LOC120565893


Basic Information

Item Value
gene id LOC120565893
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 7892224 ~ 7895718 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640303.1
CTCATCCTGATCACACAATCACCGCTCCTCCTtgcttcctcctccttcccgTTGCCATTCACTAGCTGGAGAAACACGCGTTTTATCCACCGGCCTGGTCTCACACCGACGATACAGAAAAAACAGCAAATTTGACATAACGTGTTGAGCATTTGTCTTTGAATACTAGTTTAAGCTCAACAACTTTACCCAGGAAGGTGAGTTAAGAGCTTGAATAAGATTTTCTAATAAACATTAAGCAGGAAATGCCTTCCCCAAAACAGTGTAACAATGGTGTATTAGTGTTTGATATTCAATCAGTATCAATATTACTAACATCCACATGGTGAAACATTAAGGGAATGCATTTCCTGTGTTGCATCAGGATAATTTAACATCGTGAAAAAGGCATGGCTCGTGCAATGTGTGATTTGTTAGCAGAGCAAAACCTCAATACCTACCGGATTAATTTGCTTGCATGAACATGTTAGTGTTTCTCACAAATCCATCAATGTCAATGAGTGTGATttcgtttttcttttaatgtttttctgtaGACTTGTTTACACCCTTTCCTTTTTGTGCATGCTGGCATGTCATTGTGTCATTTTTCAAGTCAACACTAATTGAATTTTTACCAAGAACAGTTTACAATAGAGTCACAGTGATGGGAAAAATTAGTGTTGGTTAGACATCGGACATTTGATTTTTGAATTTATGTTGAAATCTATAATGCTCTGACTAGCTATATGCTGTGATAAACCAGGGTCACTTGGTGCTGCTTGAtctgtattattatataaactTCCTCTGAATATACATTTGATAAATGCCTTTGCAGGATGAGCATAATAACGATGGGCTAAAGGGTTTTATTGGCACTTCAGAAAGCTACTGTCATTTAAAAACATAGAATAAGCTAAAATCAGAAATTCCATGATGTTAAATTAATTTCCCCATCTGGCTAATTATAACTTAAAAgctgtgtttcctttttttaatgaataCTGTAGTAGCAATTACTGTTATGTACTTGAAAGCAGTCGTCCCAAGCAATGGCTTTATAAGCAATCTTGGGCTTTTATAAGGATTTATATGAAAGTGTAAATTACTTGTTGGTTTGGGAAATCATTGTGTAGCTTCGCTTATAATCGACTGCCATTTAATCAAAAGCGTTAGCACCCTGGTGTTAACTTTCCTTTACTTGCATATATTCTTGAATGTGAGCCAAGTTGGGACATTTCCTTTACAAATTTACAAGCAAGTAGATTTCATTCACTAAACAATTTTAGTTTATCTGCATGGGTTTCTTCAAATTTTCTGCATGCTGCTTGCTTTTCTCTGGGACTGATTTGTAGACTCTTGACTGTTGAGACTAGAGCTGGCCCGATACCGTTTTTTGcttaccgattccgatacctgaacttgcgtatcggccgataccaagtactgatccgataccagtgtgtcatatatttgattatgttttaacagctgtgtact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640303.1 True 1482 lncRNA 0.37 3 7892224 7895718

Neighbor

gene id symbol gene type direction distance location
LOC120565295 tsta3,LOC104953080 coding upstream 18238 7868591 ~ 7873986 (+)
LOC120565646 LOC103354728,LOC102290039,LOC107394705 coding upstream 24496 7862214 ~ 7867728 (+)
LOC120564954 foxc1,LOC104932399,LOC104963658 coding upstream 286594 7603460 ~ 7605630 (+)
foxf2b foxf2,LOC102792585 coding upstream 301925 7586141 ~ 7590299 (+)
foxq1b foxq1,LOC104946962 coding upstream 310387 7580192 ~ 7581837 (+)
rgs4 NA coding downstream 312735 8208453 ~ 8214500 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding downstream 1125799 9021517 ~ 9033680 (+)
LOC120564878 NA coding downstream 1161623 9057341 ~ 9062036 (+)
LOC120566074 LOC104935955,LOC103367504 coding downstream 1171460 9067178 ~ 9070676 (+)
LOC120564889 rgs2,LOC103367537 coding downstream 1185141 9080859 ~ 9083857 (+)
G93986 NA non-coding upstream 276797 7557254 ~ 7615427 (+)
G93985 NA non-coding upstream 366881 7524990 ~ 7525343 (+)
LOC120566054 NA non-coding upstream 496946 7394373 ~ 7395278 (+)
G93933 NA non-coding upstream 564538 7327171 ~ 7327686 (+)
G93932 LOC103399850 non-coding upstream 568798 7322066 ~ 7323426 (+)
G94056 LOC104961454 non-coding downstream 57697 7953415 ~ 7955102 (+)
G94057 NA non-coding downstream 95570 7991288 ~ 7991555 (+)
G94059 NA non-coding downstream 207275 8102993 ~ 8103363 (+)
G94060 NA non-coding downstream 207772 8103490 ~ 8103804 (+)
G94062 NA non-coding downstream 254744 8150462 ~ 8150870 (+)
LOC120565294 pycrl other upstream 2047 7878919 ~ 7890177 (+)
G93938 NA other upstream 541637 7349810 ~ 7350587 (+)
rhpn1 rhpn1 other upstream 1510626 6354892 ~ 6381598 (+)
G93638 NA other upstream 1678207 6202085 ~ 6214017 (+)
G93613 NA other upstream 1840704 6035369 ~ 6051520 (+)
LOC120565614 NA other downstream 427 7896145 ~ 7905247 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other downstream 341652 8237370 ~ 8286436 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 1251444 9147162 ~ 9168877 (+)
LOC120566011 NA other downstream 1488787 9384505 ~ 9543535 (+)
G94239 NA other downstream 1656578 9552296 ~ 9557568 (+)

Expression


Co-expression Network