LOC120565370


Basic Information

Item Value
gene id LOC120565370
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 15222133 ~ 15268185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640227.1
CCCAATGTGATGTTAGGTGCGGTCACAGAGCTCATCCGAACTGGCACTATTTCTGGACTCAGCCAGCTGCCGAGTCCTAAACTTACTTTCCTGGACCAGTTAATGCTGGCTGCTGTCTTCACAGGGGGACGAGCTGAACAAAAACAACTCAGTCATGACATCACAGCCAGTCCTTGTTCCTCAGCACTGAGGCGTCATGTGGAAGAGGAGATAGACAAAAGGAAGAGAAAATAAAGCGAGCAAAATTATGTTGTACATTACTCAGACCCATGCAAGGAACAACTCCAAGACATGCAAAGACAGAACAGAGACTGATGCAACTATTCAGCCCTAAAGACAAAACATAACTGTATTTGGCCATGGACGAATCCGCACACTCAAACACCCAACAAACTCCCTGTGTTTCCCTCCAACACAGCACCTAACAAAGCCTTATGAAGTCCTCCAAAACACTCCGGTAATACGCCCTCCTATTCAGATACCTTGGTGCTGGGGGGATAAGCAACTTTGACTTGTTTTGGTTTGTCTGCCACCGTTCCCTTCAGTCTTGTTTTGATCTGTTTGGAATGTGACCCGATactgattttaaatgtaaaaaggaaaaaacatctGAACAACTGATTTCCTCACGGCAACCTTGACGAGTCTTTTCTGCTCAGACGTGTCCTGATTGGATACGTTTTGTATCCAGTTTTATCTACAAAAGAAACAGGTTACAAGACTGACTGATTCTTCTTTAACACAAAATATTTGAAGGATTACATGGTTAGACAGCTCAGTTACAAGAAAGGCTATAAGAGGAAGTCTGGTATCAATAGTCCTTGGTCTGCTGACTGTTTGCCAACCACAGTGTCTCTAAACAATGTAATTCTAACGCGCATTATTACATTGTAACTCCAAATGCACTGCAGACACGGTACAAAAACACCTACAGTAATAATAGATACAAGAGTATCCAGGGTCACGTTTACAAAATGTGGTCATAAAGCACCATTAGGGCCATATGTAACACACTGTAAATGTGCAGTAATAGAATGTATACTAAAAAAGTAAgggacatatactgtacatgttaatTCTTACCTGTATACTACTTTGTTTTAtccattatatatttatttgtaattCTTGTTTTTACTCTTATTCCAAATTTAATTTTTCTATATACACCAGCCTTTTTAACATAGCCTAAGTAGCATGCCACCCTTGATTTCACTACACATATTGTATAAGGATCCTTGAAACCTGAATCTAAGTGTTGAGTAAATGTTTGCATCTTCCTGTGAACAAAAAACAAGGACTTCTCTTCAAAGTCTGTTTGTTGAAACTCAGAGTTGGCATGACATGAAGCATATGACCATTGTCTAATTGAGGCCTCATGTTTAACTTTACTCATTTTATCTTGAAAACTATAACTTTGAACAGTGGATTCCTCAGTATTAGAAGTAAGGCCAATGTGAGGAAAACAGATGGATTTTGTATTCATATTTGAATCACTGTAAAAATCCACCAATTTACTTTCAAAGACTGCTGacacaatattttgtttttgtcaaatcTACAAACTTCAGAGACTTTTCGAGGTCCTTGTGCACcttgttatattgttatatgtTAAGTGTATCTCTGTTCTAATGAGCTTTGAATCTCTGTGTTTCATAACACTTCTAGTGTTACCAAATTGGCATATGACATCAAGCGACTTTGGGAATAAAGTAACACTCATATGCCTAGCTGGCATGTTCTTGGCACAATACTGACTACATCCATTTTTTTGGTTCTTGGTCATAATTTTCAAGAACTATATGTGCTTATTTTGCACTAATTGGTAAAGACAGTTCAGTCCGACTAGAGTCATCTATGATCTTGCCATTTCACAGATGGCAACATAAAGGATTCAACTCGATGAACCGCACAGCCAACGTTAGCCAGACTATGGCGAGTTAGCAAAAATTCTGACTACATCCTGAATAGTAATGATATTGTTAGTAGTGTTGGTTCTCTGGTTCAGGAGGCCTACTACAGTTTATACTGGAGACACTTATGTGATCGGTGTTTGTCTATCTTTTGACACCCTTCAAGATGTTAAAGAGAAGGTTTTTTTACATGGAAGCTGGGAAACAACTTGAGCCCTTGCAAACAGGAACATACAGTAGTTTGACGTCTTTGGACTTAACCACCACACAAGACAGTCATGTAATATCCAGAAACTTCTTCATTTACTTGAAAAACACATAAGCTTctcgtgtgtgtatgagtcagcTCATTGCTCCATAGTGCCACATCAGCAAATCTATGTTAATacaaagatatatatattattgatttaaaaggactgatttcttttttttatttctct
