lsm4 (lsm4,LOC106613629)


Basic Information

Item Value
gene id lsm4
gene name lsm4,LOC106613629
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15379515 ~ 15382779 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812446.1
ACAGCCATGATTACACACCACAACGCCGGAAACTCATTagaagaagacgaagaagaaCAGTATCTACTAGCTAGGTGGCAAAATCGTGTCAGTGAAGGGCCAAGACAGCAAGTGAGACATAAAATCATAAAGCTATTCTATCACAATGCTTCCACTATCTCTGCTGAAGACTGCCCAGAACCATCCTATGcTGGTGGAGCTGAAGAACGGAGAGACGTACAATGGTCACCTGGTCAGCTGTGACAACTGGATGAACATCAACCTGAGAGAAGTCATCTGCACCTCGAGGgatggagataagttctggagGATGCCTGAGTGCTACATCAGAGGAAGCACCATCAAATACCTGCGAATCCCCGACGAGATCATCGATATGGTGAAGGAGGAGGTGGTGTCGAAGGGCCGTGGACGTGGAGGCACCCAGCAGAACAAACAGCAGGgcaaaggaagaggaggaggagccggCCGCGgTCTGTTTGGCGGTCGTGGCAGAGGAATGACTGGTCCTGGTCggggccagcagcagcagcagcagcagcagcagctgcagcagcaggataaGAAACCGGGCAAACCACAGGGAATGAAGAACCAGCACTAACATTACACCTTCAACAACACATCCTGTCAATCAGAGTAATTTCTCCTTCAATACATGAAGATAAAATTGACTCTCTGGTGTTTCCTTCTGCTGTGATGTTTTGTCAGGACAGACCATTGCAGAAATCACACCGGGAGACGTTAAGAGAAGCTGTGCTTTTGCactgaattttgttttttagcATCTGTAAGTTGgtattaacactttttttagtATGACCATGTACCAGTGTATCAGTCAGAGCTGACAGACTCCTTCTTTAGAATCATTCATCATAATATGTCATCACAACTTTGCAAGAACATTTTGTATCATAAATCACATTGTATTATCCAAGAACAGTTTCTTGTCAGTTGGTACACTGGGATGAggttttttagttttagttattatttttgtcatttggtCTCCTCAGGTGTAGTCTTCATGGTAAAGAAACTACCTAGCCCCAACTTCTGTtgcatgaatattttttttaacttgctctttatttttgtgttgtttgtgatgTTCTGTGGTTTGTCTGCTGCGCCGTATGGTCCGATCATGGCAGGTAGACCAGTAGACTGGCAGTCGGGACAAGAAATCAGTCCCTGAAAATTTACACTTTTGTTAAAGCATTTGTAAGATGACACATTATGATCATTAGGatttccagaaaaaaaaaagattctcatATTCTTAAGTCTGAAATGGATAA

Function

symbol description
lsm4 Predicted to enable U6 snRNA binding activity. Predicted to be involved in P-body assembly and spliceosomal snRNP assembly. Predicted to act upstream of or within mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process. Predicted to be located in nucleus. Predicted to be part of U6 snRNP and spliceosomal tri-snRNP complex. Predicted to be active in P-body. Orthologous to human LSM4 (LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated).

NR:

description
PREDICTED: U6 snRNA-associated Sm-like protein LSm4

GO: NA

KEGG:

id description
K12623 LSM4; U6 snRNA-associated Sm-like protein LSm4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812446.1 True 1304 mRNA 0.44 5 15379515 15382779

Neighbor

gene id symbol gene type direction distance location
ddx49 ddx49 coding upstream 28922 15343666 ~ 15350593 (+)
uba52 uba52,LOC100136537,LOC100135798,LOC100194659 coding upstream 83835 15293595 ~ 15295680 (+)
rabgap1l rabgap1l,LOC106574055 coding upstream 225938 15027011 ~ 15153577 (+)
gpr52 gpr52,LOC104944265 coding upstream 301044 15072598 ~ 15078471 (+)
fam163ab fam163a,LOC102222863 coding upstream 353196 15001169 ~ 15026319 (+)
LOC120566177 jund,LOC104930914,LOC103360786,LOC101484003 coding downstream 87868 15470647 ~ 15472763 (+)
mpv17l2 NA coding downstream 115247 15498026 ~ 15505221 (+)
LOC120565844 NA coding downstream 124078 15506857 ~ 15512275 (+)
LOC120564879 NA coding downstream 130372 15513151 ~ 15522405 (+)
LOC120564991 NA coding downstream 337410 15720189 ~ 15723206 (+)
G95640 NA non-coding upstream 82322 15296284 ~ 15297193 (+)
LOC120565370 NA non-coding upstream 111330 15222133 ~ 15268185 (+)
G95496 crb1,LOC102787887,LOC102294192,LOC103365562 non-coding upstream 447434 14930512 ~ 14932081 (+)
G95493 NA non-coding upstream 453912 14923952 ~ 14925603 (+)
G95492 NA non-coding upstream 500228 14879082 ~ 14879287 (+)
G95681 NA non-coding downstream 5219 15387998 ~ 15389142 (+)
G95710 NA non-coding downstream 91815 15474594 ~ 15478157 (+)
G95729 NA non-coding downstream 250134 15632913 ~ 15633568 (+)
G95731 ifi30 non-coding downstream 251719 15634498 ~ 15635947 (+)
G95735 NA non-coding downstream 256973 15639752 ~ 15646044 (+)
dennd1b NA other upstream 455670 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 675162 14689382 ~ 14704353 (+)
G95460 NA other upstream 758102 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 1979771 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 1996768 13379398 ~ 13382747 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 141150 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 907044 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 937715 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 2472852 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 3263924 18646703 ~ 18665113 (+)

Expression


Co-expression Network