LOC120565406


Basic Information

Item Value
gene id LOC120565406
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 4332961 ~ 4340598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640232.1
GTCTCTTTTGCCCCTTTGTCACCAAAGCTGAACATCCAGTATGGACTGCTTCAGCTCATATGCTCCAGCTGCACAGAGAGCTGCACAGAGCTGCACAGAGAGCCTCCCTGCTCTATGACAGCAACCATGATACCTGCTGGTCTGCTGAGGTTGTTCCTGAGTCGGCCAAACCTCTCATACATCACCTCTG
>XR_005640233.1
AGATGCGAAGCGGCCTCTCTACCTCCAGCTCATCCCTAGACAGCATACAGGACAGCAACATAGAATACACAGAATACCAATGAATGTATGGACTGCTTCAGCTCATATGCTCCAGCTGCACAGAGAGCTGCACAGAGCTGCACAGAGAGCCTCCCTGCTCTATGACAGCAACCATGATACCTGCTGGTCTGCTGAGGTTGTTCCTGAGTCGGCCAAACCTCTCATACATCACCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640232.1 False 190 lncRNA 0.53 2 4333311 4340598
XR_005640233.1 True 237 lncRNA 0.51 2 4332961 4340598

Neighbor

gene id symbol gene type direction distance location
LOC120565402 LOC106958509,LOC103391927,LOC106963510,LOC107690788 coding upstream 171519 4160909 ~ 4161442 (+)
LOC120565404 si:ch73-368j24.3,LOC108247233,LOC102383489,LOC105916187,LOC107569590 coding upstream 181958 4146493 ~ 4151003 (+)
LOC120565396 LOC108262407,LOC104935308,LOC104932967 coding upstream 190855 4141578 ~ 4142106 (+)
LOC120565394 LOC104935534,LOC103395676,LOC104932847,LOC103395770 coding upstream 200388 4131863 ~ 4132573 (+)
LOC120565880 LOC104960898 coding upstream 478151 3826863 ~ 3854810 (+)
LOC120565392 LOC103395674,LOC105891059,LOC101167724,LOC101068541,LOC105888650,LOC105896821,LOC106527799 coding downstream 4061 4344659 ~ 4345129 (+)
LOC120565398 LOC108262407,LOC104935308,LOC104932967 coding downstream 25524 4366122 ~ 4366561 (+)
LOC120564977 zgc:110434,LOC102204254,LOC103462478,LOC107386469,LOC101485372,LOC103381127,LOC103379246,LOC103395676 coding downstream 33228 4373826 ~ 4374754 (+)
prpf38a prpf38a,LOC107731643,LOC107684051 coding downstream 68045 4408643 ~ 4419781 (+)
LOC120565669 NA coding downstream 98742 4439340 ~ 4443524 (+)
G93170 NA non-coding upstream 33203 4281451 ~ 4299758 (+)
G93169 NA non-coding upstream 49666 4282869 ~ 4283295 (+)
LOC120565405 NA non-coding upstream 67596 4235808 ~ 4265365 (+)
G93151 NA non-coding upstream 134989 4168321 ~ 4197972 (+)
G93149 NA non-coding upstream 145499 4179115 ~ 4187462 (+)
G93191 NA non-coding downstream 14144 4354742 ~ 4376530 (+)
G93281 NA non-coding downstream 72663 4413261 ~ 4413921 (+)
G93294 NA non-coding downstream 119673 4460271 ~ 4465434 (+)
G93293 NA non-coding downstream 120531 4461129 ~ 4467311 (+)
G93288 NA non-coding downstream 155455 4496053 ~ 4502052 (+)
LOC120565391 NA other upstream 19446 4284755 ~ 4313515 (+)
G93150 NA other upstream 115135 4174602 ~ 4217826 (+)
frem1b LOC100693369,LOC101486624,LOC102206675,LOC102294239 other upstream 509179 3714919 ~ 3823782 (+)
G92848 NA other upstream 726136 3600978 ~ 3606825 (+)
LOC120565459 NA other upstream 737573 3540034 ~ 3595388 (+)
trmt1l trmt1l other downstream 344626 4685224 ~ 4713233 (+)
G93613 NA other downstream 1694771 6035369 ~ 6051520 (+)
G93638 NA other downstream 1861487 6202085 ~ 6214017 (+)
rhpn1 rhpn1 other downstream 2014294 6354892 ~ 6381598 (+)
G93938 NA other downstream 3009212 7349810 ~ 7350587 (+)

Expression


Co-expression Network