LOC120565067


Basic Information

Item Value
gene id LOC120565067
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24309609 ~ 24365175 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640189.1
GGGAAGGAGCGAGCGTGAGAGAAAACATCACGAAGTCGAAAAACCAAGATAAAATATCAGCAGTGTGTTAAGACCCCAACACTATTTTACCTAATTTCACTTAATTAGGTTGCACGTTAgtgagtctgtgtgtatttttaaagTCTGTGAGTTACTTAAAAATGCTTAGCTGTTGGCCGCTATGCTAGCCGAAGTAACGATGCTAACCGCATAGCTAGGCTGCTAACAATAGTTTCTAGAAGTTAATTTATGTGGCTACTAAAAAAAGTGACCCAAGAATGAGTGTGAGCTTGGACCCAACACAGTATTCAAGTTCAGATGGGCCCCACGGTGACCAGGAAAGCTGTGTGGGCTCTCAGATGAAGACACCCGTTGGACTGATGAGATGTTAGATAGCGCCATTTGTGACCAGAAAAGCCCTTGGGTGCCTCTGAGGAAGATTTCAGCCTGCTGTCACCTTCTACTCTCCGACACAAGTCGTCTCTCCAGGACAGTAACAGAACTgcgGTGTGATGGcgctgcagcagagagagaaagatctgGGTGACCATCTGAAACCAATTATGGCGCCGCTGCAGCCACCCAGAAACTCAGTGACGGATGGGGATCTTGTATTTATAGCTGGGGCTTTATCTCCATTCTACGATCCAAGACCAAGCTGCCTGGAGTCCCATGGGTGATCTGCCCTGTCCCCTCTAATCTGGCCGAGCTGCTGCGATTCCATCACTCCCGGCGAACCACACAGAAAGATTAGTCAGACTCTACGTACAACAGATGTGTCCAACActtgatttgtgtgtgttttattgacTCTGGCCATCTGTTAATACAGTTGCTGGTTCCTCCTCATGTGTTTGTTGATGCACACAGACAGGGGAGCTGAGTGCCAGAAGAAACATTCAGCAaaggagagatgagagagagatagaaggacagagagagagaatggatTTAGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640189.1 True 958 lncRNA 0.47 3 24309609 24365175

Neighbor

gene id symbol gene type direction distance location
foxd2 LOC104918470,LOC103372816,LOC100707784 coding upstream 20920 24287104 ~ 24288689 (+)
foxe3 foxe3,LOC104952243,LOC102794361 coding upstream 28545 24278396 ~ 24281064 (+)
ankrd24 ankrd24,LOC106918341,LOC106947862,LOC102780339,LOC103142601 coding upstream 126581 24168358 ~ 24183028 (+)
s1pr3a LOC104942240,LOC103398206 coding upstream 172095 24133664 ~ 24137514 (+)
tle2b LOC103463550,LOC105936873,LOC103142606,LOC108230720,LOC101484064,LOC102310211,LOC101064354 coding upstream 311225 23913948 ~ 23998384 (+)
scyl3 scyl3 coding downstream 116528 24481703 ~ 24488751 (+)
sele NA coding downstream 150259 24515434 ~ 24519540 (+)
LOC120565835 NA coding downstream 155459 24520634 ~ 24524358 (+)
LOC120566076 NA coding downstream 159298 24524473 ~ 24531588 (+)
atf6 NA coding downstream 225151 24590326 ~ 24627700 (+)
G97807 sac3d1 non-coding upstream 53528 24254470 ~ 24256081 (+)
G97789 NA non-coding upstream 95750 24211860 ~ 24213859 (+)
G97788 odf3l2,LOC104949085 non-coding upstream 100319 24208229 ~ 24209290 (+)
G97728 NA non-coding upstream 218290 24090543 ~ 24091319 (+)
G97702 NA non-coding upstream 309387 23998401 ~ 24000222 (+)
G97896 LOC104918463,LOC104952282 non-coding downstream 146796 24511971 ~ 24513033 (+)
G97938 NA non-coding downstream 273291 24638466 ~ 24642085 (+)
G98014 LOC106904844,LOC106963772,LOC102314236,LOC103463589,LOC106513892,LOC102207185,LOC100706092 non-coding downstream 419621 24784796 ~ 24785342 (+)
G98015 NA non-coding downstream 422156 24787331 ~ 24787540 (+)
G98019 mknk1 non-coding downstream 468262 24833437 ~ 24835517 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 101468 24204341 ~ 24208141 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other upstream 659096 23631119 ~ 23650513 (+)
G97596 lpl,LOC108280930,LOC105906969 other upstream 831791 23474782 ~ 23477818 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 929234 23378731 ~ 23380375 (+)
pole4 NA other upstream 986125 23321464 ~ 23323484 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 383842 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 416743 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 487112 24852287 ~ 24873916 (+)
G98194 NA other downstream 1167650 25532825 ~ 25547089 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 1365050 25730225 ~ 25738789 (+)

Expression


Co-expression Network