si:ch211-262h13.5


Basic Information

Item Value
gene id si:ch211-262h13.5
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11514958 ~ 11523948 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812473.1
AGGCTGAACGCAAACACAAGAGAACAAACGTTAAACCAGCTCTGTCTTTTAGCTCCTGGAATCTCTGCCACCATGGCTGAATCCATCTGCACATTATTACGGCTATTATCCCTGCTGTCCATtcacactctgtgtgtgtacgcAGAGGGTTTTGCACTGTCGCCTATTGAACTTGCTCCCATCCCCTGTAATGACAAAGCAGTGGAGAAGCTATCTCGTCTGGCTGTAACTTACATCAATGAGGATCGCCCCGATGGCTACAAGTTTGCCCTCAACCGCATTGCAAATGTCCACCTGCACGCTCAGGGCCCAGCAGGCAATGTGTATTACCTGGACCTGGATGTCCTGGAGACCAAGTGTCACATAGGCAGCCCAAAACCATGGAAAAGATGTGATGTCAGACCGTTCATGGAAAcaCAAATCTCTGGCAACTGTAACACCACCATTCTCCACACACCAGAGGGATACTCCTACCTGTACAGCTACGACTGCACTCTTGTCCCAGATCCCCCAGAGAAGCTCCAGCAGACCTGTCCAACCTGCCCCCTCCTGCTCCCTGTAGATAGTCCACAGGCTGTGAATGCTGCCCAGGCCACTTTGGCATCCTATAAGAGACAGTCCACACTGGGTGCAGAGCTCGGAGTAAAGAAGATCACCAGAGCTGCAGCGCAGGTTGTGCCAGTGAAAGCCAGCTTTGTGGAGTACACCGTCCAACAGTGTCCAGAGGGAGTGACAGAAAGAGGCACCTGCCGGCGACTGACAGTCAAGTCTGACACAGAGACTGCAGGTTTCTGTGCAGGATCTGTGCACGGAGACTTAACCGTCCATCCTGATGTCCGGGTGTCCTGTGAGATGTTCAAAGCACAGGATGTGGACATCTTCAGACCCGTGCAGCCTCAGGGTCACGAACTCCCCCAAGACCATGCGATCCCAACCTTCCCCACTGTGTTCGATGACCAAGGAAATGATCTGCTGCCTGTTCCCTCTTACACCACACTGCCCCCTGCTGTTCAACCACTGCCATTTGACCCCACACCCATTCTCCCTCTGCCCTTTGACCCCCCCGTTGTGGTTAACCCCTTTATTCCCCTCAGCTCATCTTCCAGTGAGTCTGCTGAAGATCTAGTAAACCAGCAACAGCGACCCCCAGGTGCTGGTCCTTCTGCTTCATCCTCTGAAGAGATAGGAGGCCCCGTGGCACTACGACCACCCATTGACTTCCACTACAAGAGGCGTGACCGCAAGAGACGGCAGGCCCTGGCGGAGACCTCACCCTCTCACAACCCAACCTTCCTGTCTGATTTCCCCAGTGGGTCTTCTCCTTTCCGCTCCTGTCCTGGTCCTGCTCGCTACACCACAGTTTAACTAACTGGTGCAGCCGGTGACGGGGTGGACCGATAAACTGCTCTGCTCCCTGTCACTGTAGGCTTGTAATAGCCTTATTTTATGATAATGAGAGGAATGCCATCTCTTCTCACTGGCCCTGAAATTACCTCTCTGCTGCTAATACTGCTCCCAAAGCAGCCAAAGCTAAAACCATATATGTATTTGAAAATGGCTTCAaatattttaactattttaaataaatcttgaATCCCCTGTCAACTGCTTGATGAATTTATATACTTTACTTACTAGCAGTCTAATACTTACAGTATCTATTTTGGTGGTATAAAGCAAAGGAATTTAGATTTTGGAGCTGAATATAAGAGCAGAAACGGTTTATCGATTCGTTGATTGAAAGAAAATTAATCTGTAACTATTttagaaagaagaaaataacatCTGCTAATTGGGTTTACGGCTGTGAGAGTTTTTTGCTTTCCATGTGTTTTATATCTTTCTAAATTAAACATATATTTGGATTTTGGCTTTTCAAAACAGGACATTTGAAGACATTGATTTAGGTTCTTGGAAATTGTCATGGGCATTGTTTGGATGTTTTGTAATCTAAACAATGaatcaattaatttattttaattgcaCCACTAAAATATTCAGCGGCAGTGATTTCTTACAACCAGTGTACTGAATTCCCTTGTAACACATTGCACTACTATGCCCTGATAATGGATGAAatggatttctttttctttgaactTGCACTAAAATGTTTTAAGAAAACACTGAGAGAAAAATACGAAGTTCTGTGAGGAAGCACAAAAatattagacaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: fetuin-B-like

GO:

id name namespace
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05133 Pertussis
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812473.1 True 2187 mRNA 0.46 7 11514958 11523948

Neighbor

gene id symbol gene type direction distance location
LOC120565022 NA coding upstream 24920 11473356 ~ 11490038 (+)
LOC120566075 LOC101470345,LOC102300495,LOC102205443,LOC103370586 coding upstream 158087 11311738 ~ 11356871 (+)
LOC120565497 LOC103370597 coding upstream 210865 11248434 ~ 11304093 (+)
trnam-cau_8 NA coding upstream 266311 11248575 ~ 11248647 (+)
ccdc17 NA coding upstream 277057 11222522 ~ 11237901 (+)
LOC120566036 LOC104946463 coding downstream 1522 11525470 ~ 11549098 (+)
dnai3 wdr63 coding downstream 32409 11556357 ~ 11576634 (+)
LOC120565976 col24a1 coding downstream 160414 11684362 ~ 11786933 (+)
ddah1 ddah1 coding downstream 310607 11834555 ~ 11916573 (+)
c9h1orf210 LOC104958367 coding downstream 446415 11970363 ~ 11980286 (+)
G94706 NA non-coding upstream 274721 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 320028 11194647 ~ 11194930 (+)
G94690 NA non-coding upstream 338741 11176004 ~ 11176217 (+)
G94688 LOC104952604 non-coding upstream 387938 11126756 ~ 11127020 (+)
G94687 lrrc7,LOC103129487 non-coding upstream 393274 11121469 ~ 11121684 (+)
G94747 NA non-coding downstream 52840 11576788 ~ 11577261 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding downstream 127574 11651522 ~ 11659072 (+)
G94813 NA non-coding downstream 392683 11916631 ~ 11920037 (+)
G94997 NA non-coding downstream 1341964 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 1471287 12995235 ~ 12995654 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 56812 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 566642 10946932 ~ 10948316 (+)
G94598 NA other upstream 573714 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 1100132 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 1355077 9985719 ~ 10159881 (+)
znhit6 znhit6,LOC102790327 other downstream 265187 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 637690 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 1218857 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1481620 13005568 ~ 13100445 (+)
G95046 NA other downstream 1649077 13173025 ~ 13220372 (+)

Expression


Co-expression Network