LOC120565265


Basic Information

Item Value
gene id LOC120565265
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 40044182 ~ 40045506 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640213.1
TTTtggtgttataaccctatcaaaattcaacaaccaatagaatgccagctgtagtgttgaccaatgaaatgatccctgcCCCGTTGAAGATGCGTTCAATTTAcgttagaacgtctgttgagggcggctgctctGTAACCAAGTTTAGCTATGTAGCTACCCCCGCGCCGTCCattgctttattataagtatatgtcaacaatgtgcacagagtGGTCGatgcactttcacctgcacccgtcaggaaactgGAGAaagtccacaactacgagggtgtgactgaagtatccctgttgagctgcatcacagcacACTGGTCTATGCACTATGTGCAtgtatgtttcttgcttaaatccacacacaaccaggcctgggagagaaaattactgatatccacaaaaccaaatcagacaaggagcatactatataaagacaacagtggagagttgcTGGAtctgtctgtcctcaaagtgccagagatctacaaggacttcacacGTTTCTACACCATCAACTGcgtaatcaaagtgataaaagagagaacaaactaTTGTTTtatctgttgacatgaataggtgcctgtaatgtctgccaatatattcaatcaattcaataaatgttgataagtatcactgatatttcttaaatcattgtagtttttcagagcaataagagaTTATTAAAACAATGTTCATATTTGcgacaaattaaaaccctgatcaaggcaaatggtttttcattttccataacatttata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640213.1 True 757 lncRNA 0.39 3 40044182 40045506

Neighbor

gene id symbol gene type direction distance location
slc9a7 NA coding upstream 7862 40006247 ~ 40036320 (+)
gtpbp6 gtpbp6,LOC103356937,LOC102777366 coding upstream 80646 39959058 ~ 39963536 (+)
nit2 nit2 coding upstream 89928 39945687 ~ 39954254 (+)
tbc1d23 tbc1d23 coding upstream 104775 39923558 ~ 39939407 (+)
tomm70a tomm70 coding upstream 123392 39911630 ~ 39920790 (+)
tubgcp5 tubgcp5 coding downstream 6811 40052317 ~ 40069649 (+)
cyfip1 cyfip1 coding downstream 26536 40072042 ~ 40125946 (+)
herc2 LOC103356925 coding downstream 93927 40139433 ~ 40197238 (+)
oca2 oca2 coding downstream 160520 40206026 ~ 40260251 (+)
gabrb3 gabrb3,LOC106914751,LOC103365202 coding downstream 372487 40417993 ~ 40486609 (+)
G101666 NA non-coding upstream 25489 39984470 ~ 40018693 (+)
G101674 rp2 non-coding upstream 40343 40000905 ~ 40003839 (+)
G101600 NA non-coding upstream 135672 39905036 ~ 39908510 (+)
G101579 NA non-coding upstream 172009 39871656 ~ 39872173 (+)
G101519 LOC103356959,LOC104928288 non-coding upstream 363656 39680078 ~ 39680526 (+)
G101687 nipa1,LOC102781059 non-coding downstream 84295 40129801 ~ 40133354 (+)
G101688 NA non-coding downstream 89701 40135207 ~ 40135500 (+)
G101796 NA non-coding downstream 214857 40260363 ~ 40260609 (+)
G101823 NA non-coding downstream 441285 40486791 ~ 40487021 (+)
G101831 NA non-coding downstream 461994 40507500 ~ 40507759 (+)
LOC120565298 cdkl5,LOC103356958 other upstream 303905 39693912 ~ 39740277 (+)
reps2 reps2,LOC102792668 other upstream 451420 39561061 ~ 39592762 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 579732 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 682449 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 1163577 38866435 ~ 38880605 (+)
atp10a atp10a other downstream 469587 40515093 ~ 40559895 (+)
G102165 NA other downstream 1407168 41452674 ~ 41453306 (+)

Expression


Co-expression Network