XLOC_004696


Basic Information

Item Value
gene id XLOC_004696
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22258962 ~ 22304841 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010734
CTGATGATCCTAAGGGGAAAAAAGTGGGGAGAGAAAAAGATATGTACCTTAGGGAAGAACCTCAGTAAGAGGGAGGGAATCAGAGGACGAGTAGGAgcgtgtgtgcgagtgtgtgaaaGAGACACTTACTCTCCTAACTACTACTGGAAGACACACACTTTTCTCACCCAACTCAAAGCAGCAGCAAACCTTggagaattgttttatttttgttttttcgcgaacccccccaaaaaaaattccTAATTATTCTCTCAAGCATCCATCTTTGCCTTGCCGGGATTTAATTTTCACCCCCTCTCTAGGAATCCTATGTACTGATCAATAGACCCTTTCCATCCACACAAGACATACCTCATGGATTTGTACCTGGTTGGATTTCTCATGTGCATGTGGTTCTCCAGCTCTCGGGTGCTTGGAGGCTATCCCATCTGGTG
>TCONS_00009300
CTGATGATCCTAAGGGGAAAAAAGTGGGGAGAGAAAAAGATATGTACCTTAGGGAAGAACCTCAGTAAGAGGGAGGGAATCAGAGGACGAGTAGGAgcgtgtgtgcgagtgtgtgaaaGAGACACTTACTCTCCTAACTACTACTGGAAGACACACACTTTTCTCACCCAACTCAAAGCAGCAGCAAACCTTggagaattgttttatttttgttttttcgcgaacccccccaaaaaaaattccTAATTATTCTCTCAAGCATCCATCTTTGCCTTGCCGGGATTTAATTTTCACCCCCTCTCTAGGAATCCTATGTACTGATCAATAGACCCTTTCCATCCACACAAGACATACCTCATGGATTTGTACCTGGTTGGATTTCTCATGTGCATGTGGTTCTCCAGCTCTCGGGTGCTTGGAGGCTATCCCATCTGGTGGTCCCTGGCCCTTGGGCAGCAGTACTCATCCATTGGATCCCAACCCATCCTGTGTGGCTCCATACCTGGCCTGGTGCCAAAACAGCTGCGCTTCTGCCGCAATTACATAGAGATCATGCCCAGTGTAGCGGAAGGAGTCAAACTGGGTATCCAGGAGTGTCAGCACCAGTTCCGTGGTCGCAGGTGGAACTGCACCACTATCAAGGACAGTCTAGCAATATTTGGACCAGTGCTTGATAAAGCTACAAGGGAATCTGCATTTGTTCATGCGATTGCCTCAGCTGGAGTAGCATTTGCAGTAACCCGTTCATGTGCAGAGGGGACCTCCACTATGTGTGGCTGTGACTCCCATCATAAAGGCCCACCGGGAGAAGGATGGAAGTGGGGTGGCTGCAGTGAAGATGCTGAATTTGGGGTTTTGGTATCTCGAGAGTTTGCAGACGCTCGTGAGAACCGGCCAGATGCTCGGAGTGCCATGAACAGGCACAACAATGAGGCAGGACGAATGACCATATTGGAGAACATGCACCTGCGCTGTAAATGCCATGGGCTGTCAGGCAGCTGTGAAGTGAAGACGTGCTGGTGGGCGCAGCCTGACTTCAGACTGTTGGGGGACTACCTGAAAGACAAGTACGACAGCGCCTCTGAGATGGTGGTGGAGAAACACCGGGAGTCCAGAGGCTGGGTGGAAACACTACGAGCCAAATACGCCTTCTTCAAGCATCCCACTGAGCGAGACCTGGTATACTATGAGGGATCACCCAACTTCTGCGAGCCAAACCCAGAGACGGGCTCATTCGGCACCCGTGACCGTGCCTGCAACGTGTCGTCGCACGGCATCGAAGGCTGTGACCTGCTGTGCTGTGGCCGTGGCCATAACACACGGACAGAAAAGCGCAAAGAGAAATGCCACTGCATCTTCCACTGGTGCTGTTACGTTAGCTGCCAGGAATGTGTGAGGGTCTACGACGTACATACATGTAAATAAGCACAGCGGGTCCAGAAAGAAAGGGACTAGTGGACATTAAGCAAGAGAATGAGagactgaggaaaaaaaaaca
>TCONS_00010927
GTCCCTGGCCCTTGGGCAGCAGTACTCATCCATTGGATCCCAACCCATCCTGTGTGGCTCCATACCTGGCCTGGTGCCAAAACAGCTGCGCTTCTGCCGCAATTACATAGAGATCATGCCCAGTGTAGCGGAAGGAGTCAAACTGGGTATCCAGGAGTGTCAGCACCAGTTCCGTGGTCGCAGGTGGAACTGCACCACTATCAAGGACAGTCTAGCAATATTTGGACCAGTGCTTGATAAAGCTACAAGGGAATCTGCATTTGTTCATGCGATTGCCTCAGCTGGAGTAGCATTTGCAGTAACCCGTTCATGTGCAGAGGGGACCTCCACTATGTGTGGCTGTGACTCCCATCATAAAGGCCCACCGGGAGAAGGATGGAAGTGGGGTGGCTGCAGTGAAGATGCTGAATTTGGGGTTTTGGTATCTCGAGAGTTTGCAGACGCTCGTGAGAACCGGCCAGATGCTCGGAGTGCCATGAACAGGCACAACAATGAGGCAGGACGAATGACCATATTGGAGAACATGCACCTGCGCTGTAAATGCCATGGGCTGTCAGGCAGCTGTGAAGTGAAGACGTGCTGGTGGGCGCAGCCTGACTTCAGACTGTTGGGGGACTACCTGAAAGACAAGTACGACAGCGCCTCTGAGATGGTGGTGGAGAAACACCGGGAGTCCAGAGGCTGGGTGGAAACACTACGAGCCAAATACGCCTTCTTCAAGCATCCCACTGAGCGAGACCTGGTATACTATGAGGGATCACCCAACTTCTGCGAGCCAAACCCAGAGACGGGCTCATTCGGCACCCGTGACCGTGCCTGCAACGTGTCGTCGCACGGCATCGAAGGCTGTGACCTGCTGTGCTGTGGCCGTGGCCATAACACACGGACAGAAAAGCGCAAAGAGAAATGCCACTGCATCTTCCACTGGTGCTGTTACGTTAGCTGCCAGGAATGTGTGAGGGTCTACGACGTACATACATGTAAATAAGCACAGCGGGTCCAGAAAGAAAGGGACTAGTGGACATTAAGCAAGAGAATGAGagactgaggaaaaaaaaaca

