ddx59 (ddx59)


Basic Information

Item Value
gene id ddx59
gene name ddx59
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17337825 ~ 17343549 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812401.1
GAACCACATTTCCCAACGTGCAAATCAATATTACGTCATTACTATGCGTCGGTGATTGTTTTGAACCGAACAGTTGGAAGAGAATGCGTTGGAAGGAGGTTAACAATCCATAACGATGTTTATGCCAAGAGCCCTGAAAGTAAAGAGACCTGCCCAGGTCTCAGGCCAGGTTTTTAATAAGAAAAGCAAGGTGGGTCAGCAGGAGAAAAAAGATGAAGGCAGTTCAGTGACACCTGTTCAGAAGGAGGAAGCATGTGAAGACACCAAACCACAGGATGAGATAATACAAGCAAGTGGAGAGTCAACAGGTTTGACAGAGAGCTCAGTGCAAGAAGATGGACATACGTCTGCCTCAAGTGATacggaggatgaggatgaggaggaggaaccTGTCAAATCATTCAAAAAGAGCCAGAGATGGCCAGAGCCAGGAGAGCctgtctgtgtgatgtgtggTCGCTATGGGGAGTACATCTGTGACAGCACTGACAATGATGTTTGCAGTCTTGAGTGCAAAGCTAAACATTTGGCCCAAATGGGGATGGGGACTGGGGCAGATGTGTTCAACCGTAAAGACAAAAATGGAGATGAAAGGACTCAACCTCAACAGCCAGCAGTTGACATTGGTGGAGTGGGTGAAAGGGAGACAGGCTATTCCTACAGGGACGATCGGTTCATATCAGGCCTAACCGATGAGCAGGTGCAGAGGATTAAACGGGAGCTGGGCATTGAAACCCAGGGGAGAGATGTCAGGAGACCCATCATTGAGTTTGAACACTGTGGATTTCCTGCCACGCTTAGTGGCAACCTGAAAAAGGCTGGCTATGAGGCGCCCACGCCGGTCCAGATGCAAATGGTCCCTGTTGGTCTTAGCGGCAGGGATGTGATTGCCAGCGCTGACACAGGCTCCGGGAAGACTGTAGCCTTCCTGCTGCCAGTGGTAGTGAGGGCAATAGAGaAACCAGCACACAGTGCGAGTAGCCCTGTGGCTCTCATCCTGACTCCCACCAGGGAGCTGGCCATCCAGATAGAGAGACAGGCCAAAGAGTTGCTGATGGGCCTCCCCAACATGAGAACCGCGCTGCTGGTGGGCGGCATGCCTCTTCCCCAACAACTCCACCGCCTCAAAAGCAGCATCAAAATTATCATAGCCACCCCTGGGCGACTCATTGAGATCCTGAAGCAGAAGGCAGTGCAGCTGGACAAAGTGAAGGTTGTGGTGGTTGATGAGGTCGACACTATGTTGAAGATGGGCTTCCAGCAACAGGTGCTGGAGGTTTTGGAGCAAGTCCCAGAAGATCACCAAACTCTGCTGGCGTCAGCCACCATCCCAACAGGGACGGAGGAGCTGGCTGGCCGATTGGTTCGTGACCCTGTTCGCATTGCTATTGGAGAGAAGAACCAGCCCTGTGCCAATGTGAGGCAGATCTTGCTATGGGTAGAGGAACCCtccaagaagaagaagctgtTTGAGATTCTCAATGACAGTAAGCTGTACCAGCCTCCAGTGGTGGTGTTTGTAGACTGTAAACTGGGGGCCGATCTACTGTGCGAGGCGGTCGCCAAGGTGACAGGCTTCAAGACTGTGGCAATCCACTCTGACAAGAGCCAGTGGGAACGCAACCGCATCCTCCGGGGTCTTCTGGATGGAGACTTTGAAGTGGTGATCAGTACAGGTGTGCTAGGCAGAGGACTGGACCTAGTCAACGTCAGATTGGTGGTTAACTTTGACATGCCAAACACAATGGACGAGTATGTCCATCAGATGGGCAGGGCAGGTCGGCTGGGACACCGAGGAACAGCCATCACCtttctcaacaacaacaacaaacggCTGTTCCTGGAGGTGGTGAAGCGGGTCAAACCCACAGGGTCCATCCTGCCCCCTCAGCTCCTTAATTCACCCCACCTCCATGAGCagcagaggagggagagacaaaagGCCAGACAAGGGTCTGATGACACGCTGGTCACTAAGAACAACCTCATAGACATCATAAGGAAACACGACCGGCGCAAGAAATAG
