACACTCTCtatctctcctttcctctcttttgtCTCTGACATCTCTGCAGCTCCCAGCCAGCAGCGCTGGAAGAGGAGGGGGTGTACCTGACACCTACAGCCGCGCGTCGCAGCTCTCCTTCCCCCGCAGAAACACCCAGCAGGACTCGCCCGCCACGGGTGCCTCCTTCCATCGCCAGGTTGTCCGTGTGCAGTTTCAACAGGGAGGGGGGGAACACGGCTTCTGCTGACGGACTGAAAActctttaaaaatatataaaaaaaaaaattaaaatagcaACAACACATTGAAGACAGGGGGGCTTCGAAGAACTCCTGCTTGATTCACTCGGACCAGAAATCTTTAGGATTTTCTGACTTGACTGTAAGAAAGAAAAGGGACTACAATTGAGAAGATGCGTCCCCcggtgtttctctgtgtgttgctgtgtctgtgtgcagcgCCGGGCCCGGTGGCCGGGGCGGACCGGAGCTGCTCCGACCTGCGGCAGTTCTACACCGGGAAAGGGTTCACTCTGGTAGAGGTCCCTCAGACAGAGATCTCCGGTGAACATTTGAGGATGTGTCCTCAGGGTCCAACTTGTTGTACCAGTACCATGGAGGAGAACCTGGGAGGTCTGAGTGCTCGAGAGACCGAGGGACTGATCAGAGAAGCCGGCAGGTCGCTGCAGTCTGCCTTCAACGCTCTCCACAGGAGCTTCGACACATATTTCACTGAGCTGCACGGTCGCTCTGAGCGCTCCCTCCCGGAGGCGCTGTCTCCTCTCGGCGCCCTGTACTCACAGAACACCCGTCTCTACGGAGATCTCTACACCGACCTGCGACAGTACTACCGAGGCTCCGCTCTCAACCTGGACGAGACCCTGTCTGAGTTCTGGTCCCGCCTCCTGGAGCGCACCTTTAAAATCTCCGCTCCCACAGAgGTCAACCTGTCAGAGGACTACCTCGAATGTGTTGCTAAGCAACAGGAGACGCTGCGGCCATTTGGAGACGTCCCAAGGGACATGAAGGCGAAGCTGATCCGCGCTTTTGTCACAGCCAGGTCGTTTGTCCAGGGGCTGATTGTCAGCGGAGAGGTGGTCAGGAAGGTCTcacagGTTCATTTGAGTCCAGAGTGTATGAAGGCCCTGATGAAGCTGGTTTACTGCCCCCACTGTCACGGCATTGCCTCCGTCAAACCATGCTCCAACTACTGTTCCAACGTCATGAAGGGCTGCCTGGCCAACCAAGCTGACCTGGACCCCGAGTGGCAGAATATTATAGACACCATGATCCAGGTGGCCTCTAGTTTCAGCACGGAGCCCAGTCTCGATGTAGTTCTCTCCTCTATCCCTGCTCGAATCTATGAGGCTGTTCACTTCCTGCAGGAAAACATGGACACATTCACAGCAAAAGTGTACCAGACATGTGGTACTCCAGGTGAACCAGGAACAGGAAGTCCCAAACTTCATGAGCAAAGGAAGAAGAGCGGCTCCCTAACCGCATCAGAGTACAAACCCTCTCCAACTGCTGGGCTCAGACTGGAGATGCAgGTTTCAGATCTGTCAAGTAAGCTGAGGGAGATGCGGCAGTACTGGACCCAGCTTCCTGTGGCACTTTGCAGCAAACTGGCAGCAGGAGGCGCCGGTCAGGATAAATGCTGGAATGGCATTACAAAAGCTAGGTACCTTCCAGAGGTGATGGGTGATGGCTTGGCCAATCAGATCAATAACCCAGAAGTAGAGCTTGACATCACAAAGCCAGACATGACCATCAGGCAACAGATCATGCAACTCAAAATCATGAGCAACAGGCTGAAAAACGCACTGGAGGGCAACGATGTGGACTTCCAGGATGCGAGTGACGACATTAGCGGCTCAGGAAGCGGGATGTGCGTAGGTGGTCTGTGTCCTCGGAACAGACCGGGATTGTATGCCTACTCGCCAGACAACAACCGAGTCAGAGGCACAGCCACGTCTCAAACACGCATCTGTGGCCTCCTACTCCTGCTCCCACTGACCATCCTGCTGCTTCAGCGATGATGGACCGCAGCTGCCTCAAATCAGACTCTAAGTCTAGAGGAGGGCTGAACCACGCGACGGACAAAAAGGGGTTTGGTGGGGGGGGAAAGATTGGAAGGTAAATTtgccaaaaaatgaaaaagacatCTTGGGGGAATTAATGGACGACATTTTATTTGACCAAGAGGAGCAAAATTGACAGTGACAATATTCTTTATTTAGTTTTGCTCAGTTTTAATGTGTCTTAGTTTGGGTGTGATTCAGTTTGTTGAGCTGGTTTCAATGGATTGTTAGAAGAAGACGGAGATGAGGAAggcgaagaagaagagaatGATGGCTGTTGATGATGAAAATAATGATGGGGATATTGACAATGATTTATTGACACTTTAGCAGATCCATTTAGCTCCAGGTTCCAGTTAGCAGGCGGCAGAgctcagtgaaaaaaaaagtttggttcCCTGATATGTGGTGCGTTCAACaaggcttttttttcttatttttttaactggaGTCGAGGTTGACTACCTTAACAAACATTGTGTAAGTTGTAAATGTTTGTGTACATTAGCTTAAAGACTGGCACCATATTGAGCCATGAATGTACAGTGTAATACTATATTGGCAATGAATCTCCCCATAATCTGGGATGTAGTCGTGTGTTGGCATAAATGGATACATTCAGTAggatttgtttaaaatattgCAGATAAATTATCACACATTGTCGTATGAGATGTTGTGATTGCAAGATTTTACCTCACTTTTACTGTATACCCTACCATTTCCAAGGAAAAGGGAAATGACCACCTTTTTAACAACTCATCACCTTAAGAAAACAAGCAGTGTCATCAAAGCACTTGTAAACAAGCACAGACAAGCAGTTTCCTTAAATCCTGTAATTTATCCTGCAGTGAAGACAGAAAACTGCACATTATTCTTACACTTATGGTTGCAATAACCACAAAAATCTCCACAGAGAACATTTCATGACACAGTAATTTTTAGAGAGGACTCCTTGTTGAACGCACACCTGCGTTTAGTAACTTTAAATTGAGTCTTAGAAGCAACACAGTGGCTGATATACAGTAGGTCAAACCAAAGCACTTATTAcactgaaattttttttttcttttacattttttaacagcAGACATCGCCCAGAGTATGTTTAACATTTGTGATGACCCTTGTGCCAGGTTTTGTAActgcatatttaaacaaaaaaaagcatcagtaagaaaaaaaaggtcttgTGCATACAGTACAGGATATGTGCAGAATATTGACAACATGTATACATTTACCTGGTGATACATACTGTAATTTACTCGGCATGCCTTTCTTTCAGTCTACACTACTATACTGATACATATGGGACCCCTGATTCACATAAGtctcttgcacacacacatttacacacactggGGTTGTGTATTAAGCTGATTTTTATTCATCAGTGTATTTAATCAGACATTTCATTCATTAAACGCTGTTTGATTGTGGCAGTGGATTTTGCCATGCACAATTTCATTTGGGTATTGCTGATTAGCATCCATTAACAAGAAGCTAGATCTTTATTTAAAGGGACACtccaccaattttacacatcaaagtcaAAATTGTATTAAAgtcctctgtggctctggatGGAGCTTTCTAATGTTTGAGGAAAATAAGCCTGAGGATgtcatagtgatgtcatcagcTTGGTCTTGGAGGCTAGAACTTTATAACAGACAAAAACTGGGGGCATCAGGTTTGAAAGACGTGGGTGTTTACCAGGCAGGGAGGATCAAACAAAATGATGAGAGTTACGGCAAATATAGGATCTAGTGTTTACGGAGCTTGACCCATTATtagggactaaaagtcaggatatctctaGGGATGGCAATCTCGGTCTGTCTGTTGGACCACCactttgatccagactgaaatatctcaactatcTATCAGATGGATTGCCATGTTCCCTGCAGGATTCATTCGTATCACTTTGGTGATTGCTTACCTGTTCATCTGGtgcatcaggtcaaaattttaaTGTGTCTAATACTtgggtttatgaccaaatacctgctaaactaatgacattcccatcagcctcagctgtacgtAAAGTAAAGGTAAACTAAAAtgatgaacatggtaaacattccACCTGCTTGGCATCATTCAGTATGTTAGCATCGTCATTGCAAGCATGTTATTTTGCTGATGTTCTCcattagctcaaagcaccactgtgccgaAGTACTCACAGAACCACCAGCATAGACTCTTGTTTAAAAGTCTCTTGCAAGTCCCCCCGAACTTTATGGAAGCGCAAAACTAAATCACTGGAGTACCCCTTTAAGGCCTCTATGTTCCTCTCATTGTGAAGGCTGATACAACTTTACAAACATGTACTTTATCTAAGAATCTATCCATTAGCCATAGAGATATGACCAAGCACCAGTTGATCTCGTCTTCACAATGTCTGTTCCTGATGCTCTGTGGCCCGTGGATTTAGTCACGACTCAGTCCCTGACTTTGCTCGTTTTCTAGAAAAACTCAACTTGCCAGCTGCACGACAGCTATTTATAAACATATAACTCTTTGTTACAGGCACTGACAAGCCTCATGTGGCCCTGCTGGAGAAAAACGGGGCCACGTGTTGTGTGTGGGGATGACAATCCTGCACCAGTCAGGGGGTTTCGAGTTaatgaatgatttattttcCTGATGCATACAACAGAATAAAGCAGAGCAGCAGGCACATACACAAAGAGTTCACTACACATTTCTGTCTTTGAATGCTGGAAAGgtcttaaatgttttatttctcaacATCAGTATCTTTGATTAAGAGGACCCGATCTGAACATCCATCTGAattcacccttttttttttttttgcatctcctgaaatgtgtctttttctgTAATTGTGAATGATGTGGAAGTAAAGGTAGAGTCTGAGTTTTACTGAGATGTGGGAGGACACGTGTAGCAGCCACAGTCTACAACACTGTTGATTTGACTTTGTCTAGACATGAGGAAGATTTATCGACTCTCAGCACTCTGAGCTGATGAGCTGTCTGTCCATGACCAACATTTTGAGTCCCCCAGGTGAGAGTTACCTTTGAACAAAAGGTGCCACAACTCTTGCTGAACAAATATAAGAAATGTAACTTAACTCTGGAGACAGCTTAAACTTAATTGTTCTGCTCATGTGGCAGCTTGCAGGTCTAGAATCGATTTTTGGGTCTCCATCTgtggtttaaaaagaaatagaCTCAGTGCTAATGTGTTTTCTTGTAGACGTGGCTAATTTTCTTAACCAATTTCAAATGCCTCCAACTGCTGGCTCTAAGATAAGAAGCATCTCCCGCTCTTTGTCTGCTTTTcacttacacacagacatacatacaactCTTTAAGATACTGGTCAATGTGTACAAGGATGCAATAGCCACTGAATAAAGGTGATTGTTGTCGTGGTA

