cts12 (LOC104962698,LOC103357414)


Basic Information

Item Value
gene id cts12
gene name LOC104962698,LOC103357414
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37883875 ~ 37889889 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812430.1
CTGTTTTTTGGAAAGTTAGCTGTCAGGTGTTATGCTCACTTACAAACAGGTCATTGAAGGATTTACAATATTGCAGCTTTAGCTCTCTCTAAACGATAATAGAGGTATTGGAGCAGGCAAAGCATCTTATTTTTGTTGACTAATGTCCTTCTCAGGTGCTGGCATAAGTGTTGATTAAGGGATCCATTAAAGTATAGTGAAAACATGTAGGCTACTTATTGCTAAGCTTTATAAGGAAGGTTGACAGTGAGTCTGTTGCTGTGTAGCGGAGTATCTCTCAGACCATGGGAACAAAACAGACTCACATCCATGAAGTGCAGCCGGCCTACTTCCTGCTGCGAGCGGCGCTGctctctgtgctgctgtgcggCCCGCAGAGAGTGGCCTCGGACTCAGATGAAGTGGTCCAGACGGAGTGGGAGGTCTGGAAGAGCAGCTACGGCGTAGCTTACGAAGAAATGGACGACATGCAAAGGAGGGCCATCTGGGAGGAGAACAAGCACATGATCGAGAACAATAATCAAGGGTTTTTCATGGGGATGAGGCCGTTCACTATGGCCATGAATAAATATGGAGACCTGACGAGAAACGAGTACAAGGTTTTGCAAGGTGCCGCGATAGACTCCCAGTTTGTGAAGCGAGGGAAGACCGTCTCGGGCCGAAAGCTGCGTATCAACGCTAAAAAGTTAGATGCTGCGATTGTGGACTACAGGAACATGGGTTATGTCACTGAGGTGAAAGACCAGGGTTACTGTGGCTCGTGCTGGGCCTTCAGCACTACGGGAGCTATCGAGGGACAAATATACAAGAGGACAGGTCAGCTTGTATCGTTGAGTGAACAAAACCTGGTGGACTGCTCCAGATCGTATGGTACCTACGGCTGCAGTGGTGCCTGGATGGGCAACGCCTATGACTATGTGGTCAACAACGGGCTGCAGTCAACAAACACCTACCCATACACCTCAGTGGACACCCAGCCCTGTTACTACGACAGCAGACTTGCAGTTGCCCATATCAAAGACTACAGGTTCCTGCCCAAAGGGGATGAGCAGGCTCTGGCTGATGCCGTGGCAACTATTGGTCCAATCACAGTAGCTCTTGATGCAGATCATTCCAGCTTCCTGTTCTACAGCTCAGgaatATACGATGAGCCAGCCTGTAACTCTAACAATCTGAGTCACGCGGTGCTGCTGGTCGGCTACGGTTCTGAAGGAGGCCAAGACTACTGGATCATCAAAAACAGTTGGGGAAGCAGTTGGGGTGAAGGCGGCTACATGCGAATGGTCCGAGATGGCAGAAACACTTGTGGCATCGCGAGCTATGCTTTGTACCCTATTCTATGATTCTGATAAGATGCTTCAGTCGTGTGTTAATGCTGAACTCTTTCACTGCTGTCAGTGGGTCTCGGAAAACAACATCAGCCATTGCTTTAACAGCCCATATCATCTCTAAAACACTCCTGTCATCCATATTTTCTAAACCTTTCTGACACTGTATACACGTTTTGAGCTCACATGAACCTTTGACAGTgaacactttgcttctctcaggGATGTAGTGCACACACCAACCTGTGGCTAGAAATACTGTTAGCCTTCCTAAAGTTTTATTGATTAGTCTAACTCAccaaatacatataaaaaaaccTGCAATTTAACTAACTGAAAGTGAAACTATGAACAGAAGTAAAAACACGTTCTTCCACTTTCACATGAAAAAGGGGAATGTGGAAGTAATAACACACTATTGGGATTGTGCTGTTACAATTTTATGGTGGTTaattttagcaaatgttagcaaacTTGCTGTATAATAGACATTACTTAGTCAGTTCACTGACTTGGGACTTGTGAAATTAACTCACAACTAACACAACAATAACTTGAATATGTTTGAGACAGAACAAATAATATGGTTTCTTTGTATTTTCAATGCAAATAAatgtttctgcattttttttctaccaTTATAAACAATATTTTATACCTAATGGATAAACTGAAATGTTTTGACTTCTG

Function

NR:

description
cathepsin L1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812430.1 True 2018 mRNA 0.44 8 37883875 37889889

Neighbor

gene id symbol gene type direction distance location
LOC120566157 plekhb2 coding upstream 29516 37850073 ~ 37854359 (+)
LOC120566156 plekhb2,LOC106613863 coding upstream 34275 37843726 ~ 37849600 (+)
cep19 cep19,LOC102796355 coding upstream 45770 37836407 ~ 37838105 (+)
aqp12 LOC104962685,LOC103357409 coding upstream 67530 37814617 ~ 37816345 (+)
si:ch211-121a2.4 LOC100711177,LOC104919118,LOC102794329 coding upstream 86926 37793281 ~ 37796949 (+)
lama3 NA coding downstream 403 37890292 ~ 37915047 (+)
impact hrh4,impact,LOC100712525,LOC102292561,LOC101478323,LOC102218847,LOC105928845,LOC103137092,LOC103376683 coding downstream 61269 37951158 ~ 37990276 (+)
LOC120565667 hrh4,LOC104967234,LOC100712525,LOC102292561,LOC101478323 coding downstream 93445 37983334 ~ 37984742 (+)
LOC120565755 LOC103357426,LOC102194044,LOC102293839,LOC102798827 coding downstream 203137 38093026 ~ 38136180 (+)
nrl LOC104947091,LOC103357430,LOC105353878 coding downstream 278572 38168461 ~ 38178363 (+)
G100963 NA non-coding upstream 10140 37871456 ~ 37873735 (+)
G100956 NA non-coding upstream 44344 37838902 ~ 37839531 (+)
G100940 NA non-coding upstream 66118 37817373 ~ 37817757 (+)
G100938 NA non-coding upstream 69835 37813783 ~ 37814040 (+)
LOC120565000 NA non-coding upstream 70465 37809268 ~ 37813410 (+)
G100978 NA non-coding downstream 66715 37956604 ~ 37973191 (+)
G101066 LOC108281047 non-coding downstream 108566 37998455 ~ 37998703 (+)
LOC120565003 NA non-coding downstream 123300 38013189 ~ 38015274 (+)
G101080 NA non-coding downstream 156155 38046044 ~ 38046823 (+)
G101081 NA non-coding downstream 167699 38057588 ~ 38062672 (+)
G100843 NA other upstream 393803 37463914 ~ 37490072 (+)
prrc2c NA other upstream 925515 36932655 ~ 36958360 (+)
G100671 NA other upstream 1185006 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 1272129 36596041 ~ 36611746 (+)
smim24 NA other upstream 1349293 36495484 ~ 36534582 (+)
usp46 usp46 other downstream 976546 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 1433695 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 1564231 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 1671172 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 1804023 39693912 ~ 39740277 (+)

Expression


Co-expression Network