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0043010 camera-type eye development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0120036 plasma membrane bounded cell projection organization biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0035904 aorta development biological_process
GO:0048880 sensory system development biological_process
GO:0040011 locomotion biological_process
GO:0061564 axon development biological_process
GO:0007389 pattern specification process biological_process
GO:0048666 neuron development biological_process
GO:0050793 regulation of developmental process biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0060284 regulation of cell development biological_process
GO:0001654 eye development biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0022008 neurogenesis biological_process
GO:0030902 hindbrain development biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0150063 visual system development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0017134 fibroblast growth factor binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0005007 fibroblast growth factor-activated receptor activity molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function
GO:0019199 transmembrane receptor protein kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-081003-1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within cloaca development and thalamus development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including basal plate midbrain region; brain; midbrain hindbrain boundary neural tube; posterior neural tube; and presumptive diencephalon. Human ortholog(s) of this gene implicated in tetraamelia syndrome 1. Orthologous to human WNT3 (Wnt family member 3).

Ensembl:

ensembl_id ENSDARG00000038990

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010734 False 437 lncRNA 0.45 1 22258962 22259398
TCONS_00009300 False 1498 mRNA 0.51 4 22258962 22304841
TCONS_00010927 True 1061 lncRNA 0.53 3 22289980 22304841

Neighbor

gene id symbol gene type direction distance location
XLOC_004695 NA coding upstream 239192 22017946 ~ 22019770 (+)
XLOC_004694 NA coding upstream 459566 21757817 ~ 21799396 (+)
XLOC_004693 pkd1b coding upstream 510954 21697540 ~ 21748008 (+)
XLOC_004692 mrpl27 coding upstream 570875 21684239 ~ 21688087 (+)
XLOC_004690 ca10a coding upstream 705325 21298317 ~ 21553637 (+)
XLOC_004697 hdlbpb coding downstream 99267 22404108 ~ 22445061 (+)
XLOC_004698 polr2a coding downstream 255226 22560067 ~ 22573297 (+)
XLOC_004699 capgb coding downstream 271563 22576404 ~ 22618080 (+)
XLOC_004700 CR925753.1 coding downstream 273563 22578404 ~ 22578530 (+)
XLOC_004701 NA coding downstream 313547 22618388 ~ 22619122 (+)
XLOC_004691 FO704814.1 non-coding upstream 821504 21437346 ~ 21437458 (+)
XLOC_004689 NA non-coding upstream 1151975 20806897 ~ 21106987 (+)
XLOC_004679 NA non-coding upstream 1754161 20491619 ~ 20504801 (+)
XLOC_004707 NA non-coding downstream 732606 23037447 ~ 23040091 (+)
XLOC_004708 BX927205.1 non-coding downstream 805322 23110163 ~ 23110277 (+)
XLOC_004711 NA non-coding downstream 1149588 23454429 ~ 23605722 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_03649864_03661903 WNT3 coding CI01000063 null 3649864 ~ 3661939 (+)