c9h1orf210 (LOC104958367)


Basic Information

Item Value
gene id c9h1orf210
gene name LOC104958367
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 11970363 ~ 11980286 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812475.1
CTTGTCCTTCTGGGAAGCAGCTGCAGAGTACACCTCGTTCAACCTTTGCACAACATTTCTccattttacagaaaaaaactaaacaaaatgtaGTTAAGACTGATGTGAAATTTGAGAGCGGACAGACAGCAGGTGAACTCGCTGAAGCTCGTGGAAACTACACAGTCAGGTGACCAGCCTCATTTGACTGCAGCAAGAGGACACTGGCTTCATTTCAACTCATAGGATGATAATGCTGCCACCATATTTTACTTGTTACTGAACCGAGGAGTCCCAGCTGTCACTCAACCTTGCCACCTAGTGGAGCTTTGAAGGTTTAACTCCCTTCTGGTCAACAGTAATCTTCCAGACAACTACCTCCCTCATCTGGGGAAATGCCTGCCCTGCAACATTTCCCTTTGATCCCATTTATTTTGCACGTGCTGAACATTGTTTGGTGAAGGaattaaaaacctttttttgcaGCTACAGTTAAGAGGCTCTCAATTAGtcgaccaaaaaaaaaaactgttcctTCACTGACATATGTGTGATATGCACCCATGATCCCTGACTTCATGCTAGTGTTGAGGGAGCCCCAAAGCAAGAGCATCCAACAAGAAGCAAATTGAGCCACACAGGAGAAGTCAGTCCCTAAAAGAGACTGCACAAACAGCCAGATGGAACCAACAATTGGCACGCTCTCTACAGCTACACCAACTGCAACACAAAATCACACGTTCGATAGCCAGACAGACAAATATAAATCTCACAACTGGGAGTTCCTGGTGGCCGTCCTGGTCACAGCCATCTCCATCTCCATTCTCATCGCCCTTCTGGCTAAATGCCAGGTGGTCCGGCGTTACCTGGCCAGCTACAGGCACACACggctgagagagacagacaacatCAGCCAGTGTCAACCTTcagGCCTGGAGGGGGAATTTGCCATGCACAGGGGCCGTGGAATTAACCCTCACTGCCTCCCTCCTGTGAGCGAGGAAGATGATGACGGCTTCATTGAGGACAACTACATCCCGGCCAGTGAGAGAGCGAGGGCTGAAAGAGCAGCGGAGAACATGGAGGACatggaggacacagaggaagaAATGGATGAAATTGAATTTACCATCGCTTAGAGGGACTGTCTCTACACCTCCTCGGCTTGATAAACCCCTGAAAATCCAATTCTAGTCCCACCTTTCCTctatttttaagtaaaatccatATTGTcgattagtaaaaaaaaaagaaaaaaaaggttaggaaagcataaaaatgtaaataccaGTGCTCAAGAGTGTCTTAATTTCAAGACAGCACAGAATGACTTAATTCAAAGTGCATTATTATGGCAGTATCTCTCAATGCATGATCTGTGGATCCATAAAAGTCCCCTAAAATATAAATAGAAGTCAATTTTGTCCTGGCATTTGTCAGTATACTAACAATGGCCATAATATGTTTCTATAAGATAATTGAAGGAACCACATTTTGTCCTGAAACAGTAAAAATGAGTGAAAATAGATCAATTGGTCTTCTGCAAATATGAACATTAACTAATCACCTTTGTATCTGTGACTGAGTTGTTGGTTAAGTGATTTGTTGACACAGattatgcaacaaaaaaaatctctgtATAATTCAGACAAATAACCACAGTTGCGCTGAATTTGAACAGGAACATTTCACTTTGCACTGACAACATGTTTGTCAGTGAAACAGGCAATTGTGTAGATAgatacagtgtgtatgtgtgtaaaatatTATTGAAGGCCTTTACTGTAATAAAGCAGTAGCAACTGAGCAACATGAGGACATTGTGATGCTCTGCTCTCGGTCAGATCAACAGCTTTATGAGAGACTAGCAAAATTAAATTTATATCtttaaatgttgtgttgttACAGCATCACTGTAcattgtgatttttattttttcaaaaactaacGTGCCTTTTACATATGCTTAAAAAAGGCTCAATTATGTTATAGTAAAAGCATTAGCCTACTAGTTACTTTCAATTTGGCTGCTATTTTTTAGAATGGTAACAATAGACTGGGACTGTACTTCATTCACACTGTATGATATTTGGTCAGGAAATTGTAAACCTTAATAAAAATCCCGAAATAGTGTCGCCTGGA
>XM_039812476.1
CAGGAGACGATGGGGAAGAGGCCTAATGGCTGGTGCTAAGCAGCCGGATCCCTCTTGCTGTGAAAAATCACCTCAGAGCCAAGAAGGAGACACACAAATCTTAATCTGGACTGCAAGAGAATCCTCATTTGACTGCAGCAAGAGGACACTGGCTTCATTTCAACTCATAGGATGATAATGCTGCCACCATATTTTACTTGTTACTGAACCGAGGAGTCCCAGCTGTCACTCAACCTTGCCACCTAGTGGAGCTTTGAAGGTTTAACTCCCTTCTGGTCAACAGTAATCTTCCAGACAACTACCTCCCTCATCTGGGGAAATGCCTGCCCTGCAACATTTCCCTTTGATCCCATTTATTTTGCACGTGCTGAACATTGTTTGGTGAAGGaattaaaaacctttttttgcaGCTACAGTTAAGAGGCTCTCAATTAGtcgaccaaaaaaaaaaactgttcctTCACTGACATATGTGTGATATGCACCCATGATCCCTGACTTCATGCTAGTGTTGAGGGAGCCCCAAAGCAAGAGCATCCAACAAGAAGCAAATTGAGCCACACAGGAGAAGTCAGTCCCTAAAAGAGACTGCACAAACAGCCAGATGGAACCAACAATTGGCACGCTCTCTACAGCTACACCAACTGCAACACAAAATCACACGTTCGATAGCCAGACAGACAAATATAAATCTCACAACTGGGAGTTCCTGGTGGCCGTCCTGGTCACAGCCATCTCCATCTCCATTCTCATCGCCCTTCTGGCTAAATGCCAGGTGGTCCGGCGTTACCTGGCCAGCTACAGGCACACACggctgagagagacagacaacatCAGCCAGTGTCAACCTTcagGCCTGGAGGGGGAATTTGCCATGCACAGGGGCCGTGGAATTAACCCTCACTGCCTCCCTCCTGTGAGCGAGGAAGATGATGACGGCTTCATTGAGGACAACTACATCCCGGCCAGTGAGAGAGCGAGGGCTGAAAGAGCAGCGGAGAACATGGAGGACatggaggacacagaggaagaAATGGATGAAATTGAATTTACCATCGCTTAGAGGGACTGTCTCTACACCTCCTCGGCTTGATAAACCCCTGAAAATCCAATTCTAGTCCCACCTTTCCTctatttttaagtaaaatccatATTGTcgattagtaaaaaaaaaagaaaaaaaaggttaggaaagcataaaaatgtaaataccaGTGCTCAAGAGTGTCTTAATTTCAAGACAGCACAGAATGACTTAATTCAAAGTGCATTATTATGGCAGTATCTCTCAATGCATGATCTGTGGATCCATAAAAGTCCCCTAAAATATAAATAGAAGTCAATTTTGTCCTGGCATTTGTCAGTATACTAACAATGGCCATAATATGTTTCTATAAGATAATTGAAGGAACCACATTTTGTCCTGAAACAGTAAAAATGAGTGAAAATAGATCAATTGGTCTTCTGCAAATATGAACATTAACTAATCACCTTTGTATCTGTGACTGAGTTGTTGGTTAAGTGATTTGTTGACACAGattatgcaacaaaaaaaatctctgtATAATTCAGACAAATAACCACAGTTGCGCTGAATTTGAACAGGAACATTTCACTTTGCACTGACAACATGTTTGTCAGTGAAACAGGCAATTGTGTAGATAgatacagtgtgtatgtgtgtaaaatatTATTGAAGGCCTTTACTGTAATAAAGCAGTAGCAACTGAGCAACATGAGGACATTGTGATGCTCTGCTCTCGGTCAGATCAACAGCTTTATGAGAGACTAGCAAAATTAAATTTATATCtttaaatgttgtgttgttACAGCATCACTGTAcattgtgatttttattttttcaaaaactaacGTGCCTTTTACATATGCTTAAAAAAGGCTCAATTATGTTATAGTAAAAGCATTAGCCTACTAGTTACTTTCAATTTGGCTGCTATTTTTTAGAATGGTAACAATAGACTGGGACTGTACTTCATTCACACTGTATGATATTTGGTCAGGAAATTGTAAACCTTAATAAAAATCCCGAAATAGTGTCGCCTGGA