>XM_039812402.1
ATGTTTATGCCAAGAGCCCTGAAAGTAAAGAGACCTGCCCAGGTCTCAGGCCAGGTTTTTAATAAGAAAAGCAAGGTGGGTCAGCAGGAGAAAAAAGATGAAGGCAGTTCAGTGACACCTGTTCAGAAGGAGGAAGCATGTGAAGACACCAAACCACAGGATGAGATAATACAAGCAAGTGGAGAGTCAACAGGTTTGACAGAGAGCTCAGTGCAAGAAGATGGACATACGTCTGCCTCAAGTGATacggaggatgaggatgaggaggaggaaccTGTCAAATCATTCAAAAAGAGCCAGAGATGGCCAGAGCCAGGAGAGCctgtctgtgtgatgtgtggTCGCTATGGGGAGTACATCTGTGACAGCACTGACAATGATGTTTGCAGTCTTGAGTGCAAAGCTAAACATTTGGCCCAAATGGGGATGGGGACTGGGGCAGATGTGTTCAACCGTAAAGACAAAAATGGAGATGAAAGGACTCAACCTCAACAGCCAGCAGTTGACATTGGTGGAGTGGGTGAAAGGGAGACAGGCTATTCCTACAGGGACGATCGGTTCATATCAGGCCTAACCGATGAGCAGGTGCAGAGGATTAAACGGGAGCTGGGCATTGAAACCCAGGGGAGAGATGTCAGGAGACCCATCATTGAGTTTGAACACTGTGGATTTCCTGCCACGCTTAGTGGCAACCTGAAAAAGGCTGGCTATGAGGCGCCCACGCCGGTCCAGATGCAAATGGTCCCTGTTGGTCTTAGCGGCAGGGATGTGATTGCCAGCGCTGACACAGGCTCCGGGAAGACTGTAGCCTTCCTGCTGCCAGTGGTAGTGAGGGCAATAGAGaAACCAGCACACAGTGCGAGTAGCCCTGTGGCTCTCATCCTGACTCCCACCAGGGAGCTGGCCATCCAGATAGAGAGACAGGCCAAAGAGTTGCTGATGGGCCTCCCCAACATGAGAACCGCGCTGCTGGTGGGCGGCATGCCTCTTCCCCAACAACTCCACCGCCTCAAAAGCAGCATCAAAATTATCATAGCCACCCCTGGGCGACTCATTGAGATCCTGAAGCAGAAGGCAGTGCAGCTGGACAAAGTGAAGGTTGTGGTGGTTGATGAGGTCGACACTATGTTGAAGATGGGCTTCCAGCAACAGGTGCTGGAGGTTTTGGAGCAAGTCCCAGAAGATCACCAAACTCTGCTGGCGTCAGCCACCATCCCAACAGGGACGGAGGAGCTGGCTGGCCGATTGGTTCGTGACCCTGTTCGCATTGCTATTGGAGAGAAGAACCAGCCCTGTGCCAATGTGAGGCAGATCTTGCTATGGGTAGAGGAACCCtccaagaagaagaagctgtTTGAGATTCTCAATGACAGTAAGCTGTACCAGCCTCCAGTGGTGGTGTTTGTAGACTGTAAACTGGGGGCCGATCTACTGTGCGAGGCGGTCGCCAAGGTGACAGGCTTCAAGACTGTGGCAATCCACTCTGACAAGAGCCAGTGGGAACGCAACCGCATCCTCCGGGGTCTTCTGGATGGAGACTTTGAAGTGGTGATCAGTACAGGTGTGCTAGGCAGAGGACTGGACCTAGTCAACGTCAGATTGGTGGTTAACTTTGACATGCCAAACACAATGGACGAGTATGTCCATCAGATGGGCAGGGCAGGTCGGCTGGGACACCGAGGAACAGCCATCACCtttctcaacaacaacaacaaacggCTGTTCCTGGAGGTGGTGAAGCGGGTCAAACCCACAGGGTCCATCCTGCCCCCTCAGCTCCTTAATTCACCCCACCTCCATGAGCagcagaggagggagagacaaaagGCCAGACAAGGGTCTGATGACACGCTGGTCACTAAGAACAACCTCATAGACATCATAAGGAAACACGACCGGCGCAAGAAATAGTCTGTTCTCCCAATCATTCCTGCAATAGTGCTGAATTTTTATTtggtaaatgtttattttgtatattgtttattgaaaaaaaattgttttgacATATTCTGAATAAATGGCTTGTGTAATGTAAGACAA

