lingo3a (lingo3,LOC102210007,LOC101476815,LOC102795762)


Basic Information

Item Value
gene id lingo3a
gene name lingo3,LOC102210007,LOC101476815,LOC102795762
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26097785 ~ 26135163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812389.1
acgcacacactcatcTGGTGGTCCACTTGATGTGCTGtctgacacacttttacacaccAAAGAGAGATCATGCACATGGGGTGTCTGACGCAGTGATTCAGGAGCGGGACGAACCAGTGAAAAGGAGAGCCATGGGGGTGAGCCTGGGCCAGGATGTAGGCTGGCTCCTGCCTTTCCTGTTCTTGCTACTGATGGTCACAGTGTTACCCACGCAGGGTCAAGGATGTCCACAGCGTTGTGAGTGCATTTCAAAACTCAAGACTGTGTCCTGTTATGGTAGACGCCTGTCAGCACTGCCAGATGGCATCCCACTGGACACCAAGACCCTGGACCTAAGTGGGAATAAACTTCGCTGGGTAGAGCATGGGGACCTTCTTCCATATTCACGTCTTGAAAAGCTGGACCTGAGTGAGAACATTATCAGTGTCCTGGAACCGAATGCTTTTTCTAGTCTCCAGAACCTGCAGTCGCTTTCACTGAGGGGTAATCAATTGAAACTGGTCCCCATGGGGGCTTTCTCACGTCTCTCCAATCTAACCTCATTGGACCTCAGTGGGAATAAGATTGTAATTCTTTTGGACTTCACCTTCCAAGACCTGAAAAGTCTGAAAAACCTGGAAGTTGGAGACAATGATTTAGTTTATATTTCCAACAAGGCCTTTCTGGGTCTGGTTGGGTTGAGGGAGCTGACCATTGAGAGGTGCAACCTGACTTCTGTGTCCAGCCAGTCTTTGTCTTACCTGCATAACCTGGTGGCTCTGCATCTCCGCTACCTCAGTATCTCCACCTTAGAGGACCAGAACTTCCGTAAGCTGGGAAACCTGAGGGGCCTCGAGATCGATCACTGGCCCTTTTTGGAGCACATTTCCCCTCACAGCCTGCAGGGTCTAAACTTGTCTTGGCTGTCGATTACTCACACTAACATCACCTCTGTGCCCACCTCTGCCCTACGCAGTCTGGCTCACCTCACCAGCCTCAACCTCTCCTACAACCCTATCTCTGTGTTGGAGTCCTGGGCGCTGCGGGACCTTGTAAGGCTGAAGGAGCTGCATCTGGTCAACACAAATCTGGTGGCAGTGCAGCCGTATGCGTTGGGTGGCCTAAGGCAAATCAGCCTCCTTAACCTCTCCACTAACGGCCTGGTGTCCCTGGAAGAGGGAGCGTTTCAGTCTGTCAACACTCTGGAGACGCTGCGTTTGGACGGGAACCCTCTGGCCTGCGATTGCCGCTTGCTGTGGATCCTTCAGCGCAGGAAGACCCTCAATTTCGAAAGCGCCTCCCCAGTGTGTATGACACCCGTCGAGGTGCAGGGACGGGCTCTGAACGCTTTCTCTGACTCAGCTCTCTTTGATCACTTTACTTGCCAGAAGCCCAAAATCCGCAACAGGAAGCTACAGCAGGTAACTGCCCGCGAGGGGCAGGTTGTGTCATTCATTTGCAAAGCAGAAGGTGAGCCGACACCGGTGATATTCTGGATCTCTCCTCAACGCCGCCGCATCACAACAAAGAGTAGCGGCCGCCTAACTGTGTTACCAGAGGGCACATTAGAAATACGGTACGCCCAGGTAACAGACAGTGGAACCTACATCTGCATAGCCAGCAATGCTGGTGGAAATGACACCTATTTTGCCACGCTTACAGTCAGTGGGCTGCCACTAGATGCAGCCCTAATGGCAAACCGCACGTACTATGCTGGGGACCTTAATGACACAAATCTGAACGACACCAGAGTCTTCCTTAAGTTTACACTGGACCTCAAGACCATCCTTATATCCACAGCTATGGGCTGTATCATGTTCCTGGGGGTGGTTCTCTTCTGTTTCATTCTGCTCTTTGTGTGGAGTCGAGGGAGAGGGCAGCACAAGAACAATTTCTCAGTGGAGTATTCCTTCAGAAAGGTGGATGGACCCGCTGCCAGTGGAGGACAGGGTGGGGCTCGCAAGTTCAACATGAAAATGATTTGATTATTTGGATCTGTTTCTCTCATTGGTATTCTTTCCCTGATACTGTTTACAAGCAGTCAAACGCTAAAGGCACAGGAAACTGGAGTGGACCTTTGTGCTTGCAAAACATTAAATGCAGTTATTTATAGGAGGACATTTTATTGAGACAAGGTTTTGTTATCGAAACTACTATATATATGAGAAAAGGGAAATCTGCATGGatttgatatatttatattacttTGTTGTGTGTTCACATTATTGTGCAGTGGGAACCTGGATTATAAAGGTATAAAGATGTCTCCAAGTCTTGAATAAACTGTTAAAAGACCAAGCAACAAAATCACTCAGAGTCCCACCAGTCTTTAACCTTGACAAATCTCTTGCCAACTCCATCCTTCTTCCCTACAAGGAACTCTGTCCTCTTCATCTTTGAAGGACTTCACCTCTCTGCTCCATCTGAGGTGATTCAATCTCCAAACTCATGAATACATTATACCAGCGTGGTGCTCAATGAATGCCAAGGACTTGCCAATATGTATTTGAATAGCTCCAGCTATATACTGCATATTTAGACGTATTTACAGTCAGGACTTTAGAGCACTATTGTGACAAAAATATAGAggctttgctgttttttttgctgatgGTGGGTTTATACAGAATACGTTAGACACCAAGAGACACTGCAACACTGCCAATTTGACCGTAAAGCACCATGTAATATCAATGCAATGCTGTGGTAGAGAGAAGTGACTTCTCATTGGATACCACTACAAGTTGATCAAAGCcgttttaaacaaaaacaggacTCTACATGTTAAGCTACACTTAAAGGACCCAATGCACATTCGTGTGGTGACAAATCAGTACATGTGGATGCACAATTAGGTTTTCCATTGGTTATTCAGTACATACCTTACACGACTCTCTTGATCTGAAAAGAACTGTGTGTAAAAAGATGAACGCATGTACAATGTTGGCTTCCtaatttgtattatttgtaAATTGAGCATTTGTTGGGGTGCATTCATCCCAAAGTTGAATAGATCATATTGTaggatatatactgtataagatgtattatatattttgtaaacATTGATATTGAAATGCTTGTGGTTGTTTATAGTACTGTTGAGTGATCAATCCGATCTTTCTGTTCTACTGTAATTCTATTGTTAAAGTCTCTTTTTCAAATCATTGATATCCAGTCCACCCTATCACGCATCAGATCACTGAGTTCACACAACAGATCATGAAGGGCGTTCACATCAGGTTTcagttcactttttttttttcatgttttttgctGCGTAAGTGACAGTGGAGAGGCTTAAGCTGACCAGTGGGGGAAGGAGTTAAGTGGGTTCTAGATGTATTTGAGCAGGAAAAAATGCAATTGCGATAAAGAAACTTGCAGACTGGAACAAAGGTCATAATGAAACTGAGCCAGAGAGGAGACATCACGACTATAATACAAAGGGCTGGATGCTAACTTGTAACAATATAGGCCTCCTAAGATAGCTGTATAGCATTTTGTAAAAGTTTAAGCAGAATTGGTT
>XM_039812390.1