Function

NR:

description
PREDICTED: type III endosome membrane protein TEMP

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812475.1 True 2121 mRNA 0.41 4 11970363 11980286
XM_039812476.1 False 2066 mRNA 0.41 4 11974465 11980286

Neighbor

gene id symbol gene type direction distance location
ddah1 ddah1 coding upstream 53790 11834555 ~ 11916573 (+)
LOC120565976 col24a1 coding upstream 183430 11684362 ~ 11786933 (+)
dnai3 wdr63 coding upstream 393729 11556357 ~ 11576634 (+)
LOC120566036 LOC104946463 coding upstream 421265 11525470 ~ 11549098 (+)
si:ch211-262h13.5 NA coding upstream 446415 11514958 ~ 11523948 (+)
ap1m3 LOC104919037,LOC103355575,LOC103463064,LOC107392936,LOC106528254 coding downstream 1243 11981529 ~ 12014434 (+)
ebna1bp2 NA coding downstream 75852 12056138 ~ 12061625 (+)
usp1 NA coding downstream 469766 12450052 ~ 12459145 (+)
angptl3 angptl3 coding downstream 514468 12494754 ~ 12499047 (+)
atg4c atg4c coding downstream 532320 12512606 ~ 12522434 (+)
G94813 NA non-coding upstream 50326 11916631 ~ 11920037 (+)
G94779 clg17h1orf52,LOC104926352,LOC103370521,LOC101473273,LOC102790030,LOC102310746 non-coding upstream 311291 11651522 ~ 11659072 (+)
G94747 NA non-coding upstream 393102 11576788 ~ 11577261 (+)
G94706 NA non-coding upstream 730126 11238444 ~ 11240237 (+)
G94691 NA non-coding upstream 775433 11194647 ~ 11194930 (+)
G94997 NA non-coding downstream 885626 12865912 ~ 12866251 (+)
G95002 NA non-coding downstream 1014949 12995235 ~ 12995654 (+)
G95027 jak1,LOC102785183 non-coding downstream 1127403 13107689 ~ 13112320 (+)
G95040 NA non-coding downstream 1166019 13146305 ~ 13146795 (+)
LOC120564967 NA non-coding downstream 1392158 13372444 ~ 13375668 (+)
znhit6 znhit6,LOC102790327 other upstream 148481 11789135 ~ 11821882 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other upstream 512217 11359690 ~ 11458146 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other upstream 1022047 10946932 ~ 10948316 (+)
G94598 NA other upstream 1029119 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 1555537 10363462 ~ 10414826 (+)
lrp8 LOC103355569 other downstream 181352 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 762519 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 1025282 13005568 ~ 13100445 (+)
G95046 NA other downstream 1192739 13173025 ~ 13220372 (+)
LOC120565776 NA other downstream 1355448 13335734 ~ 13342098 (+)

Expression


Co-expression Network