magoh (magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138)


Basic Information

Item Value
gene id magoh
gene name magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30832801 ~ 30836627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812380.1
CCCTCTACGCATGCGTATATTGATGGCGAGACACTTCACTAGCTTTTCTTGCTAGCTGAGTTTTGTTACGCAGACTTCACTAGAAAGAGTACTTTCTGGAGAGTAAAGATGTCAACAAGTGACTTCTATTTGAGATATTATGTTGGGCACAAGGGAAAGTTTGGACACGAGTTCCTGGAATTTGAATTCAGACCTGACGgtaAACTGAGGTACGCAAACAACAGCAACTACAAGAATGACGTCATGATCAGGAAAGAGGCATATGTACACAAAAGTGtgatggaggagctgaagagaATCATTGATGACAGTGAGATCACCAAGGAAGATGATGCTCTGTGGCCGCCTCCTGACAGAGTTGGCAGACAGGAATTGGAGATCGTCATCGGAGACGAGCACATTTCATTCACAACCTCCAAAATTGGCTCTTTGATTGACGTCAACCAGTCAAAGGACCCTGAAGGTCTTCGGGTGTTCTACTACCTGGTGCAAGATCTGAAATGCCTGGTCTTCAGTCTCATTGGCCTACACTTCAAGATCAAGCCTATCTAAATGTGGAATTTGattgttttaattgctttagcTAATGTTTCTGTTGTAGTACCGCATTTGTACATTTGCTTTTGGTGGAactgtttattttaaataaaagggTCAGAAAAATGTA

Function

symbol description
magoh Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in cytoplasm and nuclear speck. Predicted to be part of catalytic step 2 spliceosome and exon-exon junction complex. Is expressed in oocyte; oocyte stage I; oocyte stage II; oocyte stage III; and oocyte stage IV. Orthologous to human MAGOHB (mago homolog B, exon junction complex subunit) and MAGOH (mago homolog, exon junction complex subunit).

NR:

description
PREDICTED: protein mago nashi homolog

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006417 regulation of translation biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0051028 mRNA transport biological_process
GO:0016607 nuclear speck cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12877 MAGOH; protein mago nashi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812380.1 True 667 mRNA 0.42 5 30832801 30836627

Neighbor

gene id symbol gene type direction distance location
uck2a uck2,LOC100698935,LOC102786757 coding upstream 3530 30824223 ~ 30829271 (+)
LOC120566104 pbx1,LOC104964292,LOC108272157,LOC103479586 coding upstream 37972 30727013 ~ 30794829 (+)
sec16b LOC104942848 coding upstream 273647 30541357 ~ 30559154 (+)
gng12b NA coding upstream 296928 30529968 ~ 30535873 (+)
LOC120565046 LOC103368800,LOC102778977,LOC102199240,LOC101469842,LOC100700999 coding upstream 346979 30481514 ~ 30485822 (+)
akr1a1b akr1a1,LOC102789595 coding downstream 97281 30933908 ~ 30945625 (+)
uhmk1 uhmk1 coding downstream 567146 31403773 ~ 31513916 (+)
mcf2l2 NA coding downstream 946599 31783226 ~ 32159445 (+)
ect2 ect2,LOC102798372 coding downstream 1384406 32221033 ~ 32411447 (+)
si:ch211-51h4.2 LOC102206538,LOC102309665,LOC102076398 coding downstream 2935819 33772446 ~ 33875096 (+)
G99530 NA non-coding upstream 111941 30720621 ~ 30720860 (+)
G99528 NA non-coding upstream 138796 30693639 ~ 30694005 (+)
G99527 NA non-coding upstream 152085 30680506 ~ 30680716 (+)
G99494 NA non-coding upstream 302981 30529609 ~ 30529820 (+)
G99493 NA non-coding upstream 303713 30528826 ~ 30529088 (+)
G99567 NA non-coding downstream 28273 30864900 ~ 30866452 (+)
G99573 NA non-coding downstream 32362 30868989 ~ 30869251 (+)
G99576 NA non-coding downstream 45751 30882378 ~ 30883266 (+)
G99577 NA non-coding downstream 47637 30884264 ~ 30885185 (+)
G99578 NA non-coding downstream 49058 30885685 ~ 30885971 (+)
G99545 NA other upstream 21565 30810518 ~ 30811236 (+)
si:ch73-389b16.1 ccdc18 other upstream 403510 30427503 ~ 30429291 (+)
G99297 NA other upstream 1167711 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 1967314 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 2058248 28772362 ~ 28774553 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 259254 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 777262 31613889 ~ 31643446 (+)
G99791 NA other downstream 786071 31622698 ~ 31625796 (+)
G99803 NA other downstream 793189 31629816 ~ 31631501 (+)
LOC120565823 NA other downstream 925365 31761992 ~ 31767539 (+)

Expression


Co-expression Network