agagagcgcgcaACAGCACACATGAGCCCTATGAACAGCAGCCGGCTCCTCTTTCAAACCAACAGACACACAGTACGCTCTacatcccacacacacaaatgccagCACTCTCATGCACATGCACTCCAATAACGAGAGCACCGTCAGTCCGAGCTGCCTGCCGCTGCCGGTGGCAGCCCTCACCGATCCCCGAGACACAACGCTGGGAGTCCGCTGGGAGAGGAGCTCCTGCTGCCTTTCTGGCACAAAGCAGAGGAGAGCGGAGAGCCAGGGACTTCATTAGCGAGGCGGTAGATAATCCAACAGCGGTGCTCTgaggagaagagacagagaggagggaaggTGAGTGAATGCAGTCCAGTtcagctgctgttgctgctgctgctgctgctactgctgctgctgctgctgctggaggaggaagaagaagaggaggaggaagaagcatATAGTGTCCGGAGAAGCTGGAGGAACAACATTATCCCGCACGGAACCACAGTCAGAGCAGACGGCCAGCATTTGATCAGAGCACCTCCAGGCGTGCAGATGTTGATGGAGTCCTGTGCAAGTTCTAGTCCTGGGTGTCTGACGCAGTGATTCAGGAGCGGGACGAACCAGTGAAAAGGAGAGCCATGGGGGTGAGCCTGGGCCAGGATGTAGGCTGGCTCCTGCCTTTCCTGTTCTTGCTACTGATGGTCACAGTGTTACCCACGCAGGGTCAAGGATGTCCACAGCGTTGTGAGTGCATTTCAAAACTCAAGACTGTGTCCTGTTATGGTAGACGCCTGTCAGCACTGCCAGATGGCATCCCACTGGACACCAAGACCCTGGACCTAAGTGGGAATAAACTTCGCTGGGTAGAGCATGGGGACCTTCTTCCATATTCACGTCTTGAAAAGCTGGACCTGAGTGAGAACATTATCAGTGTCCTGGAACCGAATGCTTTTTCTAGTCTCCAGAACCTGCAGTCGCTTTCACTGAGGGGTAATCAATTGAAACTGGTCCCCATGGGGGCTTTCTCACGTCTCTCCAATCTAACCTCATTGGACCTCAGTGGGAATAAGATTGTAATTCTTTTGGACTTCACCTTCCAAGACCTGAAAAGTCTGAAAAACCTGGAAGTTGGAGACAATGATTTAGTTTATATTTCCAACAAGGCCTTTCTGGGTCTGGTTGGGTTGAGGGAGCTGACCATTGAGAGGTGCAACCTGACTTCTGTGTCCAGCCAGTCTTTGTCTTACCTGCATAACCTGGTGGCTCTGCATCTCCGCTACCTCAGTATCTCCACCTTAGAGGACCAGAACTTCCGTAAGCTGGGAAACCTGAGGGGCCTCGAGATCGATCACTGGCCCTTTTTGGAGCACATTTCCCCTCACAGCCTGCAGGGTCTAAACTTGTCTTGGCTGTCGATTACTCACACTAACATCACCTCTGTGCCCACCTCTGCCCTACGCAGTCTGGCTCACCTCACCAGCCTCAACCTCTCCTACAACCCTATCTCTGTGTTGGAGTCCTGGGCGCTGCGGGACCTTGTAAGGCTGAAGGAGCTGCATCTGGTCAACACAAATCTGGTGGCAGTGCAGCCGTATGCGTTGGGTGGCCTAAGGCAAATCAGCCTCCTTAACCTCTCCACTAACGGCCTGGTGTCCCTGGAAGAGGGAGCGTTTCAGTCTGTCAACACTCTGGAGACGCTGCGTTTGGACGGGAACCCTCTGGCCTGCGATTGCCGCTTGCTGTGGATCCTTCAGCGCAGGAAGACCCTCAATTTCGAAAGCGCCTCCCCAGTGTGTATGACACCCGTCGAGGTGCAGGGACGGGCTCTGAACGCTTTCTCTGACTCAGCTCTCTTTGATCACTTTACTTGCCAGAAGCCCAAAATCCGCAACAGGAAGCTACAGCAGGTAACTGCCCGCGAGGGGCAGGTTGTGTCATTCATTTGCAAAGCAGAAGGTGAGCCGACACCGGTGATATTCTGGATCTCTCCTCAACGCCGCCGCATCACAACAAAGAGTAGCGGCCGCCTAACTGTGTTACCAGAGGGCACATTAGAAATACGGTACGCCCAGGTAACAGACAGTGGAACCTACATCTGCATAGCCAGCAATGCTGGTGGAAATGACACCTATTTTGCCACGCTTACAGTCAGTGGGCTGCCACTAGATGCAGCCCTAATGGCAAACCGCACGTACTATGCTGGGGACCTTAATGACACAAATCTGAACGACACCAGAGTCTTCCTTAAGTTTACACTGGACCTCAAGACCATCCTTATATCCACAGCTATGGGCTGTATCATGTTCCTGGGGGTGGTTCTCTTCTGTTTCATTCTGCTCTTTGTGTGGAGTCGAGGGAGAGGGCAGCACAAGAACAATTTCTCAGTGGAGTATTCCTTCAGAAAGGTGGATGGACCCGCTGCCAGTGGAGGACAGGGTGGGGCTCGCAAGTTCAACATGAAAATGATTTGATTATTTGGATCTGTTTCTCTCATTGGTATTCTTTCCCTGATACTGTTTACAAGCAGTCAAACGCTAAAGGCACAGGAAACTGGAGTGGACCTTTGTGCTTGCAAAACATTAAATGCAGTTATTTATAGGAGGACATTTTATTGAGACAAGGTTTTGTTATCGAAACTACTATATATATGAGAAAAGGGAAATCTGCATGGatttgatatatttatattacttTGTTGTGTGTTCACATTATTGTGCAGTGGGAACCTGGATTATAAAGGTATAAAGATGTCTCCAAGTCTTGAATAAACTGTTAAAAGACCAAGCAACAAAATCACTCAGAGTCCCACCAGTCTTTAACCTTGACAAATCTCTTGCCAACTCCATCCTTCTTCCCTACAAGGAACTCTGTCCTCTTCATCTTTGAAGGACTTCACCTCTCTGCTCCATCTGAGGTGATTCAATCTCCAAACTCATGAATACATTATACCAGCGTGGTGCTCAATGAATGCCAAGGACTTGCCAATATGTATTTGAATAGCTCCAGCTATATACTGCATATTTAGACGTATTTACAGTCAGGACTTTAGAGCACTATTGTGACAAAAATATAGAggctttgctgttttttttgctgatgGTGGGTTTATACAGAATACGTTAGACACCAAGAGACACTGCAACACTGCCAATTTGACCGTAAAGCACCATGTAATATCAATGCAATGCTGTGGTAGAGAGAAGTGACTTCTCATTGGATACCACTACAAGTTGATCAAAGCcgttttaaacaaaaacaggacTCTACATGTTAAGCTACACTTAAAGGACCCAATGCACATTCGTGTGGTGACAAATCAGTACATGTGGATGCACAATTAGGTTTTCCATTGGTTATTCAGTACATACCTTACACGACTCTCTTGATCTGAAAAGAACTGTGTGTAAAAAGATGAACGCATGTACAATGTTGGCTTCCtaatttgtattatttgtaAATTGAGCATTTGTTGGGGTGCATTCATCCCAAAGTTGAATAGATCATATTGTaggatatatactgtataagatgtattatatattttgtaaacATTGATATTGAAATGCTTGTGGTTGTTTATAGTACTGTTGAGTGATCAATCCGATCTTTCTGTTCTACTGTAATTCTATTGTTAAAGTCTCTTTTTCAAATCATTGATATCCAGTCCACCCTATCACGCATCAGATCACTGAGTTCACACAACAGATCATGAAGGGCGTTCACATCAGGTTTcagttcactttttttttttcatgttttttgctGCGTAAGTGACAGTGGAGAGGCTTAAGCTGACCAGTGGGGGAAGGAGTTAAGTGGGTTCTAGATGTATTTGAGCAGGAAAAAATGCAATTGCGATAAAGAAACTTGCAGACTGGAACAAAGGTCATAATGAAACTGAGCCAGAGAGGAGACATCACGACTATAATACAAAGGGCTGGATGCTAACTTGTAACAATATAGGCCTCCTAAGATAGCTGTATAGCATTTTGTAAAAGTTTAAGCAGAATTGGTT

