niban1a (LOC104958505)


Basic Information

Item Value
gene id niban1a
gene name LOC104958505
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4714655 ~ 4784151 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812507.1
AAAAAGTGAGCTGGCTTTTCTGGCTGCACGTCACTGAGTGAGAAGAGGAGGGcgtgtccctccctccctcctccctccctctccctctctctcctcctccctctcagctGTAGATCGATGTGACTGTATGTTTGTACCTGAGGACTGAACCGTTCACCTGTGGATCCTCtcccggcagcagcagcagcaccatggGGAACTCCGCGTCCAGTCTGCTGGATGAAACCAAATCCAACTCCATCAAagcccaGGCCGAGGCCGTGCTGAAGGAGTTCAGTCCCTACTACAGGAAGCAGTTCTCGTTGGCTCGGTTCTCTCAGGTGGAAGATGATCTGGAGCAGCGCAAAGAGAAGATcacacagctgctccaacagaggGAGGCTCCCGAGGAGGCCGAGGTGCTGTATGAGGACCTCGTCCTGCACTTCGACGACAGCAGGAAGTGGCGTGAGCGCTTCGTGGTGGTgagagccaatcacagcctgGAGTTACACGACAGCCTGGAGGCGTTCGTTAAAGGAAGTCATCCCCGCCTGAAGCTGCTGCCTACGGGGGGCGCCGTTCTGACCTCCGAGGACGCCTACATGGCCATGGTGGACCAGAGCTTCCCCGACGACACCAATGTGAAGGAGGACTTTGGTCCTCCTCTGGCGGGCATGCCGGGACAGTTCCCCGTCTACCTGCGTCTGCCCTACCGGACAGACTCGTACTTCTGCTTCAGACAGCAGGACCGACAAgccctcttcctctccatccTGTCGGACTGCATCCGACACCAGAACCAAGACTTCCTGAAGAAGAAGACGTGTGAAGTGCAGGCCTTCCTCAAAGCCATCCAGCTCTACCgacaggacagagaccagtacGAGGCCTGGGGCATGCTGATAGGAAGTGATGTCAGGgtgatgGCCAACGAGGTGATGGAGCAGCTGCTGCCGTCTCTTGTGGTCGACCTGCTGCCTCGCCTCAAAGCCAAGAAGACGGAGAAGAGGAGAGTCTGGTTCGCTACGGTGGAGGCGGCGTACGTCCTGGTCCAGGAGCATCTGCTGGAGGGACTCTCGGCGCTGAAGGAGGAATGTCGAACGTCGGTCCGGCAGCAGGAGGTGCTCATCCACTCCGAAATGGACCACATCCTCAGCTCCAGACGGCAGCTGGAGGAAAAAGTCCGAGCCAAAGTGTGGGCGCCGGCGGAGCAGCTGTGCTCGGAGCGCGTGCAGCCCTACCTGGCCTCGGTGCTGGAGGAGCTGATGGAGCCGGTCAGCTCGGGTTTCCAGGAGGGACGGCAGCTGAGCGAACGCACGATGGACCGGCTGTGTCAGGACGTCCCGCTGCTGGCCGACAGCGAGGGACTGAAGGAGgcTCTCGCTGGCATGGCGAGACCAGACCTGCTGAGCTGCTACCAGAAGATCGGCTCTCTGCAGGAGAaactgcagcagctgcagcagaggtTCGGGGTCTCCAACATCACGGGGGTGATCCACAGCGCTCAGATCGACCTgcagcagCTGGCCGAGAACGCAGCGTACACGTTTGAGCAGCTGCTCCACAAAGCCGTCGAGGACAACCCGGACGACCCCGGCTCCGCCATCGAGAAGGCCAAACACAGAGTGCTGAAGCAATATGATTACGACAGCAGCACGGTGAGGAAGAGGATCTCCAGGGAGGCTCTTGTACTCATCACTCTGCCCTTCATCAAGAAGAACCTGGCCCCCACCTGCAAAactgagcTTCAGGGTCTTGAACAGTTCATCGATGCCGACCACTCCAACTTCATCCACGTCGAGAACGTTTATGAGAGCGTCCTCCTGCAATCCCTGGACAGAGAGGTCACCAAagTGGTGAAGGAGGCGGCGAGCCTGAAGAAGTACAACCTGTTCACGGACAGCAGGGACCTGCTCAGTCAGTCCAGCCGCTCCAGCGTCTCGTCCACGCCGGGCAGCCCCGCCATGGCGCTCGCCTCCCCCTCTAAAACCTCCTCTGAGTCCAGGTCTCCTCTCGCGTTCAACGGTCATCCGTCCAGTCCCCCGAAGGACGAGCCGACGGGGGCGGAGAACGGTGACGAGACCGTCTTTGAGACCCCTCTGCAGAAGGTCGAACAAATATTGGTAGCTCAGAGCGCTGCTGTCAGCGCGGAGGCAGAGGCAACGCCACCCGAAGCGCCAGAAGTCGACCAAACTGTGAAGGCAGAAGCAGCCGCCCCTGTTGCACTCGAGCCGCCGGCGTTTGGAGATTCGACCAACCAGAGCGAGACGCAGGAAGTGAACGTAGAAACCGCTGCAGAGACTGTGATCCAAGAGGAAGCGATCTCTGTCGAGACGGCAGCTGAGCCTCCGATGCAGAGCACAGACCCTCCAAAAGAGGGAGAAACCACAGAAACGGCCGCAGACGTAGAAGCGGCAGCGGCACAGACCGAAGCGCCCGTGCCAAGTCCCGACGCCGCGAAGGAACCGGGGAGCTCTTCAGCAGGAGGCACTGGGGCCCAAACTGCATCCAGCGGTGAAGAGGAGACGCACCGCGAGCGCTCAGAAATCAAGCCAGCGGCTCCCTCTGGTGGTCAAACGCCCGCGCTCCCACCTGCAGACATCAGCGTAGACCGGAGTCTCCAGGAGGCAGAACCAGTGAACGTCTCGGGCCCAAGCTCTCTGGACGTGTCCGTAGGAAGCGAGTCGGCCCCGTCGGATGTGGAGTCCCTGGAGGGAGTGGAAACGACGCAGAGCAGCGAGGAGGACAAAGTCTCAACGACTTCTGACGTCTTGGAGGACGCCGCCGACATCAGTAAATCACCGGAGAGCTCCGACGATGCAGCAGAGGATGAGAACGCGAGCGCCGAGCCGTCTCCTCCGGTCCAGACAGAAACTGTGAGCACCGGGGACACTGAGGCGAGCGCCGAGCTGTCTCCTCGGGTCCAGACCGAAGCCACAAGCGCCGAGCCGTCTCCTCCGGTCCAGACCGAAGCCGCGAGCGCCGAGCCGTCTCCTCTGGTCCAGACCGAAGCCGCGAGCGCCGGAGACACCGAGGCGAGCGCCGAGCCGTCTGTGGAGGCAGCAGCCGCTCCAACCGCTGCGCCCGCTGAGTACGTGAACCCGTCCCGCCCTGAAGCGCCGCCCGACTGCATCAAGCAGATCCGTGACCTGGTGATGGAGGTGATCGAGGTGGAGGAGCTGGTGCAGCGCTACCCCGACGGCGTTCCTAAAGCCTCGGAGGAATGAAGCATCACGAACCATCACGAGCGCTTCGTCGCTGTTCGTTTCAGCGAGACGAAGAGCGGCCGGGAGCCACGAGCCGTCCTGGAGCCAGAAACATTTGTTGAACCGAAGGCACTCCGTCCTGAGAAGGATTCACAAAAGCTTCCATgaactttaaaaacaaacatatgcATGATAACTATGGTGAATTATTTATGCTTTCATTTACACACATCAATATATCAGCAGTGTCGGTGTCATTcagtgatttgtttttaacactAAAACTATTTCAGcaccaaaatgtttttacaaaagATTGTGAAGAAGTTTCTGGAAATTTGCATTTAACAGTAGAAAGcttgtgcattttatttttgaaggaatagtttttagacatttttgaaaatacttttaatttgctttctttctgagaGTAGGATGTAAGGATTGGTATCAGTCTGTATGGGAGCTGGAGTCAGGACGttcttagcttagcttagcataaagcctGGAGTCAGGAcatgcttagcttagcttagcataaagcctGGAGTCAGGAcatgcttagcttagcttagcataaagcctGGAGTCAGGAcatgcttagcttagcttagcataaagcctGGAGTCAGGAcatgcttagcttagcttagcataaagcctGGAGTCAGGACATGCTCTGTCCAAAGTAAAATACACCTACTGACACCTCAAAAACGTGTCGTAAACATTAATtagaacagaaatgtaaaaatgcagagttttaaAAGAGAGCATCCTGTTGGAACTATTTTCTCGGCTAAACCGCAGATACGCAGATACAACACAAATAAAAGTCCTGAGTTAGAcattttactttagtaaaagtattaCCAGCTTAAAAGGATCAACAGTAAAAGTAATCATTCTGCAATATTGCTCTTCTTTTCAGTGTGACGGTGTGAGACAGTATAttgcaatgcatcatattttataaaccgATCACATGTTTAACAAGCAAAATCCAAATCTGAAAGGTAACAACTATAGCTGTCAGATGAACATAGTGGAGTAAAAACATTTCCCTTTTGAGATGGGAAGTAGAAGTATGAAGTTGCAGGAAATGGAAATACTTGTAAATTACAAGTAGATCAAAATCGTCAAGAAAATAGTTCCAGCACGCAACTCCCGCTAAAACCCACAAACTGGCGTTTTTACTTTTCCGTTTGTGTACGAATTAAACAAACCTGACCCAACGTGTTAGTTAGGGAGACGTAGAGCTGTTGGTAGGTGTACTTTAATTAAAAtgcctgttgtcctcgggtcaaatctgacctgtttacaaaaactttctataACAGAAGTGTgacaaaagaatgttgaaataaagtgacaaatgttggaaaaagctacaaaaa

