mysm1 (mysm1,LOC106613979)


Basic Information

Item Value
gene id mysm1
gene name mysm1,LOC106613979
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37108573 ~ 37114224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812393.1
GTGAGCAGAGCTGAACGCTGTTTTCCTCCAgcgctctctccctccctccgttGTTTACGTTTATCCAACAACATGGAGGACGAGGTGGATGTTGATATTGAAGGAGACGAGTTTGAAAGCAGTGCTAGCGAGCCGAATGGAGGAGGTTTAGTCCAGGAGCAGTTCATACAGTCTGCGTGGAAGAGCAGCGCAGGGATACTGCCATGGGAGCTGGACAGCTCCATCAGCCCAGAGAACAGGGAGGTGATCGAGAGGATGCTGCTGGAGGAACAATACTACCTGACAGGTGAGGGGATTCCTGACAACATTTGGGAAAGTGATGTGAACAACGAGCCCAAAGTGAAGAAGTCTCCGGCCAAGACGTCGGCCTCTGCCTCAGGCTCCTCTTATCGTTGGTCCAAACAGGAGAAAGAACTGTTTGAGGAAGGACTGGCTCAGTTTGGTCGAAGGTGGACTAAGATTGCCAAGTTGGTGGGGAGCCGTTCTGTCATTCAGGTCAAGAGCTATGCCAGGCAGTATTTTAAACACAAGgcTAAATCAGAACCCAGAGCTGCAGCTCCCTCTGCAGGCCCTGCGCTGCACTTACAACCACCTCAGCCCACCTCCAGTCGTGCATCCTCTCTGACAAACGCTGTCCGCATAGAGAAGCTTTCCGATGACGAGAACGAGGAGGTAGACATCACAGATGACCTCAGCGACGACGGAGACGGTGATGACGAGCCGCAGGCTGTTCTGAAGACTGAGATTTGGGAGCCAGAGCAGCTAGCAGGCCCTGAGGTCCAGACAGACACGGAGGAACAGAAAGAGGCAGGTCTGACTGAGACAAGGGACCAGCCCAGCCACACCTCGCCGTTTCCACAAAGTCCCCGAACCTCATTGGCCCTACCTTCCTTAGAGAAGACCAGTGTGACCGGGCTGGGCGAGAAAAGCAACGAGAGAGTATCAGTCCCTCATAAAGACCTTCCAGCATGGGCTCAGACGGACTCGGAGCAAATGGCCGATGAGAACGAAGACCAGAGCTCCCAGTCTGATAGCTCAGCACAGACTGGTCCACTGGACGAGGCCTGTAGCGATGGCACAGATACTGCTGATAAGACTGAGCAGAGTGCAGCTGATAGACCAGAAGAAGaccaggaggaggaagaggaagatgatgaggaggaggaggaagaagaagaagaagaggaggagcttAAGCCCCCTGAACAGGAAATAGAGATGGACATGGAGACCACCACTGAGGATGAGAAACAAGCTATCCCAGAGTTCTTTGAGGGACGACCATCCAAGACTCCTGAAAGATACCTTAGGATCCGAAACTACATCCTGGATCaatgGATGAAGAGCAAGCCCAAGTACCTGAACAAGACGTCAGTCCGCCCTGGACTGAAGAACTGCGGAGACGTCAACTGCATTGGGAGGATTCACACCTACCTGGAGCTCATTGGAGCCATCAACTTCAACTGCGAGCAAGCGGTCTACAATCGCCCAAAGGTGATGGACCGCTCCAAGCACAAGGAGGGCAAAGATGTGCTTGAGGCCTACCAGCTCGCCCAGAGACTGCAGAGTATGCGGACCAGGAAGCGGCGCGTGCGGGACATATGGGGAAACTGGCGTGACTCTAAAGATTTGGAGGGACAGACGTATGAGCATCTCAGTGCTGAGGAGCTGGCTCTGCGGAGAGAAGAGATGAAGAAGCAGCCGAAACCCTGCAAGATCTCCAGATTCAGGGGGTCTTTTGATCCATTCCAGTTGATTCCCTGCAGGTCTTTTGGAGAGGATGTACAGGAACCATTCCAGGTTATTGTGTGTGCAGAGACTCTTCTCATAATGGACATGGTATGccaaacacacaaccacacacgcTGAATGTATTTTCCCTTAGGTAGCACACACGTTACGAGTTATTCGAGTTATGTTTTCAGTGTGTGATTATGTTGTTAATTCACTGATCTGTAAGGCAGGCCAATCAA

Function

symbol description
mysm1 Predicted to enable histone binding activity; peptidase activity; and transcription coactivator activity. Acts upstream of or within cranial skeletal system development. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human MYSM1 (Myb like, SWIRM and MPN domains 1).

NR:

description
PREDICTED: histone H2A deubiquitinase MYSM1 isoform X2

GO: NA

KEGG:

id description
K11865 MYSM1; histone H2A deubiquitinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812393.1 True 1973 mRNA 0.52 14 37108573 37114224

Neighbor

gene id symbol gene type direction distance location
suco suco coding upstream 1481 37047277 ~ 37107092 (+)
dnm3a dnm3 coding upstream 78985 37005441 ~ 37029588 (+)
mettl13 mettl13,LOC102788519 coding upstream 103427 36993143 ~ 37005146 (+)
rangrf rangrf,LOC102787952 coding upstream 121612 36985858 ~ 36986961 (+)
LOC120565044 LOC104959247,LOC103354158,LOC101062866 coding upstream 177328 36922493 ~ 36931245 (+)
oma1 oma1 coding downstream 13561 37127785 ~ 37141592 (+)
LOC120566223 NA coding downstream 17945 37132169 ~ 37132305 (+)
dab1a dab1,LOC106952591 coding downstream 42252 37156476 ~ 37488138 (+)
LOC120565974 NA coding downstream 377437 37491661 ~ 37512914 (+)
plpp3 plpp3,LOC103365633,LOC104959557 coding downstream 418279 37532503 ~ 37565901 (+)
G100749 NA non-coding upstream 5684 37100787 ~ 37102889 (+)
G100747 NA non-coding upstream 61455 37046901 ~ 37047118 (+)
G100738 LOC103354147,LOC103137061,LOC106938442 non-coding upstream 65007 37039248 ~ 37043566 (+)
G100726 myoc non-coding upstream 130411 36968687 ~ 36978162 (+)
G100727 NA non-coding upstream 134524 36935167 ~ 36974049 (+)
G100847 NA non-coding downstream 85013 37199237 ~ 37199455 (+)
G100846 NA non-coding downstream 351950 37466174 ~ 37475077 (+)
LOC120566005 NA non-coding downstream 454860 37569084 ~ 37574819 (+)
G100906 NA non-coding downstream 544617 37658841 ~ 37659093 (+)
G100917 NA non-coding downstream 636637 37750861 ~ 37752138 (+)
prrc2c NA other upstream 150213 36932655 ~ 36958360 (+)
G100671 NA other upstream 409704 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 496827 36596041 ~ 36611746 (+)
smim24 NA other upstream 573991 36495484 ~ 36534582 (+)
G100568 lmnb2 other upstream 633378 36473538 ~ 36475195 (+)
G100843 NA other downstream 349690 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 1752211 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 2209360 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 2339896 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 2446837 39561061 ~ 39592762 (+)

Expression


Co-expression Network