Function

symbol description
lingo3 Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

NR:

description
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 3

GO: NA

KEGG:

id description
K23533 LINGO, LRRN6; leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812389.1 False 3508 mRNA 0.45 2 26098381 26135163
XM_039812390.1 True 4009 mRNA 0.47 2 26097785 26135163

Neighbor

gene id symbol gene type direction distance location
org NA coding upstream 44164 26050911 ~ 26053621 (+)
amh NA coding upstream 66722 26027275 ~ 26031063 (+)
ell ell,LOC102793352 coding upstream 113907 25951730 ~ 25983878 (+)
fkbp8 fkbp8 coding upstream 146746 25938748 ~ 25951039 (+)
ssbp4 ssbp4,LOC102228095 coding upstream 159953 25840802 ~ 25937832 (+)
atp8b3 LOC108230572,LOC103354223,LOC102796064,LOC102293201 coding downstream 8724 26143887 ~ 26189922 (+)
pias4a pias4,LOC102797537 coding downstream 109133 26244296 ~ 26257447 (+)
map2k2a map2k2 coding downstream 123141 26258304 ~ 26268496 (+)
tcf3b tcf3 coding downstream 171459 26306622 ~ 26339210 (+)
mbd3b LOC103354193,LOC101480296,LOC101063908,LOC104920733,LOC108230843,LOC105938962,LOC103399996 coding downstream 207279 26342442 ~ 26350427 (+)
G98312 NA non-coding upstream 172735 25884516 ~ 25925050 (+)
LOC120565749 NA non-coding upstream 260038 25786325 ~ 25837747 (+)
G98280 NA non-coding upstream 357236 25739131 ~ 25740549 (+)
G98196 NA non-coding upstream 489394 25558113 ~ 25608391 (+)
LOC120565050 NA non-coding upstream 576498 25520872 ~ 25521287 (+)
G98363 NA non-coding downstream 74 26135237 ~ 26136630 (+)
G98384 NA non-coding downstream 56705 26191868 ~ 26194089 (+)
G98494 NA non-coding downstream 362869 26498032 ~ 26498261 (+)
G98500 NA non-coding downstream 376021 26511184 ~ 26511527 (+)
G98546 NA non-coding downstream 736181 26871344 ~ 26871564 (+)
oaz1a oaz1,LOC104950707 other upstream 57919 26034751 ~ 26039866 (+)
dot1l dot1l,LOC102793654 other upstream 78414 25991506 ~ 26019371 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other upstream 358996 25730225 ~ 25738789 (+)
G98194 NA other upstream 550696 25532825 ~ 25547089 (+)
elovl1b LOC106963699,LOC101078639 other upstream 1223869 24852287 ~ 24873916 (+)
zbtb7a zbtb7a other downstream 147889 26283052 ~ 26295382 (+)
LOC120565098 NA other downstream 204380 26339543 ~ 26342293 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other downstream 656566 26791729 ~ 26796287 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other downstream 1237646 27372809 ~ 27377054 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 1524533 27659696 ~ 27832855 (+)

Expression


Co-expression Network