LOC120566212 (irf4,LOC104941070)


Basic Information

Item Value
gene id LOC120566212
gene name irf4,LOC104941070
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7415441 ~ 7423820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039812533.1
TCCCGCTGCTCGCTATAGGCTGGAGGATTTAAGCGGGCCCGCCGTAATGATGAGGGCTTTCTGAGACTGATTGATTTCAAAACTTGACGGGTTTCGAGTTTCACAGAGATGAACGCAGAGGTGGATTACGGAGGCTCCGGGAGCAGCGGGAACGGAAAGCTGCGCCAGTGGCTCATCGAGCAGGTGGACTCCGGCAAATACCCCGGGCTGGTGTGGGAGAACGACGAGAAGAACATCTTCAGGATACCGTGGAAACACGCCGGGAAACAGGACTACAACCGCGATGAGGATGCCGCGCTTTTCAAGGCCTGGGCGCTGTTTAAAGGCAAGTTTCGGGAGGGGATCGACAAGGCGGACCCGCCGACCTGGAAGACTCGCCTCCGCTGCGCCCTCAACAAGAGCAATGACTTCGAGGAGCTGGTGGAGAGGAGCCAACTGGACATCTCAGACCCGTACAAAGTGTACCGCGTCATCCCTGAGGGCGCCAAGAAAAGACCCCGACAGGACGACAGTCCTCTGAGTCCAATGAGCTATCAGGTGCACTCCCCCTATCCTGCACTGCAGACTCAGatGCCACAGTACGTGCCCACACCAGAGTGTGGCTGGAGAGATTACTGTCAGGAACAGGCCGCCCTGCCTGAGCTGCCCTACACTCAGTGTCCCTGTCCCCCCCGCAGCCTGCCATGGCAGGGCCCGTCCATGGAGAATGGATACCAGCTCAGAGCCTCGATTTACTCGTACGGTCCTGCTGACAGCCAGCCCTCGCCTTTCTCGCTGGACGCCAGCATCAGATCAGCGGAGGCGCTCTCAGACTTCCgcctgcatgtgtctgtgtatttccGAGAAAATCATGTGAGGGAGGTGACCACCTCCAGTCTGGAGGGCTGCCACATCACCCCAGAAGAGAAGCACTACCTGCCGCCCGGAGGTCCCGAGGTGATCCCCCTGCCTGTGGACAGTCTCTCGGCCCACAGGATGGCAGAGGAGTGTCCCCCGAGTCCCCCGTCCAGCCTGGAGAGGGGAGTGTTACTGTGGATGGGCCAAGACGGACTGTACGCTCGGCGGCTGTGTCAGAGCCGAGTGTACTGGCAGGGAGGACTGCCCCAGTACGGGGACAAGCTCAACAAACTGGAGAGGGAGGTCACCTGTAAACTCCTCCACACACAGGACTACCTGACAGAGATCCAGAGCTGTGGGCTCCACGGTCGGCCGCTGCCTCGCTTCCAGGTCGTGCTTCATTTTGGAGACGAGTGCCTGGACCCGCAGAGACAGAGACGGACCCTCACAGTCCAGGTGGAGCCGCTGTTTGCCAAGCAGCTCCAGTACTACGCCCAACAGATGGGCAGCCACTACTACCGTAGCTACGAGCACCCGGGGGTCACGGAGCACATAAACACCTCTGAGGACTACCAGAGGACCATCACACACCACCACAGCAGCAGCCTGCAGGAGTGATCTCAGTAGGTTCAAGTGACTGTTGAAAACTTCAAGATGCAGCAGTGACCTTTGACCCAAGAGCCCGGAAAACTCAGAGACAGGAGGACAATGTATTATTCATAAAAATGAAGGACATTTAGTGACAGTATGCAGTTTGCCCTgtagggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtctctgtgt

Function

symbol description
irf4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of cytokine production and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Biomarker of dilated cardiomyopathy and hematologic cancer (multiple).

NR:

description
PREDICTED: interferon regulatory factor 4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09445 IRF4; interferon regulatory factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039812533.1 True 1692 mRNA 0.58 9 7415441 7423820

Neighbor

gene id symbol gene type direction distance location
LOC120566053 dusp22 coding upstream 1749 7398138 ~ 7413692 (+)
LOC120565797 slc22a23,LOC102794535 coding upstream 36097 7353848 ~ 7379344 (+)
LOC120565613 NA coding upstream 129682 7263547 ~ 7285759 (+)
igfbp3 LOC103358919 coding upstream 288169 7108149 ~ 7127272 (+)
si:ch211-191a24.3 LOC103358916 coding upstream 347507 7007170 ~ 7067934 (+)
foxq1b foxq1,LOC104946962 coding downstream 156372 7580192 ~ 7581837 (+)
foxf2b foxf2,LOC102792585 coding downstream 162321 7586141 ~ 7590299 (+)
LOC120564954 foxc1,LOC104932399,LOC104963658 coding downstream 179640 7603460 ~ 7605630 (+)
LOC120565646 LOC103354728,LOC102290039,LOC107394705 coding downstream 438394 7862214 ~ 7867728 (+)
LOC120565295 tsta3,LOC104953080 coding downstream 444771 7868591 ~ 7873986 (+)
LOC120566054 NA non-coding upstream 20163 7394373 ~ 7395278 (+)
G93933 NA non-coding upstream 87755 7327171 ~ 7327686 (+)
G93932 LOC103399850 non-coding upstream 92015 7322066 ~ 7323426 (+)
G93931 NA non-coding upstream 93986 7318842 ~ 7321455 (+)
G93912 NA non-coding upstream 128288 7271936 ~ 7287153 (+)
G93985 NA non-coding downstream 101170 7524990 ~ 7525343 (+)
G93986 NA non-coding downstream 133434 7557254 ~ 7615427 (+)
LOC120565893 NA non-coding downstream 468404 7892224 ~ 7895718 (+)
G94056 LOC104961454 non-coding downstream 529595 7953415 ~ 7955102 (+)
G94057 NA non-coding downstream 567468 7991288 ~ 7991555 (+)
G93938 NA other upstream 64854 7349810 ~ 7350587 (+)
rhpn1 rhpn1 other upstream 1033843 6354892 ~ 6381598 (+)
G93638 NA other upstream 1201424 6202085 ~ 6214017 (+)
G93613 NA other upstream 1363921 6035369 ~ 6051520 (+)
trmt1l trmt1l other upstream 2702208 4685224 ~ 4713233 (+)
LOC120565294 pycrl other downstream 455099 7878919 ~ 7890177 (+)
LOC120565614 NA other downstream 472325 7896145 ~ 7905247 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other downstream 813550 8237370 ~ 8286436 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 1723342 9147162 ~ 9168877 (+)
LOC120566011 NA other downstream 1960685 9384505 ~ 9543535 (+)

Expression


Co-expression Network