LOC120566171 (LOC108248660)


Basic Information

Item Value
gene id LOC120566171
gene name LOC108248660
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 1322405 ~ 1380914 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812460.1
CCGACAGAGGAATCCGGAGACCAGCGCTCTTGCAGCGGGGTTACCGACCCAGAGAATCCGGAGACCAGCGCTCTTGCAGCGGGGAGATTTTGGGGAAACGTCGCGGGGCTCCCCGGTCGGAGCTCCGGGTTGCTCCCAGCTAGATGTTACATAAAAGCCTGAAAGAAGACATAAATCCTGAATGAGCTCCGGTAGTTGCATGCTGCGGGTCCGACCCGGTTCTGACGGAGTACAAAAAGATGAAACTTTTGGACAGTTTGTCCTCGCGGAGGCGGTTCTTCTGGACCCATGTGGCGGATTATTATCGCTGTGCCTGCTGGGAAATAAATCAGTTAAAgtgatgaatattttttttaattttttgtattaACTCTACATTCGTGTCTGTGTGCTCCTGAGAGGTTTTTCATGTATTCTGATTCCGGTTCTGGTCTCTGCGGGTCTCGGAGCTGATAAGAGAAGACACGCGGATGTTAAGCGGGGCTCCGCGAGTTGCGCGGCCGCGCATGGAGCGCTGCGGgcggccgctgctgctgctgctgctcggtCTGCTGCTCCGGTTCTGCTCCGCAGTCATCGACGACAGGCTCATCTCCGACCGGTACGCGGTCTACTGGAACAGCTCCAACCCCAGGTTCTCCCGTGGCGATTACACGGTGGAGGTGGCGATCAACGACTACCTGGACATCTACTGCCCGTACTACGAGGGGGCGGAGCCACCCGGGCGACAGGGGGCGGGGCCAGCGGAGCGGCAGGGGGCGGGGCCAGCGGAGCGGCTAGAGAACTACATCCTGTACATGGTGAACTACGACGGCTACACCAGCTGTGACCACCGGCGGACCGGCTTCAAGCGCTGGGAGTGCAACCGGCCGCTGGGCGCCAGCGGGCCGCTCAAGTTCTCCGAGAAGTTCCAGCTGTTCACGCCCTTCAGCCTGGGCTTCGAGTTCAGGCCGGGACACGAGTACTACTACATCTCGTCTCCACATCCCAACCTGGCGGGGAAACCCTGTCTGAAGCTCAAAATCTACGTCAAACCAACCAatgaCTCTGTGTACGAGTCTCCGGAGCCCTTCCTGACGGACGACACCACCGGTGGCTGCGGCCTCGCTGGGCCCTGCCATTCGCTGCTGGCCGCCATGTTGCTCGCCATCCTCCTCATCATCGCCTCCTCTTAGCCCCGCCCCCCGCTGCCGGCCGTCACGATGCTCGCCATCCTCCGAAAAACCCAGAGACAAGAAAACAAACCCGGCGCCCCCCTGGCtgctcagccaatcagaggaggaGCCTGGAGTTTAAATTCTGCAGAAAATTCTTTAAAGTTCTGTGTCTCCCCGCTGCAGGCCGCCATCCTCCACACCTCCTCACAGCCgcctctttcctcttccttcaTTTGGACGGATCTCCGTCTTCCCATCGCTCTGCGGATAAAACCCGACATAGGAAACAAAACCCGCCC

Function

NR:

description
PREDICTED: ephrin-A2-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812460.1 True 1456 mRNA 0.59 4 1322405 1380914

Neighbor

gene id symbol gene type direction distance location
plppr3b NA coding upstream 297262 1010747 ~ 1025143 (+)
med16 med16 coding upstream 313192 983651 ~ 1009213 (+)
grin3bb grin3b coding upstream 367169 886359 ~ 955236 (+)
wdr18 wdr18 coding upstream 467907 832241 ~ 854498 (+)
stx6 stx6 coding upstream 514166 784199 ~ 808239 (+)
LOC120565564 LOC102210819 coding downstream 157085 1537999 ~ 1574777 (+)
LOC120565565 LOC108250349,LOC108249964 coding downstream 244660 1625574 ~ 1630680 (+)
sid1 NA coding downstream 255049 1635963 ~ 1637498 (+)
serpinc1 NA coding downstream 510640 1891554 ~ 1908999 (+)
LOC120565574 NA coding downstream 599924 1980838 ~ 1993868 (+)
G92071 NA non-coding upstream 20825 1103192 ~ 1301580 (+)
G92074 NA non-coding upstream 87608 1217304 ~ 1234797 (+)
G92166 NA non-coding upstream 91678 1230117 ~ 1230727 (+)
G92085 NA non-coding upstream 110565 1111418 ~ 1211840 (+)
G92087 NA non-coding upstream 110927 1182546 ~ 1211478 (+)
G92069 NA non-coding downstream 414 1381328 ~ 1385015 (+)
G92084 NA non-coding downstream 4484 1385398 ~ 1402927 (+)
G92082 NA non-coding downstream 6595 1387509 ~ 1387877 (+)
G92183 NA non-coding downstream 10415 1391329 ~ 1412871 (+)
G92070 NA non-coding downstream 37835 1418749 ~ 1676140 (+)
G92169 dbt,LOC102778223 other upstream 66211 1241387 ~ 1256194 (+)
trmt13 NA other upstream 93726 1220810 ~ 1228679 (+)
G92157 NA other upstream 118359 1202887 ~ 1204046 (+)
G92146 NA other upstream 152359 1168821 ~ 1170046 (+)
G92019 NA other upstream 563429 722373 ~ 758976 (+)
LOC120565410 camk4,LOC102194929,LOC102785978 other downstream 82805 1463719 ~ 1535856 (+)
G92201 NA other downstream 198041 1578955 ~ 1910061 (+)
G92234 NA other downstream 316060 1696974 ~ 1804395 (+)
G92264 NA other downstream 486738 1867652 ~ 2000993 (+)
LOC120565570 NA other downstream 486807 1867721 ~ 1889087 (+)

Expression


Co-expression Network