LOC120566117


Basic Information

Item Value
gene id LOC120566117
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30924279 ~ 30925498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640338.1
TCCTGCACCCCCACATTATACCCCGGCAGAAGAGCTGGCCCTTGGGCTAAATGTGAACCGACCCGTTGTGGAGGGCATCCCTGGGGGCAGCTCTTCCTTAGACCTACAGCCAAGGACCAGTAACAGCAACACCTTAATTACAGTTTTACATAATACACCAACACTTTTACCTGTTCCCAAGGAAGTGGTGGCTGAAATATGTGCAGACAGTGAAGAAACCCTCTCAGATGACTGTCCTTTGGAGGAAGTACTTGTAAGTGCataaataactttattttatttctagttGTGTGCATATTATGTCTGACTGCAATATGAGTTGCAGGAGGAAACGCCTACAGACAGGCCTACAGCACGAAGTGATACAGAGGGTGATATCCGTACCCTATATAAACGGAATCTTCAACAGAAAATTGAGTATTTTgaccttaaaaaacaaaaattaaggGGAGAAATAGAACTTGACATCTTAAAGAAGACAAAACTGGCACTAGAGATTGAGTTGCTTCAAAAGGAACTTCAGAGTAAGTGCTAAAACACTATTTTTCACAAAGAGTACTATTGCTAACCTTGGATAACAATATATCTTATTGCAGGCAAAAGATGACCATCACTGGCTTATCAAGACAAACAATAATTGAAATAAAACTCAATGAACTAAGCATGTTGTCTTGTCTTCtattattcatttaatgaaGGTTTTAAATTATTGTTTGTGCTGGTTGCACAAAGTCCAGTCTGTCAGGAAATCGTGTACATTTTCCTTGTAGGAAAAGCAAGGTTTTTCGTTTTTGGGTGCGTTTTGTGCAGGTGAAATGAGCAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640338.1 True 826 lncRNA 0.40 4 30924279 30925498

Neighbor

gene id symbol gene type direction distance location
magoh magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 87652 30832801 ~ 30836627 (+)
uck2a uck2,LOC100698935,LOC102786757 coding upstream 95008 30824223 ~ 30829271 (+)
LOC120566104 pbx1,LOC104964292,LOC108272157,LOC103479586 coding upstream 129450 30727013 ~ 30794829 (+)
sec16b LOC104942848 coding upstream 365125 30541357 ~ 30559154 (+)
gng12b NA coding upstream 388406 30529968 ~ 30535873 (+)
akr1a1b akr1a1,LOC102789595 coding downstream 8410 30933908 ~ 30945625 (+)
uhmk1 uhmk1 coding downstream 478275 31403773 ~ 31513916 (+)
mcf2l2 NA coding downstream 857728 31783226 ~ 32159445 (+)
ect2 ect2,LOC102798372 coding downstream 1295535 32221033 ~ 32411447 (+)
si:ch211-51h4.2 LOC102206538,LOC102309665,LOC102076398 coding downstream 2846948 33772446 ~ 33875096 (+)
G99591 NA non-coding upstream 25893 30898163 ~ 30898386 (+)
G99579 NA non-coding upstream 35676 30888052 ~ 30888603 (+)
G99578 NA non-coding upstream 38308 30885685 ~ 30885971 (+)
G99577 NA non-coding upstream 39094 30884264 ~ 30885185 (+)
G99576 NA non-coding upstream 41013 30882378 ~ 30883266 (+)
G99597 NA non-coding downstream 20290 30945788 ~ 30946089 (+)
LOC120566113 NA non-coding downstream 97503 31023001 ~ 31025476 (+)
G99651 NA non-coding downstream 120407 31045905 ~ 31046300 (+)
G99658 NA non-coding downstream 137113 31062611 ~ 31062864 (+)
G99677 NA non-coding downstream 250292 31175790 ~ 31176024 (+)
G99545 NA other upstream 113043 30810518 ~ 30811236 (+)
si:ch73-389b16.1 ccdc18 other upstream 494988 30427503 ~ 30429291 (+)
G99297 NA other upstream 1259189 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 2058792 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 2149726 28772362 ~ 28774553 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 170383 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 688391 31613889 ~ 31643446 (+)
G99791 NA other downstream 697200 31622698 ~ 31625796 (+)
G99803 NA other downstream 704318 31629816 ~ 31631501 (+)
LOC120565823 NA other downstream 836494 31761992 ~ 31767539 (+)

Expression


Co-expression Network