Function

symbol description
ddx59 Predicted to enable RNA binding activity and RNA helicase activity. Human ortholog(s) of this gene implicated in orofaciodigital syndrome V. Orthologous to human DDX59 (DEAD-box helicase 59).

NR:

description
probable ATP-dependent RNA helicase DDX59 isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19466 DDX59; ATP-dependent RNA helicase DDX59

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812401.1 False 2026 mRNA 0.52 8 17337825 17343420
XM_039812402.1 True 2040 mRNA 0.51 7 17338407 17343549

Neighbor

gene id symbol gene type direction distance location
si:zfos-943e10.1 LOC103364910,LOC104945262,LOC104928005 coding upstream 82277 17236374 ~ 17255548 (+)
tbxa2r NA coding upstream 120035 17206770 ~ 17217790 (+)
ptprsa LOC103355422,LOC108234298 coding upstream 159940 16926619 ~ 17177885 (+)
LOC120565628 NA coding upstream 878025 16458187 ~ 16459800 (+)
uhrf1 uhrf1,LOC102797162 coding upstream 1020327 16301923 ~ 16317498 (+)
kif14 kif14 coding downstream 616 17344165 ~ 17369090 (+)
LOC120565631 LOC103364917,LOC104953203 coding downstream 26553 17370102 ~ 17467510 (+)
srek1ip1 srek1ip1 coding downstream 405883 17749432 ~ 17753834 (+)
ncl ncl coding downstream 520788 17864337 ~ 17875307 (+)
LOC120566215 NA coding downstream 522999 17866548 ~ 17866681 (+)
G96160 LOC100701835,LOC102794991,LOC101468118,LOC101061816 non-coding upstream 76795 17257393 ~ 17261030 (+)
G96088 NA non-coding upstream 459744 16877876 ~ 16878081 (+)
G96086 NA non-coding upstream 565655 16771969 ~ 16772170 (+)
G96076 NA non-coding upstream 661248 16676207 ~ 16676577 (+)
G96075 NA non-coding upstream 744643 16592876 ~ 16593182 (+)
G96202 NA non-coding downstream 79516 17423065 ~ 17423278 (+)
LOC120564955 NA non-coding downstream 277249 17620798 ~ 17636720 (+)
LOC120565502 NA non-coding downstream 327131 17670680 ~ 17699048 (+)
G96273 NA non-coding downstream 548103 17891652 ~ 17892398 (+)
G96341 NA non-coding downstream 1243079 18586628 ~ 18586965 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 961376 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 1036825 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 1705013 15523929 ~ 15632812 (+)
dennd1b NA other upstream 2413980 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 2633472 14689382 ~ 14704353 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 512082 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 1303154 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 1439051 18782600 ~ 18785636 (+)
G96513 NA other downstream 2187218 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 3205450 20548999 ~ 20564824 (+)

Expression


Co-expression Network