LOC120566015


Basic Information

Item Value
gene id LOC120566015
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9434721 ~ 9437621 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640321.1
ttgcAATGTGTACAGTCCCACAGGGCAGACCATGTTGTGAACCTCAGGGCTCCCCGAGGACTCTAACACACAGTAGTTCTGCTCAGGAGACGTTTGTCAAAGGACCATGAGTTTGTCTGTAATCCTCTTTCTCCAACTGTGGGGGATTGTGGAAGTCTCCTCATCACAGAATGGTTCACCATCGAGCTCTAACCCCCGCCTGCAGATGGAGGGGTTACAGTAATAGGTTTACCAGAAAATGACAATCCCATTCTTCCTGACCGCCCCCCTCGCATTCATCTGTGAAGGACCTGGGAAATATCTGAATGGCAGTTCAGTGCTGAGATGTGGTCAAGATGGACAGTGGGATCATCCATTCCCCACTTGTGAAGaaaactgcAAAGTCCCAGGTCTATCAGACGGCTTACAACTCCCCACACATGAACCAGGCGATCAACT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0052548 regulation of endopeptidase activity biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko00360 Phenylalanine metabolism
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640321.1 True 438 lncRNA 0.50 3 9434721 9437621

Neighbor

gene id symbol gene type direction distance location
LOC120564889 rgs2,LOC103367537 coding upstream 350864 9080859 ~ 9083857 (+)
LOC120566074 LOC104935955,LOC103367504 coding upstream 364045 9067178 ~ 9070676 (+)
LOC120564878 NA coding upstream 372685 9057341 ~ 9062036 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding upstream 401041 9021517 ~ 9033680 (+)
rgs4 NA coding upstream 1220221 8208453 ~ 8214500 (+)
LOC120566014 NA coding downstream 24824 9462445 ~ 9473374 (+)
trnah-gug_12 NA coding downstream 134677 9572298 ~ 9572369 (+)
depdc1a depdc1 coding downstream 137637 9575258 ~ 9587669 (+)
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding downstream 151535 9589156 ~ 9603575 (+)
fnbp1l fnbp1l,LOC102783810 coding downstream 177174 9614795 ~ 9671788 (+)
G94201 NA non-coding upstream 264964 9169319 ~ 9169757 (+)
G94192 uchl5 non-coding upstream 338429 9089828 ~ 9096292 (+)
G94169 NA non-coding upstream 433015 9001456 ~ 9001706 (+)
G94167 NA non-coding upstream 434261 9000163 ~ 9000460 (+)
G94153 NA non-coding upstream 781297 8653056 ~ 8653424 (+)
G94232 NA non-coding downstream 46382 9484003 ~ 9485965 (+)
LOC120566016 NA non-coding downstream 56360 9493981 ~ 9495357 (+)
G94231 NA non-coding downstream 102916 9540537 ~ 9541059 (+)
G94238 NA non-coding downstream 110093 9547714 ~ 9551691 (+)
G94259 NA non-coding downstream 224511 9662132 ~ 9679737 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 265844 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1148285 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1529474 7896145 ~ 7905247 (+)
LOC120565294 pycrl other upstream 1544544 7878919 ~ 7890177 (+)
G93938 NA other upstream 2084134 7349810 ~ 7350587 (+)
G94239 NA other downstream 114675 9552296 ~ 9557568 (+)
G94281 NA other downstream 380000 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 406650 9844271 ~ 9846275 (+)
G94376 NA other downstream 464664 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 495992 9933613 ~ 9948237 (+)

Expression


Co-expression Network