XLOC_004698 (polr2a)


Basic Information

Item Value
gene id XLOC_004698
gene name polr2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 22560067 ~ 22573297 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009305
GGCTGTGTAAACCTGTAGCAAAGCGGGCAGTCTATATAAAGACGTGTGAGAGCGCTTTGCTCTCAGATGCGCTTAGAGCGCACTGGAGTGTAGATCGGGGAAAGGGAAGGGGAGTGTCGGAAGCGACAATAGCTAGtatataaacacaattttaaaaagcacgtTGAATACCAAGCCACGGTAGGCACTGGGAAACCGCCATCGGACAGGTTCCGGTCACCATTGGGTGCCAGGAGAGTCTTGGTGGCGTTTCAGACTGGTGTTCCTTCTTACAAAGCGGCGTGCCGGGGGAGGACGCGTCTCTTTGAATAGACAGGATGCACGGACCGCCTTCCAGCGACAGCGCATGCCCATTGCGCCTCATCAAGAGAGTGCAATTCGGCGTCCTCAGCCCAGATGAACTTAAACGGATGTCCGTTACCGAAGGGGGCATCAAGTACCCTGAGACCACAGAAGGAGGACGCCCTAAACTGGGGGGACTCATGGACCCCCGGCAAGGGGTTATTGAAAGATCAGGCAGATGCCAGACATGTGCAGGTAACATGACTGAGTGCCCTGGTCATTTTGGCCACATTGAGCTGGCCAAGCCGGTCTTTCATGTTGGCTTCATCACAAAGATCATGAAGGTCCTCCGCTGTGTGTGTTTCTTCTGTTCAAAGCTGCTTGTGGATGCGAACAATCCAAAAATCAAAGACATCCTGACAAAGTCTAAGGGGCAGCCTCGCAAGCGTCTGACCCACGTCTATGACCTCTGTAAAGGCAAAAACATTTGCGAGGGTGGAGAGGAGATGGACAACAAGTTTGGAGTTGAGCAGCCCGAGTCAGAGGACATCACCAAAGAGAAGGGTCATGGAGGCTGTGGCAGGTACCAACCACGCATCCGTCGCTCTGGCCTGGAGTTGTATGCTGAATGGAAGCATGTGAATGAAGACTCTCAGGAGAAAAAGATTCTCCTCAGCCCTGAACGTGTGCATGAGATCTTTAAGCGCATTGCAGATGAAGAGGACATAATCCTGGGCATGGACCCCAAATACGCCCGTCCCGAGTGGATGATTGTCACAGTGTTGCCTGTTCCCCCTCTAGCTGTCAGACCGGCTGTGGTCATGCAGGGCTCTGCTAGGAACCAGGATGATTTAACACACAAGTTGGCTGACATTGTCAAGATCAATAACCAGCTGAAGCGAAATGAGCAGAGTGGAGCAGCAGCTCATGTTATAGCAGAGGATGTCAAGCTGCTTCAGTTTCACGTGGCCACCATGGTGGACAATGAACTGCCAGGTCTACCTAGGgCAATGCAAAAGTCTGGTCGGCCACTGAAGTCCATCAAGCAAAGGCTAAAGGGTAAAGAAGGACGTGTCAGAGGTAATTTGATGGGGAAGCGTGTGGACTTCTCTGCCCGAACTGTCATCACGCCTGATCCTAACCTGCAGATTGACCAGGTGGGAGTACCCCGTTCTATTGCAGCAAACATGACCTTTCCTGAGATCGTCACACCCTTTAACATTGACAGACTTCAAGAGCTTGTGAGGAGAGGTAACAGTCAGTACCCTGGAGCCAAATATATTATCCGAGACAACGGGGACAGAATTGACCTCCGATTCCACCCTAAACCAAGTGACCTTCATCTTCAGATAGGATACAAAGTTGAGAGGCACATGTGTGATGGGGACatcattgtgttcaacagacagcCTACGCTCCACAAAATGTCTATGATGGGCCATAGAGTTCGAATCTTGCCTTGGTCAACATTTCGACTCAACCTCAGTGTGACGACCCCATACAATGCTGACTTTGACGGCGATGAAATGAACCTGCACTTGCCACAGTCTCTGGAGACCCGTGCTGAGATCCAGGAGCTGGCCATGGTGCCTCGTATGATTGTCACACCACAGTCCAACAGACCTGTCATGGGTATTGTGCAGGACACACTGACAGCTGTGCGCAAGTTCACCAAGAGAGATGTCTTCTTAGAGAGGGGTGAGGTGATGAATCTCCTCATGTTTCTCTCTACATGGGATGGCAAAGTGCCCCAACCAGCCATCTTGAAGCCTCGTCCCCTCTGGACCGGCAAACAGATCTTTAGCTTGATTATCCCTGGCCACATCAATGCCATCCGCACACACAGCACTCATCCTGATGAAGAGGACAGTGGCCCTTACAAGAACATCTCCCCTGGAGACACAAAGGTAATTGTGGAGAACGGTGAGCTGATCATGGGGATCCTGTGTAAGAAATCGTTGGGAACCTCAGCTGGATCACTTGTCCATATCTCATACCTTGAGATGGGCCATGACATCACAAGACTCTTCTATTCCAACATCCAGACTGTGGTTAACAACTGGCTCCTCATTGAAGGTCACTCTATTGGTATTGGAGACTCCATTGCTGATAAGGCGACATATCAGGACATTCAGAACACTATCAAGAAAGCCAAACAGGATGTGATAGAGGTCATTGAAAAAGCCCACAACAATGAGCTGGAGCCTACTCCAGGTAACACTTTGAGACAGACCTTTGAGAACCAGGTTAATCGCATTCTAAATGATGCTCGAGACAAAACTGGATCCTCTGCCCAGAAGTCCCTGTCAGAGTACAACAATTTCAAATCCATGGTGGTGGCTGGTTCAAAAGGGTCCAAAATTAACATTTCTCAGGTTATTGCTGTGGTGGGTCAGCAGAACGTTGAGGGTAAGCGAATTCCCTTTGGTTTCAAACATCGCACACTCCCTCACTTCATCAAAGACGACTACGGTCCTGAGAGTAGAGGCTTTGTGGAGAACTCTTATCTGGCCGGTCTCACACCAACTGAGTTTTTCTTTCACGCCATGGGAGGCAGAGAAGGTCTGATTGATACAGCTGTCAAAACTGCTGAGACAGGTTATATTCAGCGTCGTCTAATCAAGTCTATGGAGTCTGTAATGGTGAAGTACGATGCAACAGTCAGAAACTCCATTAACCAGGTTGTCCAGCTGAGGTATGGAGAGGATGGGCTTGCAGGAGAGGCTGTGGAGTTTCAAAATATGGCCACTCTTAAGCCATCGCACAAAGCCTTTGAAAAGAAGTTCAAGTTTGACTACGCCAATGAACGAGCTCTCCGCCGCACTCTTCAGGAAGATGTGGTGAAAGATGTGATGACCAATGCTCATGTCCAGAGTTCTCTAGAGAGAGAGTTTGAGAAGATGAGGGAAGACCGAGAGATCTTGAGGGCCATTTTCCCCACAGGAGACAGCAAGGTGGTCCTACCGTGCAATCTGGCCAGAATGATCTGGAATGCTCAGAAGATTTTCCGCATTAACCCTCGGGCACCAACTGATCTCAACCCAGCACGGGTTGTGGACGGAGTTAAGGAGTTGAGTAAGAAGCTGGTGATTGTAAATGGCGATGACCAGTTAAGCAGGCAAGCCCAGGAGAACGCCACTCTGCTTTTCAACATCCATCTGCGATCAACCCTCTGTTCCAAACGAATGACTGAGGAGTTCCGTCTTAGCACTGAGGCCTTTGATTGGCTGCTGGGAGAGATTGAGACCAAATTTAACCAATCCATTGCTCACCCAGGTGAGATGGTAGGTGCTCTGGCTGCCCAGTCCCTGGGAGAGCCTGCTACTCAGATGACCCTGAACACATTCCACTACGCCGGTGTGTCCGCCAAAAACGTCACTCTCGGTGTGCCTCGTCTCAAAGAGCTTATCAACATCTCCAAGCGACCCAAGACCCCCTCCCTGACTGTCTTTCTACTGGGCCAAGCAGCCCGTGATGCAGAGAGGGCCAAAGATATCCTGTGTCGGTTGGAGCACACAACCCTGCGCAAGGTCACTGCCAACACAGCCATTTATTATGACCCCAACCCTCAGAACACTGTGGTGACTGAGGATCAAGAGTGGGTTAACGTCTACTATGAGATGCCTGACTTCGATGTGACCCGAATTTCACCCTGGCTGTTGCGTATTGAACTTGACCGCAAACACATGACTGACCGTAAGCTGACTATGGAGCAAATTGCAGAAAAGATCAATGCAGGATTTGGTGACGACTTAAACTGCATCTTCAATGATGACAATGCTGAGAAACTGGTACTGCGAATCCGCATCATGAACAGCGACGAGAACAAGTTCCAAGAGGATGAGGAGGTTGTAGATAAGATGGACGATGATGTCTTCCTTCGATGCATTGAATCCAACATGCTGACAGACATGACCCTGCAAGGCATTGAGCAGATCAGCAAGGTGTACATGCATCTTCCCCAGACGgacaacaaaaagaaaatcatCATCACAGAAGATGGAGAGTTTAAAGCCCTGCAGGAGTGGATCCTGGAAACAGATGGAGTCAGTCTCATGAGGGTCCTTAGTGAAAAGGATGTGGACCCTGTTCGGACCACCTCCAACGACATTGTGGAGATTTTCACTGTTCTTGGTATTGAGGCAGTGCGTAAGGCTCTGGAAAGAGAGTTGTACCATGTCATCTCTTTTGATGGTTCTTACGTTAACTACCGCCATCTTGCCTTGCTGTGTGACACAATGACCTGCAGGGGTCACTTGATGGCTATCACTCGTCATGGTATCAATAGGCAGGACACTGGACCACTAATGAAGTGCTCTTTTGAGGAGACGgtGGACGTGTTGATGGAAGCCTCTTCCCATGGTGAATCTGATCCAATGAAAGGAGTATCTGAAAACATCATGCTCGGTCAACTGGCTCCTGCAGGCACTGGTTGCTTTGACCTGCTGTTGGATGCTGAGAAATGCAAATATGGCATGGAGATCCCCACTAACATTCCTGGAATCAGTGTTGCAGGACCCACAGGCATGTTCTTTGGCTCTGCCCCCAGCCCGATGAGTGGCATGTCTCCTGCCATGACCCCCTGGAATACAGGAGCTACTCCTGCATATGGTGCCTGGTCTCCCAGTGTTGGAAGTGGAATGACACCTGGAGCTGCAGGCTTTTCTCCAAGTGCTGCATCTGATGCCAGCGGCTTCTCACCTGGATATTCTCCTGCCTGGTCCCCTACTCCTGGCTCTCCAGGATCGCCTGGACCAGCTAGCCCATATATTCCATCACCAGGAGCCTTGTCTCCCAACTACTCTCCAACCTCTCCTGCTTATGAGCCTCGTTCTCCTGGTGGTGGATACACCCCACAGAGCCCTGGTTATTCTCCGACTTCTCCATCTTACTCTCCAACTTCACCATCTTATTCTCCCACCAGCCCGAACTACAGCCCAACATCTCCGTCCTACTCTCCTACATCACCTTCCTATTCTCCAACATCGCCGTCTTATTCTCCAACATCTCCAAGCTACTCTCCGACTTCACCTTCTTATTCTCCGACTTCACCATCCTATTCGCCAACTTCACCATCCTATTCACCAACATCTCCTAGTTATAGCCCCACATCCCCCAGCTACAGCCCAACCTCACCAAGTTACAGCCCCACATCTCCATCTTATTCTCCTACCTCTCCATCTTATTCCCCAACCTCCCCATCTTACTCTCCCACCTCCCCAAGCTACTCTCCAACCTCCCCTTCCTATTCCCCAACATCTCCAAGCTACAGTCCCACTTCACCCAACTACACACCCACCTCCCCCAGTTATTCCCCAACCTCTCCATCTTACAGCCCTACCTCACCTTCCTACTCCCCCACCTCTCCCAATTACACACCCACCAGCCCCAACTATTCCCCCACTTCTCCTTCATATTCTCCCACTTCTCCATCCTACTCTCCATCCAGTCCTCGCTACACCCCACAGTCTCCCACCTACACCCCAAGCTCACCTTCCTACAGCCCGAGCTCTCCATCCTATTCCCCTACATCTCCAAAATACACACCCACCTCTCCCTCCTACAGTCCCAGTTCTCCAGAGTATACTCCAACATCCCCCAAATATTCCCCTACTTCTCCAAAGTACTCTCCTACATCGCCCAAATACAGTCCCACCTCTCCAACCTACTCCCCAACTACGCCCAAGTACAGCCCCACTTCCCCAACTTATTCTCCAACCTCTCCTACCTACACCCCAACCAGTCCCAAATACTCCCCTACCTCTCCAACTTACTCTCCAACTTCACCGAAATACTCTCCCACTTCCCCCACTTACTCTCCCACTAGTCCCAAGGGCTCCACTTACAGCCCCACTTCTCCTGGCTACAGCCCCACCTCTCCAACCTACAGCCCTGCCATCAGCCCAGATGACAGTGATGAAGAAAATAACTAAAGATTGTTTGCGCCGGGCTTTGTCTGACTTCCCTGATGGGCAGTTTGACCCTAGGATAAAGACTGAAGGAAAGCCATCCAGCTGTGATTCACGGGGAAGGCTGAGCAACCTGGGCTCCCATCCTCTTGGTTTCTCTTTTGGACTTCTTGAACTGTTCTTAATTAGCCTCACTAAACAGGCTTCAGTGGTTGCATATGTTATTTCAGAGGTTTGAACTATAAGCCAAACAAGGCTGCCTTTGTACAGACCATTTGGTCACCAAGGTGAGGGAGAACCAATAACTCAAAATTGGTGGAAGGATGCAGGTGGCTAACTGCTTTTTGGAGGAAAAAGATCACTTGTAATCCTCTTTCCATCCATCATTTCTATCTCCCTTACTTTTTCTCTAAAATTCAGTGTTGGATGTAAAGGAAATCTAAGAAGTATTGCCAAAAGCCTTCAAACAGAAAACAGTGGATTGTATCTAAAAAGTTTCAATTGAAACCTTGACAAAAAAAATCTCTATAACGTGAATAGAAAGAGGGGAAACTGACCCTTTACACATTTTACAGCTTTTTGTTTCTTCTTTGTTGTAAATAAGCGCTTGTTCCtggttttgataattttcctgaTCAGAACTGAGAACtctttaaatattgttttgttttcttctgtCTAAATGAGTTCTTGCATACAATAATTTCTAAAGGAACGGATGGTCGGAAGTGGCTGTCTGTTGTTGAAGCTGACACACATTGTGCAGATTTAAAATGTCTTGTTATACTGTAGTCTAAATATGTATGCTGGCCCATGGCATGGGTAAAAGTGTTGTGTAGTGATTGCCCTCTCCTGTAGGAAGTGGAGAGAGAGAAACCGGATGTCTAATTAACAGGCATCAACTTCCTATTCAAATGTCCCCAAAAGATGCAAGCCTTATCCTTCACCAGCATCTGCCCAGTAATTTACTATTtcaataaaagcaaaaacaactgTTAGACGGTGGTCTTGTACCTCTACGCACATAGtgtgaagtgagtttttcttttggTTTTAGTTTCCTTTTAACCCAAATGGAGTTGGAACACTGCATCTATATCCCCAAGCCACCATGTTAACCTTTTTTAAAACCATCTTGGTTCAAATCTTATGAGACCTTCCTTGTCCTCAGCACTCAGCCCTttactataaaaagtatataatCTTTCTTTTCCTGATATTTGCATCAAGTGCAACTAATATTCTCTTGTGTGAATTACTGCGGAAAAGCTTTTATTTGACACTTTTTCTTGCGCTGGCTTACTTGTTGTCGGGTCAGCTATGCTTTTTTTGGATTAAGTGCTTGAGTGGGGGGAAAAAGGTGCAGTTTGgtttgtttcctttttaaatatgcaCTGTTTCATATCTTGTGTAATTGTGCCCTAAAACCTTCGTGGTTCTTCGTTAACCCAAATGTCATCATTATGCTTGAACAGTAGAGGGCGACAGAGATTGATTTGACTCGGGCATGTAGATCTTTTTGAGTGTTACTTTTTAAAGCAAGCAGCATCTGTGGTTTCCTCAACTCGCACTTCCATCTGCATGGTGGTAGCTGCAGGAGGTTTTGCTGATTCACTTGTAAATGACTTTGCTCTTGCATATTTCAGCTTTAGTTAAGGCCTTAGACTGCATTAGGGAGAGCAGCTCTGACCGTGTCTCTTTAATGCCCTTGTTTGCCTTCAGTTTAATGGATGTTTCAGACCAGTCCAGTTAATGCTCTGTACCCAGGCTACCTgtaagagtgtgtgagtgtgcgtgcgtgtgtgaatgagggtataAATGGGAAAAGACAGGGTTTTCTTGAGTTTGAGTAATTACTGGGTCGGGATTATGGGGAAAGGAGAATTTAAATTAAGAGAAATTGCCACTGTATAGAAATCAATCTGATTACTTAATTCTCTGTatctatgttttgtttgtttttgacttgaaaaataaaaagtttgactaaa

