XLOC_004697 (hdlbpb)


Basic Information

Item Value
gene id XLOC_004697
gene name hdlbpb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22404108 ~ 22445061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009301
TTCGACTCCCAGCAGCAGTGTTTACTATCAGCAGACAAGCGGCAAGGCTTTTCCTTCTGATAAGGGCTGAACAAACAGACTTGACACTGAAGAGCTCTCGGTAGCAGCCACCTGGACGGACTTTCTGGTTTTTGACCCTTTGCAGGATAGCGGATCCGGTCTTGAAACATGAGCTCTGTGGCAGTGTTGACTCAGGAGAGTTTTGCCGAGCACCGCAGTGGCTTGAAGGACGTTCAGATCATGGGTAGTGCACCAGAGGATGAGGCCTATATACCCACCTATCTGGAGGCCTTTCCTCCTTTACCGGAAAAGGGCTCTCCAGGTGAGAAGTCGGGTGAACCAGCAGGTGCCTGGAGCAAAATCAGACCCATCAAAGCCTCTGTCATCACTCAGGTGTTTCATGTCCCTCTGGAGGAGCGGCGGTATAAAGACAACAGTCAGTTCGGTGAGGGTGAAGAGGCGAAAGTGTGCCTGGACATCATGCAGAAAACCGGAGCGCACATCGAACTGTCTCTTGCCAAGGACCAAGGCCTCTCCATCATGGTGACCGGAAAACTGGACTCGGTCATGAAAGCAAGGAAGGAGATTGTGGCTCGACTGCAGACTCAGGCCTCTGCAACTGTGCTTATCCCAAAAGAACATCATCGATTTGTGATCGGAAAGAATGGGGAAAAGTTGCAGGAACTGGAGTTAAAAACAGCGACCAAGATCGCCATTCCTCGCTCTGACGATCCCAACGCCAACATCCGCATCACTGGCACCAAGGAAGGCATTGAGAAAGCTCGCCATGAAATTCAACTAATCTCCGCAGAGCAGGACAAGCGTGCTGTGGAACGTTTGTGTTTTGAGAAAGCTTTTCATCCATTCATCGCCGGTGCTTATAATCGACTCGTTCAAGAGCTGAGTCAGGAGACCGGAGCTCGTATTAGCATCCCACCACCCAGCATTCCCAAAGATGAGATCGTCATTACTGGAGAGAAAGAGGCGGTGGCGATGGCCATCGCACGCATCCGGGCCACCTATGAAGAGAAGAAACGAAAAACTACCACAATCTCGGTGGAGGTGAAAAAGTCCCAACACAAGTACATTGTTGGCCCAAAAGGAAACACCCTGCAGGAGATCTTGGAGAACACAGGGGTGTCTGTGGAAATGCCTCCTTTGGACTCCGCATCCGAGACCATCATCCTCCGAGGAGAGCCAGATAAACTAGGTCCTGCTCTTACACAGGTCTACGCCAAGGCTAAAAGTGTTATAGTGGCAGAAGTGATTGCTCCGGCTTGGCTTCATCGATTCATCATTGGCAAGAAAGGACAAAACATCAGTCGCATTACACAGCAGCTGCCTAAGGTTCATATAGAGTTCACTGATGGAGAGGAGCGCATTTGTCTAGAGGGACCGACAGAGGAGGTGGAACAAGCCCAGATTCAGATACAGGAGATCATCAAAGACCTGATGGTGAGAATGGACTATACAGAGATTAACATTGATCAGCGTTTCCACAGACACCTCATAGGCAAAAACGGAGCCAACATAAACCGGATAAAGGAGCAGTACAAGGTATCGGTGAGGATTCCTCAGGACTCGGAGCGCTGTGGTTTGGTTCGCATTGAAGGTGATCCTCAGGGAGTGCAGCTTGCTCGCAAAGAACTGATGGACATGGCCCAGCGGATGGAAAATGAACGCACAAAGGACCTGATCATAGAGCAGAAGTTTCACCGCACCATCATTGGGCAGAAAGGAGAGAAGATCAAAGAAGTGCGCGACAAGTTTCCTGAGGTTATCATCATTTTTCCAGACCAGCAACAGAAAAGTGACATAGTGCAGCTGCGGGGCCCCAAAAATGAGGTGGAGAAATGTGCAAAGTTTCTGCAGAAACTCATCGCTGAGCTGGTTGAGAGCAGCTTCTCAATTTCTGTACCCATTCATAAGCAGTTCCACAAAAACATTATTGGCAAAGGAGGTGCCAACATTAAGAAGATACGAGAGGAAACCAACACCAAGATTGATCTCCCAACGGAAAACAGCAACTCTGAAGTGATTGTAATAACAGGCAAAAAGAGCAACTGTGAAGCTGCACGAGAACGAATCCTCGCCATTGAAAAAGAGCTGGCCAGCATGAAAGAGGTGGAGGTTTCCATCCCAGCCAAGCTGCATAACTCTCTGATTGGATCCAAAGGCAGCCTGGTGCGCTCCATAATGGAGGATTGTGGAGGTGTTCACATCCACTTCCCTGCGGAGGGATCAGGGCTGGACAGGGTCACCATCAGAGGTCCTGCAGAGGAAGTGGAGAGAGCCAGAAAACAACTGCTGCAGCTGGCGGAGGAGAAGCAAGTCAACAACTTCTCAGTTGAGCTTCAAGCCAAGCCGGAGTACCACAAGTACCTGATTGGCCGAGGAGGAGCTAATATCCGTCGTGTCAGAGATCGAACTGGAGCACGGATCATCTTCCCATCGGCAGACGATCAGGAACAGGAGCACATTACCATCATGGGTAAAGAAGAAGCGGTGATACTCGCCCAGAGAGAGCTGGAAACACTCATCAAAAATCTGGATGATGTGATAGAGGACAGTATGATAGTGGAGCCGCGGCACCATCGTCATTTCGTCTGTCGGAGAGGGCAGGTTTTGAGGGAACTGGCGGAAGAATACGGTGGAGTTGCTGTGAGCTTTCCTCGCACAGGCACACACAGCGACAGCATCACCCTCAAAGGACCCAGAGAGTGTGTGGACGCTGCCAAGAAACGCATTCAGGAGATTGTTTGCGATCTGGAGTCGCAGGTGAGCATGGAGGTGTTGATTCCTCAGCGGTACCACAGAGCCATCATGGGCCCCAAAGGCTGCCGAATACAACAGATCACACGTGAACATGAAGTCCAGATCAAGTTTCCAGACAGAGACGAGTCTGCAGCTCAGGAGCCTACATCTCAAGAGAATGGGGACACCGATCTCACCCCTCGAAAATGCGATATCATCACTGTGACGGGACGAGCTGAAAAGTGTGAATTGGCACGGGCTGCTTTACTTGCTTTAGTTCCTGTGACCATCGATGTTGAGGTTTCCTACGACCTTCATCGTTATATCATAGGACAAAAAGGAAGTGGAATAAGGAAGATGATGGAGGATTATGAGGTGAACATTTGGGTTCCTCAACCTGAGCAGCAGTCAGACATCATAAAGATCACAGGACAGGTGGCCAGTGTGGAGCGAGCCAAACACGGGCTGCTGGACAGAGTCAAAGAGCTGCAGGCCGAGCAGGAAGATCGGGCCTTGCGGAGCTATAAAGTAACGCTCTCGGTGGACCCCAAATATCACCCCAAAATCATCGGTCGCAAAGGAGCCGTCATCTCCCAAATCCGCAAAGAGTACGATGTAAACGTTCAGTTCCCGGACAAGGGTGATGAGCAGCAGGATGTGATCGTGATCTCGGGGTATGAGAGGAATGCTAACGATGCTAAGTCGGCCATCGAGCAGCTGGTGGCCGCGCTGCAGGAGATGGTGAGCGAGGACGTCCGGCTGGACCGGCGGGTTCACGCACGCATCATCGGGGCACGTGGAAAAGCCATCCGCAAAATCATGGAGGAGTTCAAAGTTGATATACGGTTTCCTCAGCCGGGTTCTGAGGACCCAAACAAGGTGACTGTCACAGGACTGCCGGAGAATGTTGACAACACCATTGACCATCTGCTCAACCTGGAAGAAGAATACATGCTGAGCGTCACAGAAACAGAGACTATGGCAGCTTATATGAAGCCTCCTTCAAAGACGATGGGGACTGGAGGAAATGACGAGGACAACAGAGCCCTGGCTAAAGGCTTCGTCGTACGGGACGCCCCCTGGAACGCACAAGGCAACAAGGCACCAGACGTGAGCAGTGCTGAAGAGTTCCCAACGTTTGGATCTGGAATAACACCGAAACAAACGTCAGCGTGGGGACCCAAGAAGTGCTAAACAGATGGATTTGTTCAGATCTCACATCTGTTGACTCTCAAGAACAAGAACATTCCCTATAATTTGCTCTCGTCTTTTTCTCCGTGCGTCTAGTTTTCTGAAGGAGCCACTTCTGTCCTCTCCTCTCTTTGCCTAAATCGCTCCTTTACATCGGTGGATTGATgttcttcaacacatttcgacTGTCCACAGGCAGACAATGTCACTTCCTGTTGTGTCTAATGTAAAGGACATCACAGAAATGAAACCTCAAGTAGCAGTTAGCATCATTATCCGCCTGTTTTGGCAAACGGCTAGGCATTGGAGAACaaggcatatgtttttttttttttttggtttggacTATTTATTGCAAGAGAATCCCTAGTTCACTGTGTATGAGTTCTTTTTTAAGTCTTAAATGGTTTTTACtggtttttatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagatccaTTTGAATGCACTTGGTCTGTTTTCACTGTATAATGTAGGAGAGATGAAGACTCCACAATTATGATCTctcttttatattttgttcctcTATTTATTAGCGTATTTATATGTCCGTTATTTATCAATTTTGTTCAAACTCTGATGGGTGTGGATGGTTTTGAAGCATAAACAAGTTTTAGATAATA
>TCONS_00009302
ATGAGCTCTGTGGCAGTGTTGACTCAGGAGAGTTTTGCCGAGCACCGCAGTGGCTTGAAGGACGTTCAGATCATGGGTAGTGCACCAGAGGATGAGGCCTATATACCCACCTATCTGGAGGCCTTTCCTCCTTTACCGGAAAAGGGCTCTCCAGGTGAGAAGTCGGGTGAACCAGCAGGTGCCTGGAGCAAAATCAGACCCATCAAAGCCTCTGTCATCACTCAGGTGTTTCATGTCCCTCTGGAGGAGCGGCGGTATAAAGACAACAGTCAGTTCGGTGAGGGTGAAGAGGCGAAAGTGTGCCTGGACATCATGCAGAAAACCGGAGCGCACATCGAACTGTCTCTTGCCAAGGACCAAGGCCTCTCCATCATGGTGACCGGAAAACTGGACTCGGTCATGAAAGCAAGGAAGGAGATTGTGGCTCGACTGCAGACTCAGGCCTCTGCAACTGTGCTTATCCCAAAAGAACATCATCGATTTGTGATCGGAAAGAATGGGGAAAAGTTGCAGGAACTGGAGTTAAAAACAGCGACCAAGATCGCCATTCCTCGCTCTGACGATCCCAACGCCAACATCCGCATCACTGGCACCAAGGAAGGCATTGAGAAAGCTCGCCATGAAATTCAACTAATCTCCGCAGAGCAGGACAAGCGTGCTGTGGAACGTTTGTGTTTTGAGAAAGCTTTTCATCCATTCATCGCCGGTGCTTATAATCGACTCGTTCAAGAGCTGAGTCAGGAGACCGGAGCTCGTATTAGCATCCCACCACCCAGCATTCCCAAAGATGAGATCGTCATTACTGGAGAGAAAGAGGCGGTGGCGATGGCCATCGCACGCATCCGGGCCACCTATGAAGAGAAGAAACGAAAAACTACCACAATCTCGGTGGAGGTGAAAAAGTCCCAACACAAGTACATTGTTGGCCCAAAAGGAAACACCCTGCAGGAGATCTTGGAGAACACAGGGGTGTCTGTGGAAATGCCTCCTTTGGACTCCGCATCCGAGACCATCATCCTCCGAGGAGAGCCAGATAAACTAGGTCCTGCTCTTACACAGGTCTACGCCAAGGCTAAAAGTGTTATAGTGGCAGAAGTGATTGCTCCGGCTTGGCTTCATCGATTCATCATTGGCAAGAAAGGACAAAACATCAGTCGCATTACACAGCAGCTGCCTAAGGTTCATATAGAGTTCACTGATGGAGAGGAGCGCATTTGTCTAGAGGGACCGACAGAGGAGGTGGAACAAGCCCAGATTCAGATACAGGAGATCATCAAAGACCTGATGGTGAGAATGGACTATACAGAGATTAACATTGATCAGCGTTTCCACAGACACCTCATAGGCAAAAACGGAGCCAACATAAACCGGATAAAGGAGCAGTACAAGGTATCGGTGAGGATTCCTCAGGACTCGGAGCGCTGTGGTTTGGTTCGCATTGAAGGTGATCCTCAGGGAGTGCAGCTTGCTCGCAAAGAACTGATGGACATGGCCCAGCGGATGGAAAATGAACGCACAAAGGACCTGATCATAGAGCAGAAGTTTCACCGCACCATCATTGGGCAGAAAGGAGAGAAGATCAAAGAAGTGCGCGACAAGTTTCCTGAGGTTATCATCATTTTTCCAGACCAGCAACAGAAAAGTGACATAGTGCAGCTGCGGGGCCCCAAAAATGAGGTGGAGAAATGTGCAAAGTTTCTGCAGAAACTCATCGCTGAGCTGGTTGAGAGCAGCTTCTCAATTTCTGTACCCATTCATAAGCAGTTCCACAAAAACATTATTGGCAAAGGAGGTGCCAACATTAAGAAGATACGAGAGGAAACCAACACCAAGATTGATCTCCCAACGGAAAACAGCAACTCTGAAGTGATTGTAATAACAGGCAAAAAGAGCAACTGTGAAGCTGCACGAGAACGAATCCTCGCCATTGAAAAAGAGCTGGCCAGCATGAAAGAGGTGGAGGTTTCCATCCCAGCCAAGCTGCATAACTCTCTGATTGGATCCAAAGGCAGCCTGGTGCGCTCCATAATGGAGGATTGTGGAGGTGTTCACATCCACTTCCCTGCGGAGGGATCAGGGCTGGACAGGGTCACCATCAGAGGTCCTGCAGAGGAAGTGGAGAGAGCCAGAAAACAACTGCTGCAGCTGGCGGAGGAGAAGCAAGTCAACAACTTCTCAGTTGAGCTTCAAGCCAAGCCGGAGTACCACAAGTACCTGATTGGCCGAGGAGGAGCTAATATCCGTCGTGTCAGAGATCGAACTGGAGCACGGATCATCTTCCCATCGGCAGACGATCAGGAACAGGAGCACATTACCATCATGGGTAAAGAAGAAGCGGTGATACTCGCCCAGAGAGAGCTGGAAACACTCATCAAAAATCTGGATGATGTGATAGAGGACAGTATGATAGTGGAGCCGCGGCACCATCGTCATTTCGTCTGTCGGAGAGGGCAGGTTTTGAGGGAACTGGCGGAAGAATACGGTGGAGTTGCTGTGAGCTTTCCTCGCACAGGCACACACAGCGACAGCATCACCCTCAAAGGACCCAGAGAGTGTGTGGACGCTGCCAAGAAACGCATTCAGGAGATTGTTTGCGATCTGGAGTCGCAGGTGAGCATGGAGGTGTTGATTCCTCAGCGGTACCACAGAGCCATCATGGGCCCCAAAGGCTGCCGAATACAACAGATCACACGTGAACATGAAGTCCAGATCAAGTTTCCAGACAGAGACGAGTCTGCAGCTCAGGAGCCTACATCTCAAGAGAATGGGGACACCGATCTCACCCCTCGAAAATGCGATATCATCACTGTGACGGGACGAGCTGAAAAGTGTGAATTGGCACGGGCTGCTTTACTTGCTTTAGTTCCTGTGACCATCGATGTTGAGGTTTCCTACGACCTTCATCGTTATATCATAGGACAAAAAGGAAGTGGAATAAGGAAGATGATGGAGGATTATGAGGTGAACATTTGGGTTCCTCAACCTGAGCAGCAGTCAGACATCATAAAGATCACAGGACAGGTGGCCAGTGTGGAGCGAGCCAAACACGGGCTGCTGGACAGAGTCAAAGAGCTGCAGGCCGAGCAGGAAGATCGGGCCTTGCGGAGCTATAAAGTAACGCTCTCGGTGGACCCCAAATATCACCCCAAAATCATCGGTCGCAAAGGAGCCGTCATCTCCCAAATCCGCAAAGAGTACGATGTAAACGTTCAGTTCCCGGACAAGGGTGATGAGCAGCAGGATGTGATCGTGATCTCGGGGTATGAGAGGAATGCTAACGATGCTAAGTCGGCCATCGAGCAGCTGGTGGCCGCGCTGCAGGAGATGGTGAGCGAGGACGTCCGGCTGGACCGGCGGGTTCACGCACGCATCATCGGGGCACGTGGAAAAGCCATCCGCAAAATCATGGAGGAGTTCAAAGTTGATATACGGTTTCCTCAGCCGGGTTCTGAGGACCCAAACAAGGTGACTGTCACAGGACTGCCGGAGAATGTTGACAACACCATTGACCATCTGCTCAACCTGGAAGAAGAATACATGCTGAGCGTCACAGAAACAGAGACTATGGCAGCTTATATGAAGCCTCCTTCAAAGACGATGGGGACTGGAGGAAATGACGAGGACAACAGAGCCCTGGCTAAAGGCTTCGTCGTACGGGACGCCCCCTGGAACGCACAAGGCAACAAGGCACCAGACGTGAGCAGTGCTGAAGAGTTCCCAACGTTTGGATCTGGAATAACACCGAAACAAACGTCAGCGTGGGGACCCAAGAAGTGCTAA
>TCONS_00009303
CGCACAAAGGACCTGATCATAGAGCAGAAGTTTCACCGCACCATCATTGGGCAGAAAGGAGAGAAGATCAAAGAAGTGCGCGACAAGTTTCCTGAGGTTATCATCATTTTTCCAGACCAGCAACAGAAAAGTGACATAGTGCAGCTGCGGGGCCCCAAAAATGAGGTGGAGAAATGTGCAAAGTTTCTGCAGAAACTCATCGCTGAGCTGGTACTAGAGTAATTTCCTCTTGCTTCCTTCCTCCTCTCAAATAACGTTCGCTCACTTACTAATGCTAGTTCGAAGATTCACAGAGCAGCTATTAAGAGTTTGTGTTCAGGCAGCTGTGAAATGATCAGATGACACATTCGTTTTTTCTTCTATTTCCTGTTTTGAAGGAAAATCTGTGGTTGTTTACAGTTGAGATATTGTGTTCTCTATGAATGGCATTGAGGTTTAGTGTCTAATTATGTGCTTTTCATGTTATCAGGTTGAGAGCAGCTTCTCAATTTCTGTACCCATTC
>TCONS_00009304
aaaaacagggggggctaataattctgacttcaactgtatacatagaGTATTTGCTTTAGAGGCGCCTTttgagttattttctttattccaGGTTGATATACGGTTTCCTCAGCCGGGTTCTGAGGACCCAAACAAGGTGACTGTCACAGGACTGCCGGAGAATGTTGACAACACCATTGACCATCTGCTCAACCTGGAAGAAGAATACATGCTGAGCGTCACAGAAACAGAGACTATGGCAGCTTATATGAAGCCTCCTTCAAAGACGATGGGGACTGGAGGAAATGACGAGGACAACAGAGCCCTGGCTAAAGGCTTCGTCGTACGGGACGCCCCCTGGAACGCACAAGGCAACAAGGCACCAGACGTGAGCAGTGCTGAAGAGTTCCCAACGTTTGGATCTGGAATAACACCGAAACAAACGTCAGCGTGGGGACCCAAGAAGTGCTAAACAGATGGATTTGTTCAGATCTCACATCTGTTGACTCTCAAGAACAAGAACATTCCCTATAATTTGCTCTCGTCTTTTTCTCCGTGCGTCTAGTTTTCTGAAGGAGCCACTTCTGTCCTCTCCTCTCTTTGCCTAAATCGCTCCTTTACATCGGTGGATTGATgttcttcaacacatttcgacTGTCCACAGGCAGACAATGTCACTTCCTGTTGTGTCTAATGTAAAGGACATCACAGAAATGAAACCTCAAGTAGCAGTTAGCATCATTATCCGCCTGTTTTGGCAAACGGCTAGGCATTGGAGAACaaggcatatgtttttttttttttttggtttggacTATTTATTGCAAGAGAATCCCTAGTTCACTGTGTATGAGTTC