Function

NR:

description
glypican-1

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812317.1 True 5657 mRNA 0.45 10 11311738 11356871

Neighbor

gene id symbol gene type direction distance location
LOC120565497 LOC103370597 coding upstream 7645 11248434 ~ 11304093 (+)
trnam-cau_8 NA coding upstream 63091 11248575 ~ 11248647 (+)
ccdc17 NA coding upstream 73837 11222522 ~ 11237901 (+)
LOC120565506 NA coding upstream 204540 11105141 ~ 11107198 (+)
LOC120566056 LOC103374891,LOC100702684,LOC101467020,LOC102305063 coding upstream 551809 10748929 ~ 10759929 (+)
LOC120565022 NA coding downstream 116485 11473356 ~ 11490038 (+)
si:ch211-262h13.5 NA coding downstream 158087 11514958 ~ 11523948 (+)
LOC120566036 LOC104946463 coding downstream 168599 11525470 ~ 11549098 (+)
dnai3 wdr63 coding downstream 199486 11556357 ~ 11576634 (+)
LOC120565976 col24a1 coding downstream 327491 11684362 ~ 11786933 (+)
G94706 NA non-coding upstream 71501 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 116808 11194647 ~ 11194930 (+)
G94690 NA non-coding upstream 135521 11176004 ~ 11176217 (+)
G94688 LOC104952604 non-coding upstream 184718 11126756 ~ 11127020 (+)
G94687 lrrc7,LOC103129487 non-coding upstream 190054 11121469 ~ 11121684 (+)
G94747 NA non-coding downstream 219917 11576788 ~ 11577261 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding downstream 294651 11651522 ~ 11659072 (+)
G94813 NA non-coding downstream 559760 11916631 ~ 11920037 (+)
G94997 NA non-coding downstream 1509041 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 1638364 12995235 ~ 12995654 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 363422 10946932 ~ 10948316 (+)
G94598 NA other upstream 370494 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 896912 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 1151857 9985719 ~ 10159881 (+)
ttc14 ttc14 other upstream 1363501 9933613 ~ 9948237 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 2819 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 432264 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 804767 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 1385934 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1648697 13005568 ~ 13100445 (+)

Expression


Co-expression Network