Function

symbol description
polr2a Predicted to enable DNA binding activity; metal ion binding activity; and nucleotidyltransferase activity. Predicted to contribute to RNA polymerase II activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Is expressed in blastomere. Orthologous to human POLR2A (RNA polymerase II subunit A).

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016779 nucleotidyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0001055 RNA polymerase II activity molecular_function

KEGG:

id description
ko03020 RNA polymerase
ko05016 Huntington disease
ko03021 Transcription machinery
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041008-78 Predicted to enable DNA binding activity; metal ion binding activity; and nucleotidyltransferase activity. Predicted to contribute to RNA polymerase II activity. Predicted to act upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of RNA polymerase II, core complex. Is expressed in blastomere. Orthologous to human POLR2A (RNA polymerase II subunit A).

Ensembl:

ensembl_id ENSDARG00000099966

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009305 True 8182 mRNA 0.48 28 22560067 22573297

Neighbor

gene id symbol gene type direction distance location
XLOC_004697 hdlbpb coding upstream 115006 22404108 ~ 22445061 (+)
XLOC_004696 NA coding upstream 255226 22258962 ~ 22304841 (+)
XLOC_004695 NA coding upstream 540297 22017946 ~ 22019770 (+)
XLOC_004694 NA coding upstream 760671 21757817 ~ 21799396 (+)
XLOC_004693 pkd1b coding upstream 812059 21697540 ~ 21748008 (+)
XLOC_004699 capgb coding downstream 3107 22576404 ~ 22618080 (+)
XLOC_004700 CR925753.1 coding downstream 5107 22578404 ~ 22578530 (+)
XLOC_004701 NA coding downstream 45091 22618388 ~ 22619122 (+)
XLOC_004702 mfsd8 coding downstream 55407 22628704 ~ 22645215 (+)
XLOC_004703 si:dkey-219e21.4 coding downstream 84626 22657923 ~ 22664563 (+)
XLOC_004691 FO704814.1 non-coding upstream 1122609 21437346 ~ 21437458 (+)
XLOC_004689 NA non-coding upstream 1453080 20806897 ~ 21106987 (+)
XLOC_004707 NA non-coding downstream 464150 23037447 ~ 23040091 (+)
XLOC_004708 BX927205.1 non-coding downstream 536866 23110163 ~ 23110277 (+)
XLOC_004711 NA non-coding downstream 881132 23454429 ~ 23605722 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_03808559_03820963 POLR2A coding CI01000063 null 3808275 ~ 3821730 (+)
bowfin (Amia calva) AMCG00011703 polr2a coding CM030138.1 CM030138.1 2496064 ~ 2510692 (-)