Function

symbol description
hdlbpb Predicted to enable mRNA binding activity. Predicted to be part of polysome. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; mesoderm; pectoral fin; and somite. Orthologous to human HDLBP (high density lipoprotein binding protein).

GO:

id name namespace
GO:0005844 polysome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6822 Predicted to enable mRNA binding activity. Predicted to be part of polysome. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; mesoderm; pectoral fin; and somite. Orthologous to human HDLBP (high density lipoprotein binding protein).

Ensembl:

ensembl_id ENSDARG00000061864

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009301 False 4622 mRNA 0.49 28 22404108 22445061
TCONS_00009302 False 3780 mRNA 0.51 26 22407852 22444387
TCONS_00009303 False 503 lncRNA 0.42 2 22423953 22427055
TCONS_00009304 True 836 processed_transcript 0.45 3 22443629 22444772

Neighbor

gene id symbol gene type direction distance location
XLOC_004696 NA coding upstream 99267 22258962 ~ 22304841 (+)
XLOC_004695 NA coding upstream 384338 22017946 ~ 22019770 (+)
XLOC_004694 NA coding upstream 604712 21757817 ~ 21799396 (+)
XLOC_004693 pkd1b coding upstream 656100 21697540 ~ 21748008 (+)
XLOC_004692 mrpl27 coding upstream 716021 21684239 ~ 21688087 (+)
XLOC_004698 polr2a coding downstream 115006 22560067 ~ 22573297 (+)
XLOC_004699 capgb coding downstream 131343 22576404 ~ 22618080 (+)
XLOC_004700 CR925753.1 coding downstream 133343 22578404 ~ 22578530 (+)
XLOC_004701 NA coding downstream 173327 22618388 ~ 22619122 (+)
XLOC_004702 mfsd8 coding downstream 183643 22628704 ~ 22645215 (+)
XLOC_004691 FO704814.1 non-coding upstream 966650 21437346 ~ 21437458 (+)
XLOC_004689 NA non-coding upstream 1297121 20806897 ~ 21106987 (+)
XLOC_004707 NA non-coding downstream 592386 23037447 ~ 23040091 (+)
XLOC_004708 BX927205.1 non-coding downstream 665102 23110163 ~ 23110277 (+)
XLOC_004711 NA non-coding downstream 1009368 23454429 ~ 23605722 (+)

Expression


Co-expression Network