Function

NR:

description
protein Niban-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812507.1 True 4588 mRNA 0.54 14 4714655 4784151

Neighbor

gene id symbol gene type direction distance location
LOC120565686 LOC104953734 coding upstream 52470 4657761 ~ 4662185 (+)
LOC120565681 NA coding upstream 111502 4599472 ~ 4603153 (+)
LOC120565674 NA coding upstream 195062 4515052 ~ 4519593 (+)
LOC120565669 NA coding upstream 271131 4439340 ~ 4443524 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding upstream 294874 4408643 ~ 4419781 (+)
mettl11b mettl11b coding downstream 68797 4852948 ~ 4873356 (+)
gorab gorab coding downstream 150610 4934761 ~ 4946307 (+)
prrx1b prrx1 coding downstream 182408 4966559 ~ 5000440 (+)
LOC120566192 NA coding downstream 240359 5024510 ~ 5201875 (+)
mast2 mast2,LOC102294889,LOC102799744 coding downstream 427019 5211170 ~ 5486885 (+)
G93308 NA non-coding upstream 107862 4592376 ~ 4606793 (+)
G93286 NA non-coding upstream 208681 4500549 ~ 4505974 (+)
G93288 NA non-coding upstream 212603 4496053 ~ 4502052 (+)
G93293 NA non-coding upstream 247344 4461129 ~ 4467311 (+)
G93294 NA non-coding upstream 249221 4460271 ~ 4465434 (+)
G93335 kifap3 non-coding downstream 14260 4798411 ~ 4805232 (+)
G93345 NA non-coding downstream 109167 4893318 ~ 4893706 (+)
G93348 NA non-coding downstream 149920 4934071 ~ 4993591 (+)
G93349 NA non-coding downstream 154997 4939148 ~ 4939410 (+)
G93350 NA non-coding downstream 159494 4943645 ~ 4943947 (+)
trmt1l trmt1l other upstream 1422 4685224 ~ 4713233 (+)
LOC120565391 NA other upstream 401140 4284755 ~ 4313515 (+)
G93150 NA other upstream 496829 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 890873 3714919 ~ 3823782 (+)
G92848 NA other upstream 1107830 3600978 ~ 3606825 (+)
G93613 NA other downstream 1251218 6035369 ~ 6051520 (+)
G93638 NA other downstream 1417934 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 1570741 6354892 ~ 6381598 (+)
G93938 NA other downstream 2565659 7349810 ~ 7350587 (+)
LOC120565294 pycrl other downstream 3094768 7878919 ~ 7890177 (+)

Expression


Co-expression Network