LOC120566157 (plekhb2)


Basic Information

Item Value
gene id LOC120566157
gene name plekhb2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 37850073 ~ 37854359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812438.1
ACGCGGGTGGGGCTAAGAGCAACGGTGTCCACTCGATTTATTGGTCAGGCTTTTGGACTCCCAACGACGAGGGCATCGTCTTTTTTTGTACATCTCACGTTCCGTGTTTGCTCTATCCTTCCTCTAACGAAAGACttaatatttttcataaaagataaaaaataatcaagtGTTGCCTGCCTAAGATGTCTATGGTAAAGAGTGGTTGGCTCCATCGACAAAGTACCATACTGCATCGGTGGAAAAGAAACTGGTTTGATTTGTGGGTCGATGGATGGCTTGTGTTCTATAATAATCAGCAACGGCGTGACGTGGAGGATGACGTCCACATGAGGGACGAATGCATTGACATCCGCAACTTTTATGCTTGTCAAGAGCTGAACCCTCCGGAGGGGAAGATGCGCGATGCCTTCCTTCAGATAGTGTTGCGAGATGGACGGGTCATCAGCCTGTGTGCAGACAGCGCATATGATGCTCTGGCATGGACCATGGCACTTCAGGATGCCAGAATTAATGCGgtgGTCGCTACACCTCAGATCGGCTTTGCACAGGAAGTGATAGCATCTGCTCCTCCCCCCTACTCAGAATATGCTCCACCACTTCAGGGTTATGCCCTGGGACCGTATGGAGAATATGTTGCACCTCCGCCACATGCTACACAGATTGTTTACTCTGCTGATGGGCAGCCCTACGCTTATCCTCATCACTACCAAGgTGGGTACACCACTCCTGAAGTGAACCATGTTGTTATTCATGAACCCCAGCATGAAGACCGAGGAGATGTGCCTTGGGGCATCCTCGCTGGAACAGCAACTGGTTTGACACTTGGTGctctcttctctgtcttctAATGTCTTCATTAATGTACATTTAGTAGCACATACTGCctatgtgtttttatatatatata
>XM_039812439.1
CTACGCGGGTGGGGCTAAGAGCAACGGTGTCCACTCGATTTATTGGTCAGGCTTTTGGACTCCCAACGACGAGGGCATCGTCTTTTTTTGTACATCTCACGTTCCGTGTTTGCTCTATCCTTCCTCTAACGAAAGACttaatatttttcataaaagataaaaaataatcaagtGTTGCCTGCCTAAGATGTCTATGGTAAAGAGTGGTTGGCTCCATCGACAAAGTACCATACTGCATCGGTGGAAAAGAAACTGGTTTGATTTGTGGGTCGATGGATGGCTTGTGTTCTATAATAATCAGCAACGGCGTGACGTGGAGGATGACGTCCACATGAGGGACGAATGCATTGACATCCGCAACTTTTATGCTTGTCAAGAGCTGAACCCTCCGGAGGGGAAGATGCGCGATGCCTTCCTTCAGATAGTGTTGCGAGATGGACGGGTCATCAGCCTGTGTGCAGACAGCGCATATGATGCTCTGGCATGGACCATGGCACTTCAGGATGCCAGAATTAATGCGGGTTATGCCCTGGGACCGTATGGAGAATATGTTGCACCTCCGCCACATGCTACACAGATTGTTTACTCTGCTGATGGGCAGCCCTACGCTTATCCTCATCACTACCAAGgTGGGTACACCACTCCTGAAGTGAACCATGTTGTTATTCATGAACCCCAGCATGAAGACCGAGGAGATGTGCCTTGGGGCATCCTCGCTGGAACAGCAACTGGTTTGACACTTGGTGctctcttctctgtcttctAATGTCTTCATTAATGTACATTTAGTAGCACATACTGCctatgtgtttttatatatatatatatatata

Function

symbol description
plekhb2 Predicted to be involved in regulation of cell differentiation. Predicted to be integral component of membrane. Orthologous to human PLEKHB2 (pleckstrin homology domain containing B2).

NR:

description
PREDICTED: pleckstrin homology domain-containing family B member 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812438.1 True 910 mRNA 0.48 8 37850075 37854351
XM_039812439.1 False 833 mRNA 0.46 7 37850073 37854359

Neighbor

gene id symbol gene type direction distance location
LOC120566156 plekhb2,LOC106613863 coding upstream 473 37843726 ~ 37849600 (+)
cep19 cep19,LOC102796355 coding upstream 11968 37836407 ~ 37838105 (+)
aqp12 LOC104962685,LOC103357409 coding upstream 33728 37814617 ~ 37816345 (+)
si:ch211-121a2.4 LOC100711177,LOC104919118,LOC102794329 coding upstream 53124 37793281 ~ 37796949 (+)
dhcr24 dhcr24,LOC102794897 coding upstream 58449 37782584 ~ 37791624 (+)
cts12 LOC104962698,LOC103357414 coding downstream 29516 37883875 ~ 37889889 (+)
lama3 NA coding downstream 35933 37890292 ~ 37915047 (+)
impact hrh4,impact,LOC100712525,LOC102292561,LOC101478323,LOC102218847,LOC105928845,LOC103137092,LOC103376683 coding downstream 96799 37951158 ~ 37990276 (+)
LOC120565667 hrh4,LOC104967234,LOC100712525,LOC102292561,LOC101478323 coding downstream 128975 37983334 ~ 37984742 (+)
LOC120565755 LOC103357426,LOC102194044,LOC102293839,LOC102798827 coding downstream 238667 38093026 ~ 38136180 (+)
G100956 NA non-coding upstream 10542 37838902 ~ 37839531 (+)
G100940 NA non-coding upstream 32316 37817373 ~ 37817757 (+)
G100938 NA non-coding upstream 36033 37813783 ~ 37814040 (+)
LOC120565000 NA non-coding upstream 36663 37809268 ~ 37813410 (+)
G100926 NA non-coding upstream 83297 37766191 ~ 37766776 (+)
G100963 NA non-coding downstream 17097 37871456 ~ 37873735 (+)
G100978 NA non-coding downstream 102245 37956604 ~ 37973191 (+)
G101066 LOC108281047 non-coding downstream 144096 37998455 ~ 37998703 (+)
LOC120565003 NA non-coding downstream 158830 38013189 ~ 38015274 (+)
G101080 NA non-coding downstream 191685 38046044 ~ 38046823 (+)
G100843 NA other upstream 360001 37463914 ~ 37490072 (+)
prrc2c NA other upstream 891713 36932655 ~ 36958360 (+)
G100671 NA other upstream 1151204 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 1238327 36596041 ~ 36611746 (+)
smim24 NA other upstream 1315491 36495484 ~ 36534582 (+)
usp46 usp46 other downstream 1012076 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 1469225 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 1599761 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 1706702 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 1839553 39693912 ~ 39740277 (+)

Expression


Co-expression Network