LOC120565003


Basic Information

Item Value
gene id LOC120565003
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38013189 ~ 38015274 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640176.1
taacatacacatcagtctgccagaaattcagaagaagaggaagaagaaacaccTCCTGTCCTCTCTACCCCCGTAGAAGAAGAACGCCCCCCTCCCCCGCAGTTGTTGGAATTTTGAATTTTCTCACAACAGTCGTTGGAAATAACCGTCGCTTCGCGCTCTATCCGTTTTGGCCTGTGCTTCTTCGGTGAAACTTCGTCGTGTATTCAAGGTTATTTTGAATGGACAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCCTCGGATGACAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATTAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTGCGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCTCTGtggaaattattttttcttcttcttttttttttattccccatGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGGTGAGGTTGTTTGTCCTT
>XR_005640177.1
taacatacacatcagtctgccagaaattcagaagaagaggaagaagaaacaccTCCTGTCCTCTCTACCCCCGTAGAAGAAGAACGCCCCCCTCCCCCGCAGTTGTTGGAATTTTGAATTTTCTCACAACAGTCGTTGGAAATAACCGTCGCTTCGCGCTCTATCCGTTTTGGCCTGTGCTTCTTCGGTGAAACTTCGTCGTGTATTCAAGGTTATTTTGAATGGACAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATTAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTGCGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCTCTGtggaaattattttttcttcttcttttttttttattccccatGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGGTGAGGTTGTTTGTCCTT
>XR_005640178.1
taacatacacatcagtctgccagaaattcagaagaagaggaagaagaaacaccTCCTGTCCTCTCTACCCCCGTAGAAGAAGAACGCCCCCCTCCCCCGCAGTTGTTGGAATTTTGAATTTTCTCACAACAGTCGTTGGAAATAACCGTCGCTTCGCGCTCTATCCGTTTTGGCCTGTGCTTCTTCGGTGAAACTTCGTCGTGTATTCAAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCCTCGGATGACAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATTAGGTGCAGATCAGACCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTGCGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCAGACTACACTCACCCAATCCACACTATTCTCTGtggaaattattttttcttcttcttttttttttattccccatGACCCTGCCTTGAGGGCAGCGCCTTGGATGGATATGGGATGGTGAGGTTGTTTGTCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640176.1 True 981 lncRNA 0.49 6 38013189 38015274
XR_005640177.1 False 968 lncRNA 0.48 6 38013189 38015274
XR_005640178.1 False 963 lncRNA 0.49 6 38013189 38015274

Neighbor

gene id symbol gene type direction distance location
impact hrh4,impact,LOC100712525,LOC102292561,LOC101478323,LOC102218847,LOC105928845,LOC103137092,LOC103376683 coding upstream 22913 37951158 ~ 37990276 (+)
LOC120565667 hrh4,LOC104967234,LOC100712525,LOC102292561,LOC101478323 coding upstream 28447 37983334 ~ 37984742 (+)
lama3 NA coding upstream 98142 37890292 ~ 37915047 (+)
cts12 LOC104962698,LOC103357414 coding upstream 123300 37883875 ~ 37889889 (+)
LOC120566157 plekhb2 coding upstream 158830 37850073 ~ 37854359 (+)
LOC120565755 LOC103357426,LOC102194044,LOC102293839,LOC102798827 coding downstream 77752 38093026 ~ 38136180 (+)
nrl LOC104947091,LOC103357430,LOC105353878 coding downstream 153187 38168461 ~ 38178363 (+)
LOC120564983 LOC100690982,LOC103357424,LOC102799593,LOC101477196,LOC104919101 coding downstream 163757 38179031 ~ 38188686 (+)
ppat ppat coding downstream 183722 38198996 ~ 38209487 (+)
aasdh NA coding downstream 202541 38217815 ~ 38235264 (+)
G101066 LOC108281047 non-coding upstream 14486 37998455 ~ 37998703 (+)
G100978 NA non-coding upstream 39998 37956604 ~ 37973191 (+)
G100963 NA non-coding upstream 139454 37871456 ~ 37873735 (+)
G100956 NA non-coding upstream 173658 37838902 ~ 37839531 (+)
G100940 NA non-coding upstream 195432 37817373 ~ 37817757 (+)
G101080 NA non-coding downstream 30770 38046044 ~ 38046823 (+)
G101081 NA non-coding downstream 42314 38057588 ~ 38062672 (+)
G101130 NA non-coding downstream 185295 38200569 ~ 38201905 (+)
LOC120565354 NA non-coding downstream 232254 38247528 ~ 38248312 (+)
G101208 NA non-coding downstream 353423 38368697 ~ 38370401 (+)
G100843 NA other upstream 523117 37463914 ~ 37490072 (+)
prrc2c NA other upstream 1054829 36932655 ~ 36958360 (+)
G100671 NA other upstream 1314320 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 1401443 36596041 ~ 36611746 (+)
smim24 NA other upstream 1478607 36495484 ~ 36534582 (+)
usp46 usp46 other downstream 851161 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 1308310 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 1438846 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 1545787 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 1678638 39693912 ~ 39740277 (+)

Expression


Co-expression Network