>XR_005640228.1
TTGTGCCCCACTTCCACCATCATCAAAGCAGCCTCAGATTCAGCTCCAGGTCCAGTGAGCCCTGCAGGAATCCTGCAGCAGATAACATCTATCAGGTCTTCACTTGGGGGACGAGCTGAACAAAAACAACTCAGTCATGACATCACAGCCAGTCCTTGTTCCTCAGCACTGAGGCGTCATGTGGAAGAGGAGATAGACAAAAGGAAGAGAAAATAAAGCGAGCAAAATTATGTTGTACATTACTCAGACCCATGCAAGGAACAACTCCAAGACATGCAAAGACAGAACAGAGACTGATGCAACTATTCAGCCCTAAAGACAAAACATAACTGTATTTGGCCATGGACGAATCCGCACACTCAAACACCCAACAAACTCCCTGTGTTTCCCTCCAACACAGCACCTAACAAAGCCTTATGAAGTCCTCCAAAACACTCCGGTAATACGCCCTCCTATTCAGATACCTTGGTGCTGGGGGGATAAGCAACTTTGACTTGTTTTGGTTTGTCTGCCACCGTTCCCTTCAGTCTTGTTTTGATCTGTTTGGAATGTGACCCGATactgattttaaatgtaaaaaggaaaaaacatctGAACAACTGATTTCCTCACGGCAACCTTGACGAGTCTTTTCTGCTCAGACGTGTCCTGATTGGATACGTTTTGTATCCAGTTTTATCTACAAAAGAAACAGGTTACAAGACTGACTGATTCTTCTTTAACACAAAATATTTGAAGGATTACATGGTTAGACAGCTCAGTTACAAGAAAGGCTATAAGAGGAAGTCTGGTATCAATAGTCCTTGGTCTGCTGACTGTTTGCCAACCACAGTGTCTCTAAACAATGTAATTCTAACGCGCATTATTACATTGTAACTCCAAATGCACTGCAGACACGGTACAAAAACACCTACAGTAATAATAGATACAAGAGTATCCAGGGTCACGTTTACAAAATGTGGTCATAAAGCACCATTAGGGCCATATGTAACACACTGTAAATGTGCAGTAATAGAATGTATACTAAAAAAGTAAgggacatatactgtacatgttaatTCTTACCTGTATACTACTTTGTTTTAtccattatatatttatttgtaattCTTGTTTTTACTCTTATTCCAAATTTAATTTTTCTATATACACCAGCCTTTTTAACATAGCCTAAGTAGCATGCCACCCTTGATTTCACTACACATATTGTATAAGGATCCTTGAAACCTGAATCTAAGTGTTGAGTAAATGTTTGCATCTTCCTGTGAACAAAAAACAAGGACTTCTCTTCAAAGTCTGTTTGTTGAAACTCAGAGTTGGCATGACATGAAGCATATGACCATTGTCTAATTGAGGCCTCATGTTTAACTTTACTCATTTTATCTTGAAAACTATAACTTTGAACAGTGGATTCCTCAGTATTAGAAGTAAGGCCAATGTGAGGAAAACAGATGGATTTTGTATTCATATTTGAATCACTGTAAAAATCCACCAATTTACTTTCAAAGACTGCTGacacaatattttgtttttgtcaaatcTACAAACTTCAGAGACTTTTCGAGGTCCTTGTGCACcttgttatattgttatatgtTAAGTGTATCTCTGTTCTAATGAGCTTTGAATCTCTGTGTTTCATAACACTTCTAGTGTTACCAAATTGGCATATGACATCAAGCGACTTTGGGAATAAAGTAACACTCATATGCCTAGCTGGCATGTTCTTGGCACAATACTGACTACATCCATTTTTTTGGTTCTTGGTCATAATTTTCAAGAACTATATGTGCTTATTTTGCACTAATTGGTAAAGACAGTTCAGTCCGACTAGAGTCATCTATGATCTTGCCATTTCACAGATGGCAACATAAAGGATTCAACTCGATGAACCGCACAGCCAACGTTAGCCAGACTATGGCGAGTTAGCAAAAATTCTGACTACATCCTGAATAGTAATGATATTGTTAGTAGTGTTGGTTCTCTGGTTCAGGAGGCCTACTACAGTTTATACTGGAGACACTTATGTGATCGGTGTTTGTCTATCTTTTGACACCCTTCAAGATGTTAAAGAGAAGGTTTTTTTACATGGAAGCTGGGAAACAACTTGAGCCCTTGCAAACAGGAACATACAGTAGTTTGACGTCTTTGGACTTAACCACCACACAAGACAGTCATGTAATATCCAGAAACTTCTTCATTTACTTGAAAAACACATAAGCTTctcgtgtgtgtatgagtcagcTCATTGCTCCATAGTGCCACATCAGCAAATCTATGTTAATacaaagatatatatattattgatttaaaaggactgatttcttttttttatttctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640227.1 True 2359 lncRNA 0.38 3 15231371 15268185
XR_005640228.1 False 2341 lncRNA 0.38 3 15222133 15268185

