LOC120565226


Basic Information

Item Value
gene id LOC120565226
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 20266651 ~ 20289381 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640207.1
agaagaagaagtgacTTTTTGAAAGTGGAGAATAAGTGTGCTAAAATTTCAACTCTTCCTCAGATGTCTACCTGCAAGCCAGCACCTTAGAAGAGGTGTTAGCCCTGCGATGAACTGGCAACTGGTCCGAGATGTTTTCCTGTCTCCGGCTGAACGTGGATTGAGAATAGACGCACAATAAATAAACCCTGATGAGGCATAAGCAGGACTCACAATTCACCAATAATGCCTTGGAAACATCTCAACTGATTGCATCAAGTTGTGCTGCTGATGCCCCACTGCTTTACACTCCAGTCCCTCCTCATTTTTTGCCCCAAACCCCTGATCCAACATCCTGCTTCAACATGAAACATGCATTATCAATTTCAGATAAATATCCTCCAAATGTCACGTCTGCCCTGCTCTTATTGTTTTCTGCTTGTTTTTatggacttcctgttttattttgatatccattgtttgtcttcattcacttcacttgtcttcctgcctttgtttgtttcccGCCTTTTTTGATTACCTGTCTCCTCCCTAATGTTATTCACCTGTGTCTAGTTGTCTTCCCCTCCCCCGTGTATATATACTCACCTGTGTTCACTTGTTCCCTGCCAGATTGTTGTTGAACCTTTTGTGTCACACTCTCCAGCGTTGTTCccagtgtttgtttgttctATGTTATTC

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640207.1 True 681 lncRNA 0.43 4 20266651 20289381

Neighbor

gene id symbol gene type direction distance location
adgrl2a adgrl2,LOC106923620 coding upstream 10057 20156410 ~ 20256594 (+)
cth cth coding upstream 680006 19574855 ~ 19586645 (+)
LOC120565772 srsf11,LOC103363396 coding upstream 737157 19520942 ~ 19529494 (+)
fam43a fam43a,LOC102785697 coding upstream 925595 19338866 ~ 19341056 (+)
htr2b htr2b coding upstream 1214683 19044010 ~ 19051968 (+)
samd13 samd13,LOC103130842 coding downstream 275594 20564975 ~ 20568112 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding downstream 287142 20576523 ~ 20582264 (+)
LOC120565357 NA coding downstream 293125 20582506 ~ 20587615 (+)
rpf1 rpf1 coding downstream 298917 20588298 ~ 20595439 (+)
spata1 spata1,LOC102789799 coding downstream 309201 20598582 ~ 20605337 (+)
G96653 NA non-coding upstream 217434 20047879 ~ 20049217 (+)
LOC120565691 NA non-coding upstream 219279 20047018 ~ 20047372 (+)
G96648 adgrl4 non-coding upstream 264526 20000828 ~ 20002125 (+)
G96616 NA non-coding upstream 515279 19751120 ~ 19751372 (+)
G96610 NA non-coding upstream 581566 19684150 ~ 19685085 (+)
LOC120565515 NA non-coding downstream 179172 20468553 ~ 20470747 (+)
G96692 NA non-coding downstream 185426 20474807 ~ 20485886 (+)
G96742 NA non-coding downstream 325551 20614932 ~ 20615202 (+)
G96753 NA non-coding downstream 382285 20671666 ~ 20674195 (+)
G96754 ssx2ip non-coding downstream 384876 20674257 ~ 20676737 (+)
G96513 NA other upstream 734974 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 1481015 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 1601538 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 2407240 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 3890202 16320494 ~ 16376449 (+)
prkacba prkacb other downstream 259618 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 1121955 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 1265513 21554894 ~ 21557731 (+)
G97093 NA other downstream 1401516 21690897 ~ 21782000 (+)
G97321 NA other downstream 1994265 22283646 ~ 22287272 (+)

Expression


Co-expression Network