srek1ip1 (srek1ip1)


Basic Information

Item Value
gene id srek1ip1
gene name srek1ip1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17749432 ~ 17753834 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812403.1
GGTGAAaataagagaagaagaagacggaACCTAGTAGTTTCTAGAACAAATGTTTCCGTCCGACGTTATTTTGAGTGAAGACTCGTGttatttctgttgtttgctcTTCAAATTTACGGCTTTACCCTGGATAACTCAATGGCTACCCCTGGTCCAAATAAGGACAACATCAGAGCTGGGTGCAAGAAATGTGGATATCCGGGCCACTTGACCTTTGAGTGCCGAAACTTTGTCAGAGTTGACCCCCAGAAAGACATTGTTCTGGATGTAAGCAGCACCAGCAGCGAGGAGAGTGAAGACGACGAACCTGCACCTCAGCGCAATGAGAAGCTGGGGCGAAGTAGAGGTTCCCATGGCGATGACAACAATGGTagaaaagagagacacaaacgGAAGAAGAGCAGCGACAGAAAGTCAAGAAAGAGGTCTAAGTCGTCGAGTGATGAGaatacaaagaagaaaaagaaacgcAGAAGTTCTGACTCCTCATCTGacgaagaggagaggaggaagaagaagaaagtaaaaagccaaaagaagaaaagcaaaaagaacaaaagggaACATGGGAAGCATCagaagagacagaagaagaggaaacaagaatcctcctccccttcttctTCCACCTCCAGTGAATCCTCAGACATCAGTGACTGAGACAGCTGAACTCTGCAGTGTCTGGAGGTCCAATATGTTTATTCTCCAGTCCATGAAAAGTGTAAATAAGGCACCTCATCTTGTTCCATACAAGTGTACCGTATATTACTGAGACCAGGATTTAAATGATTAATTAGTGCAAAAACACTGTAGATTGCATTGTACACTGCATATAACATGCACATGAAACAAATATGTTTGGGGTTCTCTGAATCATTTTTGAAAACATACAAACCCAGGGAACATGTTCTGGTTAAGCGTTTCTTTGTTCTTGCAGACCCGCTGTCATTTCACATTTGACAGTGAAATATGTAACATGTTAAGTCTCCTGTCATACATATTGCTGAACATCAGTTTGAGTTTTTCAAGTCCAATCAAGAAATGTagttcaggaaaaaaaaaactggatatCTTCGGTAATAAGTTTCTGCATGCGgtccttttgtcttttgttcttTTATAGACTTTTATGCTTCACTACTTTGAAATTGTGccctaaaacattttaaaaggtcaaCTGTGAATGCCAAACCTCATTCGACATGATTCGAATGGCTAAAGGTAACAATGATAATATGAATAATTATCAACCCATTATTTTTGTCAGTGCTGACAAGTCAGCAGCAGTTGAACTACTGGCTAAtatcaaaagacaaaaaaaaaagtgtagtgTAGTTGCTGTTAATATGA

Function

symbol description
srek1ip1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Orthologous to human SREK1IP1 (SREK1 interacting protein 1).

NR:

description
protein SREK1IP1 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812403.1 True 1350 mRNA 0.40 5 17749432 17753834

Neighbor

gene id symbol gene type direction distance location
LOC120565631 LOC103364917,LOC104953203 coding upstream 281922 17370102 ~ 17467510 (+)
kif14 kif14 coding upstream 380342 17344165 ~ 17369090 (+)
ddx59 ddx59 coding upstream 405883 17337825 ~ 17343549 (+)
si:zfos-943e10.1 LOC103364910,LOC104945262,LOC104928005 coding upstream 493884 17236374 ~ 17255548 (+)
tbxa2r NA coding upstream 531642 17206770 ~ 17217790 (+)
ncl ncl coding downstream 110503 17864337 ~ 17875307 (+)
LOC120566215 NA coding downstream 112714 17866548 ~ 17866681 (+)
LOC120566228 NA coding downstream 114832 17868666 ~ 17868802 (+)
LOC120566229 NA coding downstream 117876 17871710 ~ 17871847 (+)
LOC120566214 NA coding downstream 118444 17872278 ~ 17872411 (+)
LOC120565502 NA non-coding upstream 50384 17670680 ~ 17699048 (+)
LOC120564955 NA non-coding upstream 112712 17620798 ~ 17636720 (+)
G96202 NA non-coding upstream 326154 17423065 ~ 17423278 (+)
G96160 LOC100701835,LOC102794991,LOC101468118,LOC101061816 non-coding upstream 488402 17257393 ~ 17261030 (+)
G96088 NA non-coding upstream 871351 16877876 ~ 16878081 (+)
G96273 NA non-coding downstream 137818 17891652 ~ 17892398 (+)
G96341 NA non-coding downstream 832794 18586628 ~ 18586965 (+)
G96353 NA non-coding downstream 859195 18613029 ~ 18613260 (+)
G96361 NA non-coding downstream 865724 18619558 ~ 18621342 (+)
G96372 NA non-coding downstream 905808 18659642 ~ 18659881 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 1372983 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 1448432 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 2116620 15523929 ~ 15632812 (+)
dennd1b NA other upstream 2825587 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 3045079 14689382 ~ 14704353 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 101797 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 892869 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 1028766 18782600 ~ 18785636 (+)
G96513 NA other downstream 1776933 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 2795165 20548999 ~ 20564824 (+)

Expression


Co-expression Network