Neighbor

gene id symbol gene type direction distance location
rabgap1l rabgap1l,LOC106574055 coding upstream 68556 15027011 ~ 15153577 (+)
gpr52 gpr52,LOC104944265 coding upstream 143662 15072598 ~ 15078471 (+)
fam163ab fam163a,LOC102222863 coding upstream 195814 15001169 ~ 15026319 (+)
tdrd5 NA coding upstream 237456 14966266 ~ 14984677 (+)
axdnd1 axdnd1 coding upstream 260896 14949168 ~ 14961237 (+)
uba52 uba52,LOC100136537,LOC100135798,LOC100194659 coding downstream 25410 15293595 ~ 15295680 (+)
ddx49 ddx49 coding downstream 75481 15343666 ~ 15350593 (+)
lsm4 lsm4,LOC106613629 coding downstream 111330 15379515 ~ 15382779 (+)
LOC120566177 jund,LOC104930914,LOC103360786,LOC101484003 coding downstream 202462 15470647 ~ 15472763 (+)
mpv17l2 NA coding downstream 229841 15498026 ~ 15505221 (+)
G95496 crb1,LOC102787887,LOC102294192,LOC103365562 non-coding upstream 290052 14930512 ~ 14932081 (+)
G95493 NA non-coding upstream 296530 14923952 ~ 14925603 (+)
G95492 NA non-coding upstream 342846 14879082 ~ 14879287 (+)
LOC120565827 NA non-coding upstream 430527 14787068 ~ 14791606 (+)
G95447 NA non-coding upstream 583087 14546536 ~ 14639046 (+)
G95640 NA non-coding downstream 28099 15296284 ~ 15297193 (+)
G95681 NA non-coding downstream 119813 15387998 ~ 15389142 (+)
G95710 NA non-coding downstream 206409 15474594 ~ 15478157 (+)
G95729 NA non-coding downstream 364728 15632913 ~ 15633568 (+)
G95731 ifi30 non-coding downstream 366313 15634498 ~ 15635947 (+)
dennd1b NA other upstream 298288 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 517780 14689382 ~ 14704353 (+)
G95460 NA other upstream 600720 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 1822389 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 1839386 13379398 ~ 13382747 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 255744 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 1021638 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 1052309 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 2587446 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 3378518 18646703 ~ 18665113 (+)

Expression


Co-expression Network